Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Reverse (-)

67685325 .. 67685735

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG467300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCATTGCAATTATCATCGATTTGATCTATGGTCTTGTTCTTATTTACTTCCTTTACATGGTCGCAAGTGAATTTGCTTTCAGATTCTCCAAGAGAAAGTATAAGTTGATTAAAAGAGAATGGAGATTACTGGGTGCTCTATTAGAGGATTGCAATGAAGTTACAAGATCTGGGATTCAAATTACCCAGAAAGCCAGTACACTCTTGGATTCAGGACCTGTCCAAGCTGGATTAACTATACAACTGAATGATAAGGAAACCGGTTGGATAACGAATGCAAGAAAAGTGGTTACTTGTGTTCAAAGATTTCGGAGATTGAGAAAGAGAAGACAATATCCGATGCTGTTTTTCTTTGTCTTGGTTGATCTAGTACCGAAGATTGGTAATTTGGTATTACCTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

136

Amino Acids

15.73

Weight (kDa)

10.12

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	2 cut(s)	202, 375
AfiI	CCNNNNNNNGG	2 cut(s)	61, 383
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	182, 305
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw21I	GWGCWC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	74
AsiGI	ACCGGT	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	371
BglII	AGATCT	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	337
Bsa29I	ATCGAT	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 383
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	138, 198
Bse3DI	GCAATG	2 cut(s)	6, 163
BseCI	ATCGAT	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	61, 383
BseMI	GCAATG	2 cut(s)	6, 163
BseNI	ACTGG	2 cut(s)	138, 198
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	61, 383
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	27, 170, 367
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	21
BsrDI	GCAATG	2 cut(s)	6, 163
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	138, 198
BssAI	RCCGGY	1 cut(s)	263
BssMI	GATC	3 cut(s)	27, 170, 367
BstKTI	GATC	3 cut(s)	30, 173, 370
BstMBI	GATC	3 cut(s)	27, 170, 367
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	218
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	201, 374
CspAI	ACCGGT	1 cut(s)	263
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	3 cut(s)	5, 197, 230
CviKI_1	RGCY	3 cut(s)	5, 197, 230
CviQI	GTAC	2 cut(s)	201, 374
DpnI	GATC	3 cut(s)	29, 172, 369
DpnII	GATC	3 cut(s)	27, 170, 367
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	218
FaeI	CATG	1 cut(s)	64
FaiI	YATR	4 cut(s)	33, 62, 105, 242
FatI	CATG	1 cut(s)	60
FspBI	CTAG	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	3 cut(s)	87, 178, 212
HpaII	CCGG	1 cut(s)	264
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	3 cut(s)	86, 315, 342
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	11, 156, 281
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	27, 170, 367
LpnPI	CCDG	8 cut(s)	119, 159, 201, 203, 211, 216, 234, 277
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	163, 292
MalI	GATC	3 cut(s)	29, 172, 369
MboI	GATC	3 cut(s)	27, 170, 367
MboII	GAAGA	2 cut(s)	342, 391
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	12, 74, 183, 388
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	1 cut(s)	142
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	114, 236
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	283
NdeII	GATC	3 cut(s)	27, 170, 367
NlaIII	CATG	1 cut(s)	64
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	87, 178, 212
PinAI	ACCGGT	1 cut(s)	263
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	2 cut(s)	202, 375
RsaNI	GTAC	2 cut(s)	201, 374
SaqAI	TTAA	2 cut(s)	114, 236
Sau3AI	GATC	3 cut(s)	27, 170, 367
Sau96I	GGNCC	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	3 cut(s)	223, 232, 403
SfaNI	GCATC	1 cut(s)	333
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	4 cut(s)	12, 74, 183, 388
SspMI	CTAG	1 cut(s)	371
TaqI	TCGA	1 cut(s)	21
TasI	AATT	4 cut(s)	12, 74, 183, 388
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	87, 178, 212
Tru1I	TTAA	2 cut(s)	114, 236
Tru9I	TTAA	2 cut(s)	114, 236
TspDTI	ATGAA	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.