Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002835.1

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Forward (+)

62643 .. 63793

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002835.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggccattgcaattatcatcgatttgatctatggtcttgttcttatttacttcctttacatggtcgcaagtgaatttgctttcagattctccaagagaaagtataagttgattaaaagagaatggagattactgggtgctctattagaggattgcaatgaagttacaagatctgggattcaaattacccagaaagccagtacactcttggattcaggacctgtccaagctggattaactatacaactgaatgataaggaaaccggttggataacgaatgcaagaaaagtgatcactggagcagacaagttccaaagttcgaagtctgcaggacaatcttatgctgatgaacttgaatgtacatctgtcaattctgagccaccaacagcccaaattggcttgagaattgatcctgagttgatcatttcctctgtcactgaaaaaccagaagttaaatccttcataatgcatttgcagctactgcaggctttcatgaaagatttgcgaaggctcaaagtactggaaagtaagagggaggagtcctgggtgatagcagcaaacaagacccttgaaaaggcaaaggcaggatctctggcctgctggaaaaaaagatatggttttaaatttgtcaaacgagactcatcattgaaatataatgtacaccatgcttctcaacggaaaagcaatcaatatcagatcacagatgataaggatctctctgatttaaacaacattcggaactggctcattcaactgccaaaaacaagcaataaggtgggatctcatgtcagctcattgagcaaggagctggagcacatgcctaagctgttggaagatacaaaagcaactgaagaaaatggtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

288

Amino Acids

32.68

Weight (kDa)

