Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Reverse (-)

82906 .. 84053

Gene Structure 1148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGTTAGATACTCTGCACTAAATAAAAAGGATTTGCAAGAAGGTCACTTTGAACTCTTCCCTGGTGAGTTTGAAATCCCTGCAAGGAGATTAGTGGCTTCAGGGATTGCAAAAGGGTTGGTGGCAGAAGATTTTGCATTCGATCATCTCTTAGATTTGGTCAACCGCAGTATGATTCAAGTAGTTGAAAGGAAGCCTAATGGGGATGTCAAGACATGTCGCTTGCCTTCTGTGCTTCGGGAACTCTGGTTGCAAGACAAAGGCAATAGCAGCAAAACATGCTCATGGTCCCAAAGTACAAGTCCAAACCAGCATCTTATTGCCTATCACTTTGATGATAATGATGCCAGTTTCAGTAGGATCAATGGTCTCAACATGAATACGCCAAATGTTTTGCAGAATGGCAAGTATCCCCAATCCATTCTTTTCTTTGATACTCGAGAAGGAAATAAATCAGGAGAGGAAATAGGCTACTTTCTTCGCAAGGGCATTGCTGTTAGTTTCTTTCAGCAGCTGCTGGTTCTTGACCTGGAGCATGTATTCAGACCTCAATTACCGACTACCATAGGTAAATTAAAGAAGCTGAAATATCTAGGCTTAAGGTGGACATACTTAGAGGAAATGCCAGCATCTATAGGCAATTTGGTGGAACTCCAAACTCTAGAATTGAAGCATACTCGTATTACAACTATCTCAACTTCAATTTGGAAACTGAAGAACCTTCGGCACCTGTACTCGAATGAGAATTGTCGAATCAAATTTAGGTCTCTAACAACTGCCATTTCCATGAGGGAACTGAAGACACTATCAGGGAATCTTGTGAAGGATCGACTCAACAAGTTGACCAACCTTCAAAAGTTGGGATTGACATTCCAGCTGACGCAGCCAGAGAAAAAGGTCATAGCAAGATGGATTGTGCAGCTGAATGACTTGGAGTCTTTGAAGTTGGCGTCTATTAATGAGAAGAGTGCACCTCAACTTCTGAGATTGAAACCTCTTTTACGCCTCAAAAAACTGTCCACCCTATACTTGTCTGGAAAGCTTGAAACCCATCCATTGAACTCCCTAAAAGTCTTATTCATTTTACCTTATCAGCCTCTGGAATTGTTAATGATTCAATGCCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

376

Amino Acids

43.13

Weight (kDa)

