Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006477.1

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Forward (+)

38021 .. 41452

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006477.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3432 bp

atggaaattgctttcagatccaccgagagcaagtacaaactgattaaagggaaatggaagtttgtgggtgctcttttagaagatttaaatgaagttaccaggttaggggaaaaaataaaacagaaagccggtgcacttttggattccggacagccacaagccggattagctgtacaagtgaatgatactgaggtcaaatggataatgaatgcacgggaattcgtttcttgcgtcgaaaggtttcagagactgagaaagagaaaagaaaatcccatgtggtatttcatcctctgggctgatctgtttccaatggttgatgttttcctccagatgcgatgggccgttggtttcctcgagaagaagaaattatgcgccagcatctgtagatcactggagcacacgaggtccaaagttcgaagtctgcaggacagatgttatgttgatgaatccaaacatcaatctgtcaagtacaaagcatcacctgatggcttaagagctgacgttttgatttcccctcttagcaacctggatccgaatacagatggcgaaggcatcgtcataatgcatttacaacaagtgcatgctttcatggaggatctacaccagctcaaactgctaactgcaagggaagtgtcatgggcgaggaaagcaaacaagactcttgacaaaacaaaggatgccgttgccaccataatcaagagaagagaaaatcagagaaggtggttctcatctgtcactaactggggggaggaggagaaacttaaggcggacatagcgtacattcggagcagggtacctgacctcctggaaacgaaggaaagatatggtatcaaatttatcagacgaggcgcattaaaatctgatccccgatctcctcaacagcataacttgcagaatcatactccagatcctgatacggacttgtcctcctatgtgaccagcattcataattggctgaatcaattgccagctcgagcagcaaaaaagttggaacatgagatcagcttgctgagagatgagttgggccacatgcatagactgttgaaacatacaaatgcggctatatatgctagcaaggttagaaatgcttgcttggagcaattgaagaaaatggccgcagaagcaaagcagtattcagaaacccaaatggaattttcagagaactcaaagcatgtgtccgacatcaagagaatcattgttctccttcggagattcagtcaagcatattccattgaaaaggaggaaccatgctatgcagttggtttggaagaagacacacataaactggtcttacggctgacagaccctggtagagagatcatttccattggaggcatgaagggcattggtaagacaactctggcaaacaaagtctatcaccacggtaccattgcaagccattttaaactccgacgatgggtatctctacctcatcaagggcacgaggaaatagttttaagaagacttgaaaagagtgaagagaaacagagtggaaaagactgggacaagaatgtgcatgatgatctcttgaagaaggagaaataccttctacttttggacaatgtctcatcacaagaagtcttggatgatctcaaacaggagatactcccagcgatggcagaggggagcaagattttagtaaccacaaaccagttggctggcgctgatcaaaatagcactcactacccacttcggctacgaacgcaaaaagaaagctgggagtttttcacccagatggttcacatttctcccaaggaagaagctattgcaaagaaacttgtggcaagaaccggaggcttaccgcttgtgatcttacgtcttgggtatctactgtctatgaaaaaagtgacgtctgagatcgatcaacactattcgaacttgtttgagcatattcttcagggacataaccgaaagccatggtccgatactctggaaatgcatagaaacgatttggaaaatggctactttgaactcttccctggagatttcgaaatccctgcaaggagattagtggctttgtgggttgcaaaggagttatttgaaacagagaatctcgcaaataagcatctgttggagttgattgaccgtaatatgattcaagtcgttcgagagaagcgtaatggggatgtcaagacgtgttgcttgcctcctgcccttcgagaactctggatgcaggacaaaggcgaaaaaattagcagcatagcttattcatggtcccaaagtacaagttcagaacagcagctggtttcctatcattgtgatcgtaacgatgctaccttcaatcgcattcatggtctcaacatgaactcatcaaatggaaagcatccacgctcggttgtcttctttgatactcgagaagggaataaacccggagaggaaataggtgaatttgttcaaaggtgcattgcatgtggtttcttccaaaagcttctggttcttgaccttgaacgtgtattcagacctcagttgccagcgtctatagaaaaattagagcacctgacatatctgggcttgaggtggacttgcttagaggaaatcccgtcacctattggcaacttgatgaagctccgaactctagatttgaagcatacaaatcttcttgctctccctaaatcgatttggaatctgaaagaactcaagcacatatacttcaacaagaattgtcgaatcaaagctaggtctttaccaacttccatttccatgaggaatctgcagacgttatcaggagtatttgtggacaagtcctctgttgtgaagaaccggctggacaagttgatcaagcttcgaaaattgaaattgacattcaatctggcggagcaagaccaaaaggtattggcaaattggattgagctcctgactcaattagaatccttaaagatggtgtcaactgacgagaattttttccctggggttctgaaattggaaagtttgtcaaaccttaggaatctgtccagtctatatctgtttggaaggcttcaaatcccatccatcatacatagtctcccagaaagcctcactcatcttaccttatcagcttccgggatagttgacgatccaatgccaaagttagggatgcttccaaacctgaaatcactttctttgaactctggttcttatcaaggaacagacatggtttgctccacagatcgctttcaggaacttgtggttcttaggctttggcacctggataatctgaaaacaattgatgtgcgaaaaggagcaatgccaaatcttagggagttagagattagatcctgcagcaagttcaaaatcacaagtgatggactgaaagatttaaagttcctccaagaaattaagttggggaatatgcccaatgatcgcacagctgatactgagaaagactttgcagaagctatggcgaagtcccgcggaaaggttcaccttcctgcaatcaaaatagactattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

