Rmu_co8305779.1_g000001

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8305779.1
Physical Location & Seq
Forward (+)
221 .. 877
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8305779.1_g000001.1.cds

Sequence Viewer

Length: 657 bp
atgtcagggaaagatgttaataaagcagaggagttgagaaaggtgctacaatacatcagacagaatgataaaccattgatacagaacttcaccacaaggtttattgactctgttcccaatctattctcctgtctttcttacttgaaactctttcccaaggactttgaaattcctgcacggagattaatagctttgtggattgcagaagatttggtagaagtaagcgaacatgattcagaaactgatgaagatgttgcatataagtatctaatacagttgattgatggaggcgtgattcaagtggttgaaagaaagcacaatggtgaagtcaagaattgtcgcttgccatatgctgtgcagaaactagagttggaaaatatgagttcaaggagaattacagatcatttcgaccgaagtgatgaatcatttgttcatattcatggtgaaagctcaagtattccaagcagttacagaggtattgtctccattctctcctttggtactcgagaaggaaataaacctggggcagaaataggcaactttttacgaggggtaattgcaggttggttcttccaaagactaaaagttctcgatcttgaaagactattcagacctgaattgcccgataccataggaagactaagtaagttgagataa

Protein Analysis

218

Amino Acids

25.11

Weight (kDa)

6.54

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 551
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 502
AgsI TTSAA 6 cut(s) 145, 167, 299, 308, 387, 599
AjnI CCWGG 1 cut(s) 520
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 2 cut(s) 191, 450
AluI AGCT 2 cut(s) 191, 450
Alw26I GTCTC 1 cut(s) 487
AlwNI CAGNNNCTG 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 504
ApoI RAATTY 1 cut(s) 168
AseI ATTAAT 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 82, 335, 455
AvaI CYCGRG 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 643
BccI CCATC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 551
Bme1390I CCNGG 1 cut(s) 522
BmeT110I CYCGRG 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 643
BpuEI CTTGAG 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 156, 521
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 2 cut(s) 156, 521
BseRI GAGGAG 1 cut(s) 44
BsgI GTGCAG 2 cut(s) 159, 377
Bsh1285I CGRYCG 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 504
BsmAI GTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 504
Bsp143I GATC 2 cut(s) 400, 592
BspMI ACCTGC 1 cut(s) 551
BssECI CCNNGG 2 cut(s) 156, 521
BssMI GATC 2 cut(s) 400, 592
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 641
BstKTI GATC 2 cut(s) 403, 595
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 2 cut(s) 400, 592
BstMCI CGRYCG 1 cut(s) 412
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 643
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 242
Csp6I GTAC 1 cut(s) 501
CviAII CATG 2 cut(s) 230, 440
CviJI RGCY 2 cut(s) 191, 450
CviKI_1 RGCY 2 cut(s) 191, 450
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 1 cut(s) 641
DpnI GATC 2 cut(s) 402, 594
DpnII GATC 2 cut(s) 400, 592
Eco130I CCWWGG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 233, 443
FaiI YATR 9 cut(s) 231, 259, 261, 349, 351, 380, 435, 441, 632
FatI CATG 2 cut(s) 229, 439
FauNDI CATATG 1 cut(s) 349
FspBI CTAG 1 cut(s) 365
Hin1II CATG 2 cut(s) 233, 443
HinfI GANTC 4 cut(s) 107, 233, 295, 422
HphI GGTGA 3 cut(s) 82, 335, 455
Hpy188I TCNGA 3 cut(s) 59, 238, 611
Hpy188III TCNNGA 4 cut(s) 331, 506, 590, 596
HpyAV CCTTC 1 cut(s) 503
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 5 cut(s) 176, 203, 257, 358, 560
HpyF3I CTNAG 1 cut(s) 641
Hsp92II CATG 2 cut(s) 233, 443
Kzo9I GATC 2 cut(s) 400, 592
LpnPI CCDG 6 cut(s) 142, 186, 507, 534, 546, 627
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 467
MalI GATC 2 cut(s) 402, 594
MboI GATC 2 cut(s) 400, 592
MboII GAAGA 4 cut(s) 218, 260, 562, 648
MluCI AATT 5 cut(s) 168, 334, 393, 555, 617
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 4 cut(s) 22, 281, 467, 542
MseI TTAA 2 cut(s) 18, 185
MslI CAYNNNNRTG 2 cut(s) 321, 438
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 349
NdeII GATC 2 cut(s) 400, 592
NlaIII CATG 2 cut(s) 233, 443
OliI CACNNNNGTG 1 cut(s) 321
PaeR7I CTCGAG 1 cut(s) 504
PfeI GAWTC 3 cut(s) 233, 295, 422
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 2 cut(s) 321, 438
SaqAI TTAA 2 cut(s) 18, 185
Sau3AI GATC 2 cut(s) 400, 592
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 522
SetI ASST 8 cut(s) 45, 101, 193, 452, 478, 523, 565, 616
Sfr274I CTCGAG 1 cut(s) 504
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 321, 438
SmlI CTYRAG 2 cut(s) 451, 504
SmoI CTYRAG 2 cut(s) 451, 504
Sse9I AATT 5 cut(s) 168, 334, 393, 555, 617
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 3 cut(s) 408, 505, 591
TaqII GACCGA 1 cut(s) 426
TasI AATT 5 cut(s) 168, 334, 393, 555, 617
TfiI GAWTC 3 cut(s) 233, 295, 422
Tru1I TTAA 2 cut(s) 18, 185
Tru9I TTAA 2 cut(s) 18, 185
TspDTI ATGAA 4 cut(s) 261, 422, 428, 435
TspGWI ACGGA 1 cut(s) 193
VspI ATTAAT 1 cut(s) 185
XapI RAATTY 1 cut(s) 168
XhoI CTCGAG 1 cut(s) 504
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.