9.66

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	165 - 341	4.9e-23	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	726
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	2 cut(s)	368, 834
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	3 cut(s)	84, 734, 818
AcyI	GRCGYC	1 cut(s)	950
AfaI	GTAC	2 cut(s)	298, 734
AflII	CTTAAG	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	215
AhdI	GACNNNNNGTC	1 cut(s)	934
AjnI	CCWGG	2 cut(s)	61, 528
AluBI	AGCT	5 cut(s)	514, 583, 877, 922, 1042
AluI	AGCT	5 cut(s)	514, 583, 877, 922, 1042
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	2 cut(s)	374, 771
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	2 cut(s)	368, 834
AlwNI	CAGNNNCTG	3 cut(s)	514, 517, 1099
Ama87I	CYCGRG	1 cut(s)	438
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	5 cut(s)	270, 511, 514, 883, 919
ApoI	RAATTY	1 cut(s)	758
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AseI	ATTAAT	1 cut(s)	957
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	973
BanI	GGYRCC	1 cut(s)	726
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	1 cut(s)	973
BbvI	GCAGC	5 cut(s)	282, 501, 523, 895, 931
BccI	CCATC	2 cut(s)	903, 1059
BciT130I	CCWGG	2 cut(s)	63, 530
BciVI	GTATCC	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	374, 771
BfaI	CTAG	2 cut(s)	593, 662
BfmI	CTRYAG	1 cut(s)	633
BfrI	CTTAAG	1 cut(s)	598
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	5 cut(s)	271, 512, 515, 884, 920
BlsI	GCNGC	5 cut(s)	272, 513, 516, 885, 921
Bme1390I	CCNGG	2 cut(s)	63, 530
Bme18I	GGWCC	1 cut(s)	288
BmeRI	GACNNNNNGTC	1 cut(s)	934
BmeT110I	CYCGRG	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	290, 728
BmrFI	CCNGG	2 cut(s)	63, 530
BmsI	GCATC	3 cut(s)	322, 334, 638
BpiI	GAAGAC	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	958, 990
BpmI	CTGGAG	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	950
BsaI	GGTCTC	2 cut(s)	374, 771
BsaJI	CCNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	63, 530
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	211, 1051
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	974
BseNI	ACTGG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	973
BseXI	GCAGC	5 cut(s)	282, 501, 523, 895, 931
BsgI	GTGCAG	1 cut(s)	938
BshNI	GGYRCC	1 cut(s)	726
BsiHKAI	GWGCWC	1 cut(s)	973
BsiHKCI	CYCGRG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	374, 771
BsmFI	GGGAC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	137
Bso31I	GGTCTC	2 cut(s)	374, 771
BsoBI	CYCGRG	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp143I	GATC	3 cut(s)	142, 360, 826
BspACI	CCGC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	975
BspLI	GGNNCC	2 cut(s)	290, 728
BspPI	GGATC	2 cut(s)	368, 834
BspT107I	GGYRCC	1 cut(s)	726
BspTI	CTTAAG	1 cut(s)	598
BspTNI	GGTCTC	2 cut(s)	374, 771
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	142, 360, 826
BssNI	GRCGYC	1 cut(s)	950
Bst2UI	CCWGG	2 cut(s)	63, 530
Bst4CI	ACNGT	1 cut(s)	1017
Bst6I	CTCTTC	2 cut(s)	62, 959
BstACI	GRCGYC	1 cut(s)	950
BstAFI	CTTAAG	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	224, 627
BstDEI	CTNAG	3 cut(s)	151, 613, 983
BstF5I	GGATG	2 cut(s)	211, 1051
BstKTI	GATC	3 cut(s)	145, 363, 829
BstMAI	GTCTC	2 cut(s)	374, 771
BstMBI	GATC	3 cut(s)	142, 360, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 270, 279, 883
BstNI	CCWGG	2 cut(s)	63, 530
BstNSI	RCATGY	3 cut(s)	219, 282, 539
BstSCI	CCNGG	2 cut(s)	61, 528
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	973
BstV1I	GCAGC	5 cut(s)	282, 501, 523, 895, 931
BstV2I	GAAGAC	1 cut(s)	806
BsuI	GTATCC	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	211, 1051
Cac8I	GCNNGC	2 cut(s)	224, 627
CaiI	CAGNNNCTG	3 cut(s)	514, 517, 1099
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	2 cut(s)	889, 939
Csp6I	GTAC	2 cut(s)	297, 733
CviAII	CATG	6 cut(s)	216, 279, 285, 376, 536, 787
CviQI	GTAC	2 cut(s)	297, 733
DdeI	CTNAG	3 cut(s)	151, 613, 983
DpnI	GATC	3 cut(s)	144, 362, 828
DpnII	GATC	3 cut(s)	142, 360, 826
DriI	GACNNNNNGTC	1 cut(s)	934
Eam1104I	CTCTTC	2 cut(s)	62, 959
Eam1105I	GACNNNNNGTC	1 cut(s)	934
EarI	CTCTTC	2 cut(s)	62, 959
Eco31I	GGTCTC	2 cut(s)	374, 771
Eco47I	GGWCC	1 cut(s)	288
Eco57I	CTGAAG	3 cut(s)	84, 734, 818