1143

Amino Acids

131.56

Weight (kDa)

9.22

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1853
Acc65I	GGTACC	2 cut(s)	793, 1385
AccB1I	GGYRCC	3 cut(s)	793, 1385, 3180
AccII	CGCG	1 cut(s)	3390
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	7 cut(s)	767, 1058, 1116, 1802, 2813, 3388, 3390
AclWI	GGATC	8 cut(s)	12, 524, 537, 603, 857, 902, 3047, 3246
AcoI	YGGCCR	1 cut(s)	1113
AcsI	RAATTY	5 cut(s)	218, 833, 1151, 2387, 2896
AcuI	CTGAAG	1 cut(s)	1880
AcyI	GRCGYC	1 cut(s)	1850
AfaI	GTAC	7 cut(s)	35, 174, 470, 779, 795, 1387, 2224
AfiI	CCNNNNNNNGG	7 cut(s)	105, 161, 1417, 1436, 1615, 3068, 3394
AflII	CTTAAG	2 cut(s)	490, 761
AflIII	ACRYGT	2 cut(s)	2135, 2449
AjiI	CACGTC	1 cut(s)	2136
AjnI	CCWGG	7 cut(s)	98, 525, 804, 1306, 1978, 2905, 3183
AjuI	GAANNNNNNNTTGG	2 cut(s)	2680, 2712
Alw21I	GWGCWC	5 cut(s)	73, 136, 399, 2496, 2853
Alw26I	GTCTC	4 cut(s)	241, 1570, 2300, 3005
Alw44I	GTGCAC	1 cut(s)	132
AlwI	GGATC	8 cut(s)	12, 524, 537, 603, 857, 902, 3047, 3246
AlwNI	CAGNNNCTG	5 cut(s)	250, 381, 911, 1307, 2242
Ama87I	CYCGRG	3 cut(s)	353, 972, 2352
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	3 cut(s)	339, 1024, 1113
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	4 cut(s)	977, 2196, 2239, 3258
ApoI	RAATTY	5 cut(s)	218, 833, 1151, 2387, 2896
ArsI	GACNNNNNNTTYG	4 cut(s)	540, 572, 1160, 1192
Asp700I	GAANNNNTTC	3 cut(s)	240, 2391, 2900
Asp718I	GGTACC	2 cut(s)	793, 1385
AspLEI	GCGC	3 cut(s)	374, 851, 1664
AspS9I	GGNCC	5 cut(s)	339, 405, 1024, 1920, 2214
AsuC2I	CCSGG	2 cut(s)	2370, 3040
AsuHPI	GGTGA	6 cut(s)	471, 1370, 1720, 2396, 2535, 3392
AsuII	TTCGAA	4 cut(s)	415, 1874, 1989, 2785
AsuNHI	GCTAGC	1 cut(s)	1070
AvaI	CYCGRG	3 cut(s)	353, 972, 2352
AvaII	GGWCC	3 cut(s)	405, 1920, 2214
AxyI	CCTNAGG	1 cut(s)	2939
BaeGI	GKGCMC	2 cut(s)	136, 1443
BaeI	ACNNNNGTAYC	4 cut(s)	177, 210, 1369, 1402
BamHI	GGATCC	1 cut(s)	529
BanI	GGYRCC	3 cut(s)	793, 1385, 3180
BanII	GRGCYC	1 cut(s)	2853
BarI	GAAGNNNNNNTAC	2 cut(s)	1526, 1558
BauI	CACGAG	2 cut(s)	400, 1442
BbsI	GAAGAC	3 cut(s)	1278, 1468, 2332
Bbv12I	GWGCWC	5 cut(s)	73, 136, 399, 2496, 2853
BbvI	GCAGC	4 cut(s)	989, 2208, 2251, 3270
BceAI	ACGGC	3 cut(s)	326, 665, 1310
BcgI	CGANNNNNNTGC	2 cut(s)	1979, 2013
BciT130I	CCWGG	7 cut(s)	100, 527, 806, 1308, 1980, 2907, 3185