9.29

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	404, 595, 720, 787
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	74, 623
AfaI	GTAC	4 cut(s)	202, 361, 519, 660
AfiI	CCNNNNNNNGG	2 cut(s)	61, 574
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	5 cut(s)	182, 356, 572, 649, 752
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	5 cut(s)	230, 478, 792, 808, 826
AluI	AGCT	5 cut(s)	230, 478, 792, 808, 826
Alw21I	GWGCWC	2 cut(s)	142, 816
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	4 cut(s)	404, 595, 720, 787
AlwNI	CAGNNNCTG	2 cut(s)	221, 481
AoxI	GGCC	2 cut(s)	3, 594
ApeKI	GCWGC	2 cut(s)	475, 554
ApoI	RAATTY	2 cut(s)	74, 623
AsiGI	ACCGGT	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	559
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	142, 816
BbvI	GCAGC	2 cut(s)	487, 566
BciT130I	CCWGG	1 cut(s)	544
BclI	TGATCA	2 cut(s)	291, 420
BcoDI	GTCTC	1 cut(s)	630
BfmI	CTRYAG	2 cut(s)	327, 482
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	2 cut(s)	476, 555
BlsI	GCNGC	2 cut(s)	477, 556
BmcAI	AGTACT	1 cut(s)	519
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	544
BmrI	ACTGGG	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	143
BpmI	CTGGAG	2 cut(s)	318, 830
Bpu10I	CCTNAGC	1 cut(s)	822
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	421
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	711
BsaJI	CCNNGG	1 cut(s)	543
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 574
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	5 cut(s)	138, 198, 301, 525, 746
Bse3DI	GCAATG	2 cut(s)	6, 163
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	544
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	543
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	2 cut(s)	61, 574
BseMI	GCAATG	2 cut(s)	6, 163
BseMII	CTCAG	2 cut(s)	366, 405
BseNI	ACTGG	5 cut(s)	138, 198, 301, 525, 746
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	487, 566
BshFI	GGCC	2 cut(s)	5, 596
BshTI	ACCGGT	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	142, 816
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	61, 574
BsmAI	GTCTC	1 cut(s)	630
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	5, 596
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	142, 816
Bsp1407I	TGTACA	2 cut(s)	359, 658
Bsp143I	GATC	9 cut(s)	27, 170, 291, 409, 420, 587, 696, 712, 779
BspANI	GGCC	2 cut(s)	5, 596
BspCNI	CTCAG	2 cut(s)	367, 406
BspDI	ATCGAT	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	492
BspMAI	CTGCAG	2 cut(s)	331, 486
BspPI	GGATC	4 cut(s)	404, 595, 720, 787
BspT104I	TTCGAA	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	6, 163
BsrFI	RCCGGY	1 cut(s)	263
BsrGI	TGTACA	2 cut(s)	359, 658
BsrI	ACTGG	5 cut(s)	138, 198, 301, 525, 746
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	9 cut(s)	27, 170, 291, 409, 420, 587, 696, 712, 779
Bst2UI	CCWGG	1 cut(s)	544
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstAUI	TGTACA	2 cut(s)	359, 658
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	486, 598
BstDEI	CTNAG	3 cut(s)	375, 414, 822
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstKTI	GATC	9 cut(s)	30, 173, 294, 412, 423, 590, 699, 715, 782
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	9 cut(s)	27, 170, 291, 409, 420, 587, 696, 712, 779
BstMWI	GCNNNNNNNGC	3 cut(s)	475, 481, 798
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	2 cut(s)	327, 482
BstV1I	GCAGC	2 cut(s)	487, 566
BstX2I	RGATCY	4 cut(s)	170, 587, 712, 779
BstYI	RGATCY	4 cut(s)	170, 587, 712, 779
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	5, 596
BsuTUI	ATCGAT	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	294, 435
Cac8I	GCNNGC	2 cut(s)	486, 598
CaiI	CAGNNNCTG	2 cut(s)	221, 481
CciI	TCATGA	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	218
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	4 cut(s)	201, 360, 518, 659
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	5 cut(s)	61, 493, 665, 785, 817
CviQI	GTAC	4 cut(s)	201, 360, 518, 659
DdeI	CTNAG	3 cut(s)	375, 414, 822
DpnI	GATC	9 cut(s)	29, 172, 293, 411, 422, 589, 698, 714, 781
DpnII	GATC	9 cut(s)	27, 170, 291, 409, 420, 587, 696, 712, 779
DraI	TTTAAA	2 cut(s)	622, 726
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	471
FaeI	CATG	5 cut(s)	64, 496, 668, 788, 820
FatI	CATG	5 cut(s)	60, 492, 664, 784, 816
FbaI	TGATCA	2 cut(s)	291, 420
Fnu4HI	GCNGC	2 cut(s)	476, 555
Fsp4HI	GCNGC	2 cut(s)	476, 555
GluI	GCNGC	2 cut(s)	476, 555
GsuI	CTGGAG	2 cut(s)	318, 830
HaeIII	GGCC	2 cut(s)	5, 596
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	5 cut(s)	64, 496, 668, 788, 820
HinfI	GANTC	5 cut(s)	87, 178, 212, 539, 638
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	2 cut(s)	203, 661
Hpy188I	TCNGA	5 cut(s)	86, 376, 696, 721, 738
Hpy188III	TCNNGA	3 cut(s)	216, 413, 493
Hpy8I	GTNNAC	2 cut(s)	203, 661
HpyAV	CCTTC	2 cut(s)	469, 501
HpyCH4V	TGCA	7 cut(s)	11, 156, 281, 329, 469, 475, 484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	475, 481, 798
HpyF3I	CTNAG	3 cut(s)	375, 414, 822
Hsp92II	CATG	5 cut(s)	64, 496, 668, 788, 820
Ksp22I	TGATCA	2 cut(s)	291, 420
Kzo9I	GATC	9 cut(s)	27, 170, 291, 409, 420, 587, 696, 712, 779
LmnI	GCTCC	3 cut(s)	299, 805, 811
Lsp1109I	GCAGC	2 cut(s)	487, 566
MaeIII	GTNAC	2 cut(s)	163, 433
MalI	GATC	9 cut(s)	29, 172, 293, 411, 422, 589, 698, 714, 781
MboI	GATC	9 cut(s)	27, 170, 291, 409, 420, 587, 696, 712, 779
MboII	GAAGA	2 cut(s)	845, 863
MflI	RGATCY	4 cut(s)	170, 587, 712, 779
MhlI	GDGCHC	2 cut(s)	142, 816
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	12, 74, 183, 370, 393, 405, 623
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	548, 632
MmeI	TCCRAC	2 cut(s)	248, 810
MnlI	CCTC	4 cut(s)	142, 439, 525, 529
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	114, 236, 453, 621, 725
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	544
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	3 cut(s)	475, 481, 798
NdeII	GATC	9 cut(s)	27, 170, 291, 409, 420, 587, 696, 712, 779
NlaIII	CATG	5 cut(s)	64, 496, 668, 788, 820
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	1 cut(s)	820
NspV	TTCGAA	1 cut(s)	320
PagI	TCATGA	1 cut(s)	492
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	87, 178, 212
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	477, 556
PleI	GAGTC	2 cut(s)	547, 632
PpsI	GAGTC	2 cut(s)	547, 632
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
PstI	CTGCAG	2 cut(s)	331, 486
PstNI	CAGNNNCTG	2 cut(s)	221, 481
PsuI	RGATCY	4 cut(s)	170, 587, 712, 779
RsaI	GTAC	4 cut(s)	202, 361, 519, 660
RsaNI	GTAC	4 cut(s)	201, 360, 518, 659
SaqAI	TTAA	5 cut(s)	114, 236, 453, 621, 725
SatI	GCNGC	2 cut(s)	476, 555
Sau3AI	GATC	9 cut(s)	27, 170, 291, 409, 420, 587, 696, 712, 779
Sau96I	GGNCC	1 cut(s)	218
ScaI	AGTACT	1 cut(s)	519
SchI	GAGTC	2 cut(s)	548, 632
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	2 cut(s)	142, 816
SetI	ASST	7 cut(s)	223, 232, 480, 777, 794, 810, 828
SfcI	CTRYAG	2 cut(s)	327, 482
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	7 cut(s)	12, 74, 183, 370, 393, 405, 623
StyD4I	CCNGG	1 cut(s)	542
TaqI	TCGA	2 cut(s)	21, 320
TasI	AATT	7 cut(s)	12, 74, 183, 370, 393, 405, 623
TatI	WGTACW	4 cut(s)	200, 359, 517, 658
TfiI	GAWTC	3 cut(s)	87, 178, 212
Tru1I	TTAA	5 cut(s)	114, 236, 453, 621, 725
Tru9I	TTAA	5 cut(s)	114, 236, 453, 621, 725
TscAI	CASTG	2 cut(s)	301, 442
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	475, 554
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	5 cut(s)	174, 363, 451, 481, 509
TspGWI	ACGGA	1 cut(s)	691
TspRI	CASTG	2 cut(s)	301, 442
VpaK11BI	GGWCC	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	572
XapI	RAATTY	2 cut(s)	74, 623
XceI	RCATGY	1 cut(s)	820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
ZrmI	AGTACT	1 cut(s)	519
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.