Rh2CG432900

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
58867609 .. 58869671
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG432900.1

Sequence Viewer

Length: 1227 bp
ATGTCAGGGAAAGATGTTAATAAAGCAGAGGAGTTGAGAAAGGTGCTACAATACATCAGACAGAATGATAAATCATTGATACAGAACTTCACCACAAGGTTTATTGACTCTGTTCCCAATCTATTCTCTTGTCTTTCTTACTTGAAACTCTTTCCCAAGGACTTTGAAATTCCTGCACGGAGATTAATAGCTTTGTGGATTGCAGAAGATTTGGTAGAAGTAAGCGAGCATAATTCAGAAACTGATGAAGATGTTGCATATAAGTATCTAATACAGTTGATTGATGGAGGCGTGATTCAAGTGGTTGAAAGAAAGCACAATGGTGAAGTCAAGAATTGTCGCTTGCCATATGCTGTGCAGAAACTAGAGTTGGAAAATATGAGTTCAAGGAGAATTACAGATCATTTCGACCGAAGTGATGAATCATTTGTTCATATTCATGGTGAAAGCTCAAGTATTCCAAGCAGTTACAGAGGTATTGTCTCCATTCTCTCCTTTGATACTCGAGAAGGAAATAAACCTGGGGCAGAAATAGGCAACTTTTTACAAGGGGTAATTGCAGGTTGGTTCTTCCAAAGACTAAAAGTTCTCGATCTTGAAAGACTATTCAGACCTGAATTGCCCGACACCATAGGAAGACTAAGCAAGTTGAGATATCTGGGTTTGAGGTGGACTTATCTTGAATCAATCCCATCGTCCATAGGCAATTTGCACAACCTCCAGACGTTGAATGTGACACACACATATATCCACACTCTCCCTAGTTCAATATGGAAATTGCAGAAACTTCGACACCTGTACTTAAACCAGAGTTACCAGAGTAAATCTGTGCGTCAACAAGGTGGCAGTTCCCTGAAGAATCTTCAGACGTTATGGGGTGTATTTGTGGACAAGGATAGTCCTTTGAAGGATGGGATGGACAAGTTGCTTAACCTCAGAAAATTGGGATTGGAATTCCAATTAACCTCGTCGGAGCAAGAGGTATCATCAGAAAAGATTGTAAAGCTGAAACACCTCAAGTCTTTGAGAATGAGATCAATTAATGGAATGGGAAAATCCGGTGACCTATTCTTGAAGCCTTTGGTAGTCCTAGAGAATCTGTGCAACTTATATTTGTTCGGAAAGCTAAATCCTCCTATCATCCTATCATACCAGAATTCCCCAAAAGCGTCATTAATCTTACTTTGTCAGCCTCTTCTCTTTCTGATGATCCAATGCCCAAGTTAG

Protein Analysis

408

Amino Acids

46.75

Weight (kDa)