Eco88I	CYCGRG	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	61, 528
FaeI	CATG	6 cut(s)	219, 282, 288, 379, 539, 790
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	6 cut(s)	215, 278, 284, 375, 535, 786
Fnu4HI	GCNGC	5 cut(s)	271, 512, 515, 884, 920
FokI	GGATG	2 cut(s)	218, 1038
Fsp4HI	GCNGC	5 cut(s)	271, 512, 515, 884, 920
FspBI	CTAG	2 cut(s)	593, 662
GluI	GCNGC	5 cut(s)	271, 512, 515, 884, 920
GsuI	CTGGAG	1 cut(s)	551
HgaI	GACGC	2 cut(s)	889, 939
Hin1I	GRCGYC	1 cut(s)	950
Hin1II	CATG	6 cut(s)	219, 282, 288, 379, 539, 790
HincII	GTYRAC	2 cut(s)	163, 843
HindII	GTYRAC	2 cut(s)	163, 843
HindIII	AAGCTT	1 cut(s)	1040
HinfI	GANTC	6 cut(s)	175, 753, 814, 831, 935, 1114
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	5 cut(s)	163, 606, 843, 971, 1020
Hpy188I	TCNGA	2 cut(s)	545, 984
Hpy188III	TCNNGA	8 cut(s)	211, 239, 440, 456, 524, 662, 1035, 1100
Hpy8I	GTNNAC	5 cut(s)	163, 606, 843, 971, 1020
HpyAV	CCTTC	6 cut(s)	35, 237, 437, 731, 817, 860
HpyCH4III	ACNGT	1 cut(s)	1017
HpyCH4V	TGCA	9 cut(s)	17, 37, 83, 110, 137, 253, 397, 919, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 270, 279, 883
HpyF3I	CTNAG	3 cut(s)	151, 613, 983
Hsp92I	GRCGYC	1 cut(s)	950
Hsp92II	CATG	6 cut(s)	219, 282, 288, 379, 539, 790
Kzo9I	GATC	3 cut(s)	142, 360, 826
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	5 cut(s)	282, 501, 523, 895, 931
LweI	GCATC	3 cut(s)	322, 334, 638
MaeI	CTAG	2 cut(s)	593, 662
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	144, 362, 828
MboI	GATC	3 cut(s)	142, 360, 826
MboII	GAAGA	6 cut(s)	49, 140, 470, 727, 811, 976
MhlI	GDGCHC	1 cut(s)	973
MluCI	AATT	8 cut(s)	551, 572, 640, 665, 702, 745, 758, 1103
MlyI	GAGTC	2 cut(s)	825, 944
MnlI	CCTC	8 cut(s)	454, 558, 610, 783, 984, 1005, 1016, 1107
MseI	TTAA	4 cut(s)	575, 599, 957, 1109
MslI	CAYNNNNRTG	3 cut(s)	283, 333, 785
MspA1I	CMGCKG	3 cut(s)	514, 877, 922
MspCI	CTTAAG	1 cut(s)	598
MspR9I	CCNGG	2 cut(s)	63, 530
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	2 cut(s)	63, 530
MwoI	GCNNNNNNNGC	4 cut(s)	232, 270, 279, 883
NdeII	GATC	3 cut(s)	142, 360, 826
NlaIII	CATG	6 cut(s)	219, 282, 288, 379, 539, 790
NlaIV	GGNNCC	2 cut(s)	290, 728
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	3 cut(s)	219, 282, 539
PaeR7I	CTCGAG	1 cut(s)	438
PciI	ACATGT	1 cut(s)	215
PctI	GAATGC	1 cut(s)	137
PfeI	GAWTC	4 cut(s)	175, 753, 814, 1114
PkrI	GCNGC	5 cut(s)	272, 513, 516, 885, 921
PleI	GAGTC	2 cut(s)	825, 943
PpsI	GAGTC	2 cut(s)	825, 943
PscI	ACATGT	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	957
Psp6I	CCWGG	2 cut(s)	61, 528
PspGI	CCWGG	2 cut(s)	61, 528
PspN4I	GGNNCC	2 cut(s)	290, 728
PspPI	GGNCC	1 cut(s)	288
PstNI	CAGNNNCTG	3 cut(s)	514, 517, 1099
PvuII	CAGCTG	3 cut(s)	514, 877, 922
RsaI	GTAC	2 cut(s)	298, 734
RsaNI	GTAC	2 cut(s)	297, 733
RseI	CAYNNNNRTG	3 cut(s)	283, 333, 785
SaqAI	TTAA	4 cut(s)	575, 599, 957, 1109
SatI	GCNGC	5 cut(s)	271, 512, 515, 884, 920
Sau3AI	GATC	3 cut(s)	142, 360, 826
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	2 cut(s)	825, 944
ScrFI	CCNGG	2 cut(s)	63, 530
SduI	GDGCHC	1 cut(s)	973
SfaNI	GCATC	3 cut(s)	322, 334, 638
SfcI	CTRYAG	1 cut(s)	633
Sfr274I	CTCGAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	288
SlaI	CTCGAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	3 cut(s)	283, 333, 785
SmlI	CTYRAG	2 cut(s)	438, 598
SmoI	CTYRAG	2 cut(s)	438, 598
Sse9I	AATT	8 cut(s)	551, 572, 640, 665, 702, 745, 758, 1103
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	2 cut(s)	593, 662
StyD4I	CCNGG	2 cut(s)	61, 528
TaaI	ACNGT	1 cut(s)	1017
TaqI	TCGA	5 cut(s)	141, 439, 737, 751, 829
TasI	AATT	8 cut(s)	551, 572, 640, 665, 702, 745, 758, 1103
TatI	WGTACW	2 cut(s)	296, 732
TfiI	GAWTC	4 cut(s)	175, 753, 814, 1114
Tru1I	TTAA	4 cut(s)	575, 599, 957, 1109
Tru9I	TTAA	4 cut(s)	575, 599, 957, 1109
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	5 cut(s)	270, 511, 514, 883, 919
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	392, 1069
Vha464I	CTTAAG	1 cut(s)	598
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	1 cut(s)	288
VspI	ATTAAT	1 cut(s)	957
XapI	RAATTY	1 cut(s)	758
XbaI	TCTAGA	1 cut(s)	661
XceI	RCATGY	3 cut(s)	219, 282, 539
XhoI	CTCGAG	1 cut(s)	438
XspI	CTAG	2 cut(s)	593, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.