BclI	TGATCA	2 cut(s)	1666, 2775
BcnI	CCSGG	2 cut(s)	2370, 3040
BcoDI	GTCTC	4 cut(s)	241, 1570, 2300, 3005
BfaI	CTAG	3 cut(s)	1071, 2576, 2676
BfmI	CTRYAG	5 cut(s)	382, 422, 2478, 2711, 3256
BfoI	RGCGCY	1 cut(s)	1665
BfrI	CTTAAG	2 cut(s)	490, 761
BisI	GCNGC	6 cut(s)	978, 1059, 1116, 2197, 2240, 3259
BlsI	GCNGC	6 cut(s)	979, 1060, 1117, 2198, 2241, 3260
Bme1390I	CCNGG	9 cut(s)	100, 527, 806, 1308, 1980, 2370, 2907, 3040, 3185
Bme18I	GGWCC	3 cut(s)	405, 1920, 2214
BmeT110I	CYCGRG	3 cut(s)	353, 972, 2352
BmgBI	CACGTC	1 cut(s)	2136
BmgT120I	GGNCC	5 cut(s)	339, 405, 1024, 1920, 2214
BmiI	GGNNCC	6 cut(s)	531, 795, 1245, 1387, 2216, 3182
BmrFI	CCNGG	9 cut(s)	100, 527, 806, 1308, 1980, 2370, 2907, 3040, 3185
BmrI	ACTGGG	2 cut(s)	751, 1510
BmtI	GCTAGC	1 cut(s)	1074
BmuI	ACTGGG	2 cut(s)	751, 1510
BpiI	GAAGAC	3 cut(s)	1278, 1468, 2332
BpmI	CTGGAG	4 cut(s)	311, 413, 888, 2001
Bpu14I	TTCGAA	4 cut(s)	415, 1874, 1989, 2785
BpuEI	CTTGAG	2 cut(s)	2533, 2621
BpuMI	CCSGG	2 cut(s)	2370, 3040
Bsa29I	ATCGAT	2 cut(s)	1860, 2615
BsaBI	GATNNNNATC	1 cut(s)	1420
BsaHI	GRCGYC	1 cut(s)	1850
BsaI	GGTCTC	1 cut(s)	2300
BsaJI	CCNNGG	8 cut(s)	1306, 1381, 1752, 1916, 1978, 2905, 2906, 3388
BsaWI	WCCGGW	2 cut(s)	146, 1790
Bsc4I	CCNNNNNNNGG	7 cut(s)	105, 161, 1417, 1436, 1615, 3068, 3394
Bse118I	RCCGGY	2 cut(s)	128, 2760
Bse1I	ACTGG	6 cut(s)	396, 746, 1290, 1505, 1651, 2952
Bse21I	CCTNAGG	1 cut(s)	2939
Bse3DI	GCAATG	3 cut(s)	1389, 2403, 3228
Bse8I	GATNNNNATC	1 cut(s)	1420
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	7 cut(s)	100, 527, 806, 1308, 1980, 2907, 3185
BseCI	ATCGAT	2 cut(s)	1860, 2615
BseDI	CCNNGG	8 cut(s)	1306, 1381, 1752, 1916, 1978, 2905, 2906, 3388
BseGI	GGATG	8 cut(s)	285, 682, 1591, 2131, 2175, 2323, 2984, 3078
BseJI	GATNNNNATC	1 cut(s)	1420
BseLI	CCNNNNNNNGG	7 cut(s)	105, 161, 1417, 1436, 1615, 3068, 3394
BseMI	GCAATG	3 cut(s)	1389, 2403, 3228
BseMII	CTCAG	6 cut(s)	180, 242, 1001, 1845, 2477, 3345
BseNI	ACTGG	6 cut(s)	396, 746, 1290, 1505, 1651, 2952
BseRI	GAGGAG	3 cut(s)	764, 767, 864
BseSI	GKGCMC	2 cut(s)	136, 1443
BseXI	GCAGC	4 cut(s)	989, 2208, 2251, 3270
BseYI	CCCAGC	2 cut(s)	1609, 1716
Bsh1236I	CGCG	1 cut(s)	3390
BshFI	GGCC	3 cut(s)	341, 1026, 1115