9.14

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 50 - 116 6.7e-13 Disease resistance protein Winged helix domain
LRR_14 PF23598 191 - 370 2.3e-29 Leucine-rich repeat region
LRR_8 PF13855 216 - 270 1.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 551
AclWI GGATC 1 cut(s) 1204
AcsI RAATTY 3 cut(s) 168, 953, 1156
AcuI CTGAAG 2 cut(s) 848, 875
AfaI GTAC 1 cut(s) 800
AjnI CCWGG 1 cut(s) 520
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 4 cut(s) 191, 450, 1006, 1126
AluI AGCT 4 cut(s) 191, 450, 1006, 1126
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 1 cut(s) 1204
AlwNI CAGNNNCTG 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 504
ApoI RAATTY 3 cut(s) 168, 953, 1156
AseI ATTAAT 3 cut(s) 185, 1041, 1175
AsuHPI GGTGA 4 cut(s) 82, 335, 455, 1073
AvaI CYCGRG 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 643
BccI CCATC 4 cut(s) 278, 700, 905, 910
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciT130I CCWGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 3 cut(s) 365, 762, 1091
BfuAI ACCTGC 1 cut(s) 551
Bme1390I CCNGG 1 cut(s) 522
BmeT110I CYCGRG 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 643
BpmI CTGGAG 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 436, 1001
BsaJI CCNNGG 2 cut(s) 156, 521
BsaWI WCCGGW 1 cut(s) 1058
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 2 cut(s) 156, 521
BseGI GGATG 3 cut(s) 916, 921, 1140
BseMII CTCAG 1 cut(s) 949
BseRI GAGGAG 1 cut(s) 44
BsgI GTGCAG 2 cut(s) 159, 377
Bsh1285I CGRYCG 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 1 cut(s) 1059
BsmAI GTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 504
Bsp143I GATC 4 cut(s) 400, 592, 1034, 1209
BspCNI CTCAG 1 cut(s) 948
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 1 cut(s) 1204
BssECI CCNNGG 2 cut(s) 156, 521
BssMI GATC 4 cut(s) 400, 592, 1034, 1209
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 1200
BstC8I GCNNGC 2 cut(s) 227, 344
BstDEI CTNAG 2 cut(s) 641, 935
BstEII GGTNACC 1 cut(s) 1061
BstF5I GGATG 3 cut(s) 916, 921, 1140
BstKTI GATC 4 cut(s) 403, 595, 1037, 1212
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 4 cut(s) 400, 592, 1034, 1209
BstMCI CGRYCG 1 cut(s) 412
BstNI CCWGG 1 cut(s) 522
BstPI GGTNACC 1 cut(s) 1061
BstSCI CCNGG 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 643
BtsCI GGATG 3 cut(s) 916, 921, 1140
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 2 cut(s) 227, 344
CaiI CAGNNNCTG 1 cut(s) 242
CseI GACGC 2 cut(s) 821, 1158
Csp6I GTAC 1 cut(s) 799
CviAII CATG 1 cut(s) 440
CviJI RGCY 6 cut(s) 191, 450, 1006, 1078, 1126, 1192
CviKI_1 RGCY 6 cut(s) 191, 450, 1006, 1078, 1126, 1192
CviQI GTAC 1 cut(s) 799
DdeI CTNAG 2 cut(s) 641, 935
DpnI GATC 4 cut(s) 402, 594, 1036, 1211
DpnII GATC 4 cut(s) 400, 592, 1034, 1209
Eam1104I CTCTTC 1 cut(s) 1200
EarI CTCTTC 1 cut(s) 1200
Eco130I CCWWGG 1 cut(s) 156
Eco32I GATATC 1 cut(s) 656
Eco57I CTGAAG 2 cut(s) 848, 875
Eco88I CYCGRG 1 cut(s) 504
Eco91I GGTNACC 1 cut(s) 1061
EcoO65I GGTNACC 1 cut(s) 1061
EcoRI GAATTC 2 cut(s) 953, 1156
EcoRII CCWGG 1 cut(s) 520
EcoRV GATATC 1 cut(s) 656
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 443
FatI CATG 1 cut(s) 439
FauNDI CATATG 1 cut(s) 349
FokI GGATG 3 cut(s) 923, 928, 1127
FspBI CTAG 3 cut(s) 365, 762, 1091
GsuI CTGGAG 1 cut(s) 704
HapII CCGG 1 cut(s) 1059
HgaI GACGC 2 cut(s) 821, 1158
Hin1II CATG 1 cut(s) 443
HincII GTYRAC 1 cut(s) 836
HindII GTYRAC 1 cut(s) 836
HinfI GANTC 6 cut(s) 107, 295, 422, 683, 859, 1096
HpaII CCGG 1 cut(s) 1059
HphI GGTGA 4 cut(s) 82, 335, 455, 1073
Hpy166II GTNNAC 3 cut(s) 672, 836, 889
Hpy188I TCNGA 9 cut(s) 59, 238, 611, 867, 938, 973, 991, 1121, 1206
Hpy188III TCNNGA 7 cut(s) 331, 506, 590, 596, 680, 721, 1072
Hpy8I GTNNAC 3 cut(s) 672, 836, 889
Hpy99I CGWCG 1 cut(s) 973
HpyAV CCTTC 2 cut(s) 503, 901
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 2 cut(s) 725, 869
HpyCH4V TGCA 8 cut(s) 176, 203, 257, 358, 560, 712, 781, 1104
HpyF3I CTNAG 2 cut(s) 641, 935
HpySE526I ACGT 2 cut(s) 725, 869
Hsp92II CATG 1 cut(s) 443
Kzo9I GATC 4 cut(s) 400, 592, 1034, 1209
LmnI GCTCC 1 cut(s) 973
MaeI CTAG 3 cut(s) 365, 762, 1091
MaeII ACGT 2 cut(s) 725, 869
MaeIII GTNAC 4 cut(s) 467, 733, 812, 1061
MalI GATC 4 cut(s) 402, 594, 1036, 1211
MboI GATC 4 cut(s) 400, 592, 1034, 1209
MboII GAAGA 7 cut(s) 218, 260, 562, 648, 854, 868, 1187
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 351, 951
MseI TTAA 7 cut(s) 18, 185, 803, 930, 962, 1041, 1175
MslI CAYNNNNRTG 2 cut(s) 321, 438
MspI CCGG 1 cut(s) 1059
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 349
NdeII GATC 4 cut(s) 400, 592, 1034, 1209
NlaIII CATG 1 cut(s) 443
NmuCI GTSAC 2 cut(s) 733, 1061
OliI CACNNNNGTG 1 cut(s) 321
PaeR7I CTCGAG 1 cut(s) 504
PfeI GAWTC 5 cut(s) 295, 422, 683, 859, 1096
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PshBI ATTAAT 3 cut(s) 185, 1041, 1175
Psp6I CCWGG 1 cut(s) 520
PspEI GGTNACC 1 cut(s) 1061
PspGI CCWGG 1 cut(s) 520
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 800
RsaNI GTAC 1 cut(s) 799
RseI CAYNNNNRTG 2 cut(s) 321, 438
SaqAI TTAA 7 cut(s) 18, 185, 803, 930, 962, 1041, 1175
Sau3AI GATC 4 cut(s) 400, 592, 1034, 1209
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 504
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 321, 438
SmlI CTYRAG 3 cut(s) 451, 504, 1016
SmoI CTYRAG 3 cut(s) 451, 504, 1016
SspMI CTAG 3 cut(s) 365, 762, 1091
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 2 cut(s) 728, 872
TaqI TCGA 4 cut(s) 408, 505, 591, 790
TaqII GACCGA 1 cut(s) 426
TatI WGTACW 1 cut(s) 798
TfiI GAWTC 5 cut(s) 295, 422, 683, 859, 1096
Tru1I TTAA 7 cut(s) 18, 185, 803, 930, 962, 1041, 1175
Tru9I TTAA 7 cut(s) 18, 185, 803, 930, 962, 1041, 1175
TseFI GTSAC 2 cut(s) 733, 1061
Tsp45I GTSAC 2 cut(s) 733, 1061
TspDTI ATGAA 4 cut(s) 261, 422, 428, 435
TspGWI ACGGA 1 cut(s) 193
VspI ATTAAT 3 cut(s) 185, 1041, 1175
XapI RAATTY 3 cut(s) 168, 953, 1156
XhoI CTCGAG 1 cut(s) 504
XspI CTAG 3 cut(s) 365, 762, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.