Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Reverse (-)

58833954 .. 58834325

Gene Structure 372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG432400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTTAGATACTCTGCACTAAATAAAAAGGATTTGCAAGATGGTCACTTCAAACTCTTCCCTGGTGAGTTTGAAATCCCTGCAAGGAGATTAGTGGATTCATGGATTGCAAAAGGGTTGGTGGCAGAAGATTTTGCATTCGATCATCTCTTAGATTTGATCAACCGCAGTATGATTCAAGTAGTTGAAAGGAAGCCTAATGGGGATGTCAAGACATGTCGCTTGCCTTCTGCGCTTCGGGAACTCTGGTTGCAAGACAAAGGCAATAGCAGTAAAACATGCTACAAAGTACAAGTCCAGACCAGCAACTTATTGCCTATCACTTTGATGATAATGCTGCCAGTTTCAGTAGGATCAATGGTCTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

123

Amino Acids

13.92

Weight (kDa)

9.0

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	19 - 82	9e-09	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	52, 74, 179, 188
AjnI	CCWGG	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	337
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspLEI	GCGC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	142, 159, 353
BspACI	CCGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	142, 159, 353
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	3 cut(s)	145, 162, 356
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	3 cut(s)	142, 159, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	2 cut(s)	219, 282
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	4 cut(s)	102, 216, 279, 369
CviJI	RGCY	1 cut(s)	196
CviKI_1	RGCY	1 cut(s)	196
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	3 cut(s)	144, 161, 355
DpnII	GATC	3 cut(s)	142, 159, 353
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	61
FaeI	CATG	4 cut(s)	105, 219, 282, 372
FaiI	YATR	5 cut(s)	103, 173, 217, 280, 370
FatI	CATG	4 cut(s)	101, 215, 278, 368
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	338
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	4 cut(s)	105, 219, 282, 372
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	2 cut(s)	98, 175
HphI	GGTGA	1 cut(s)	77
Hpy188III	TCNNGA	3 cut(s)	211, 239, 298
HpyAV	CCTTC	1 cut(s)	237
HpyCH4V	TGCA	6 cut(s)	17, 37, 83, 110, 137, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	151
Hsp92II	CATG	4 cut(s)	105, 219, 282, 372
HspAI	GCGC	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	142, 159, 353
LpnPI	CCDG	7 cut(s)	48, 75, 93, 232, 311, 316, 354
Lsp1109I	GCAGC	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	144, 161, 355
MboI	GATC	3 cut(s)	142, 159, 353
MboII	GAAGA	2 cut(s)	49, 140
MslI	CAYNNNNRTG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	232
NdeII	GATC	3 cut(s)	142, 159, 353
NlaIII	CATG	4 cut(s)	105, 219, 282, 372
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	2 cut(s)	219, 282
PciI	ACATGT	1 cut(s)	215
PctI	GAATGC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	98, 175
PkrI	GCNGC	1 cut(s)	339
PscI	ACATGT	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	326
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	3 cut(s)	142, 159, 353
ScrFI	CCNGG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	326
SsiI	CCGC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	61
TaqI	TCGA	1 cut(s)	141
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	98, 175
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	90
XceI	RCATGY	2 cut(s)	219, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.