BshNI	GGYRCC	3 cut(s)	793, 1385, 3180
BshVI	ATCGAT	2 cut(s)	1860, 2615
BsiHKAI	GWGCWC	5 cut(s)	73, 136, 399, 2496, 2853
BsiHKCI	CYCGRG	3 cut(s)	353, 972, 2352
BsiSI	CCGG	7 cut(s)	129, 147, 162, 1791, 2370, 2761, 3039
BslFI	GGGAC	4 cut(s)	1517, 1914, 2200, 3370
BslI	CCNNNNNNNGG	7 cut(s)	105, 161, 1417, 1436, 1615, 3068, 3394
BsmAI	GTCTC	4 cut(s)	241, 1570, 2300, 3005
BsmFI	GGGAC	4 cut(s)	1517, 1914, 2200, 3370
BsmI	GAATGC	3 cut(s)	214, 942, 2286
BsnI	GGCC	3 cut(s)	341, 1026, 1115
Bso31I	GGTCTC	1 cut(s)	2300
BsoBI	CYCGRG	3 cut(s)	353, 972, 2352
Bsp119I	TTCGAA	4 cut(s)	415, 1874, 1989, 2785
Bsp1286I	GDGCHC	6 cut(s)	73, 136, 399, 1443, 2496, 2853
Bsp13I	TCCGGA	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	172
Bsp19I	CCATGG	1 cut(s)	1916
BspACI	CCGC	7 cut(s)	767, 1058, 1116, 1802, 2813, 3388, 3390
BspANI	GGCC	3 cut(s)	341, 1026, 1115
BspCNI	CTCAG	6 cut(s)	181, 243, 1002, 1846, 2476, 3346
BspDI	ATCGAT	2 cut(s)	1860, 2615
BspEI	TCCGGA	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	3390
BspLI	GGNNCC	6 cut(s)	531, 795, 1245, 1387, 2216, 3182
BspMAI	CTGCAG	3 cut(s)	426, 2715, 3260
BspOI	GCTAGC	1 cut(s)	1074
BspPI	GGATC	8 cut(s)	12, 524, 537, 603, 857, 902, 3047, 3246
BspT104I	TTCGAA	4 cut(s)	415, 1874, 1989, 2785
BspT107I	GGYRCC	3 cut(s)	793, 1385, 3180
BspTI	CTTAAG	2 cut(s)	490, 761
BspTNI	GGTCTC	1 cut(s)	2300
BsrDI	GCAATG	3 cut(s)	1389, 2403, 3228
BsrFI	RCCGGY	2 cut(s)	128, 2760
BsrGI	TGTACA	1 cut(s)	172
BsrI	ACTGG	6 cut(s)	396, 746, 1290, 1505, 1651, 2952
BssAI	RCCGGY	2 cut(s)	128, 2760
BssECI	CCNNGG	8 cut(s)	1306, 1381, 1752, 1916, 1978, 2905, 2906, 3388
BssNI	GRCGYC	1 cut(s)	1850
BssSI	CACGAG	2 cut(s)	400, 1442
BssT1I	CCWWGG	2 cut(s)	1752, 1916
Bst2BI	CACGAG	2 cut(s)	400, 1442
Bst2UI	CCWGG	7 cut(s)	100, 527, 806, 1308, 1980, 2907, 3185
Bst4CI	ACNGT	4 cut(s)	1041, 1385, 1833, 2087
Bst6I	CTCTTC	3 cut(s)	697, 1473, 1979
BstACI	GRCGYC	1 cut(s)	1850
BstAFI	CTTAAG	2 cut(s)	490, 761
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstAUI	TGTACA	1 cut(s)	172
BstBI	TTCGAA	4 cut(s)	415, 1874, 1989, 2785
BstDSI	CCRYGG	3 cut(s)	1381, 1916, 3388
BstENI	CCTNNNNNAGG	1 cut(s)	1434
BstF5I	GGATG	8 cut(s)	285, 682, 1591, 2131, 2175, 2323, 2984, 3078
BstFNI	CGCG	1 cut(s)	3390
BstH2I	RGCGCY	1 cut(s)	1665
BstHHI	GCGC	3 cut(s)	374, 851, 1664
BstMAI	GTCTC	4 cut(s)	241, 1570, 2300, 3005
BstNI	CCWGG	7 cut(s)	100, 527, 806, 1308, 1980, 2907, 3185
BstNSI	RCATGY	4 cut(s)	584, 1033, 1175, 2412
BstSCI	CCNGG	9 cut(s)	98, 525, 804, 1306, 1978, 2368, 2905, 3038, 3183
BstSFI	CTRYAG	5 cut(s)	382, 422, 2478, 2711, 3256
BstSLI	GKGCMC	2 cut(s)	136, 1443
BstUI	CGCG	1 cut(s)	3390
BstV1I	GCAGC	4 cut(s)	989, 2208, 2251, 3270
BstV2I	GAAGAC	3 cut(s)	1278, 1468, 2332
BstX2I	RGATCY	5 cut(s)	17, 529, 595, 907, 3251
BstXI	CCANNNNNNTGG	1 cut(s)	1658
BstYI	RGATCY	5 cut(s)	17, 529, 595, 907, 3251
Bsu15I	ATCGAT	2 cut(s)	1860, 2615
Bsu36I	CCTNAGG	1 cut(s)	2939
BsuRI	GGCC	3 cut(s)	341, 1026, 1115
BsuTUI	ATCGAT	2 cut(s)	1860, 2615
BtgI	CCRYGG	3 cut(s)	1381, 1916, 3388
BtgZI	GCGATG	2 cut(s)	349, 1628
BtrI	CACGTC	1 cut(s)	2136
BtsCI	GGATG	8 cut(s)	285, 682, 1591, 2131, 2175, 2323, 2984, 3078
BtsIMutI	CAGTG	1 cut(s)	389
CaiI	CAGNNNCTG	5 cut(s)	250, 381, 911, 1307, 2242
CfoI	GCGC	3 cut(s)	374, 851, 1664
Cfr10I	RCCGGY	2 cut(s)	128, 2760
Cfr13I	GGNCC	5 cut(s)	339, 405, 1024, 1920, 2214
Cfr42I	CCGCGG	1 cut(s)	3391
ClaI	ATCGAT	2 cut(s)	1860, 2615
CseI	GACGC	2 cut(s)	220, 2463
CsiI	ACCWGGT	1 cut(s)	98
Csp6I	GTAC	7 cut(s)	34, 173, 469, 778, 794, 1386, 2223
CviQI	GTAC	7 cut(s)	34, 173, 469, 778, 794, 1386, 2223
DraI	TTTAAA	3 cut(s)	87, 1405, 3297
EaeI	YGGCCR	1 cut(s)	1113
Eam1104I	CTCTTC	3 cut(s)	697, 1473, 1979
EarI	CTCTTC	3 cut(s)	697, 1473, 1979
EciI	GGCGGA	2 cut(s)	782, 2828
Ecl136II	GAGCTC	1 cut(s)	2851
Eco130I	CCWWGG	2 cut(s)	1752, 1916
Eco24I	GRGCYC	1 cut(s)	2853
Eco31I	GGTCTC	1 cut(s)	2300
Eco47I	GGWCC	3 cut(s)	405, 1920, 2214
Eco53kI	GAGCTC	1 cut(s)	2851
Eco57I	CTGAAG	1 cut(s)	1880
Eco81I	CCTNAGG	1 cut(s)	2939
Eco88I	CYCGRG	3 cut(s)	353, 972, 2352
EcoICRI	GAGCTC	1 cut(s)	2851
EcoNI	CCTNNNNNAGG	1 cut(s)	1434
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	7 cut(s)	98, 525, 804, 1306, 1978, 2905, 3183
EcoT14I	CCWWGG	2 cut(s)	1752, 1916
EcoT22I	ATGCAT	3 cut(s)	567, 1035, 1941
EcoT38I	GRGCYC	1 cut(s)	2853
ErhI	CCWWGG	2 cut(s)	1752, 1916
FaqI	GGGAC	4 cut(s)	1517, 1914, 2200, 3370
FauI	CCCGC	1 cut(s)	3395
FbaI	TGATCA	2 cut(s)	1666, 2775
Fnu4HI	GCNGC	6 cut(s)	978, 1059, 1116, 2197, 2240, 3259
FokI	GGATG	8 cut(s)	272, 689, 1598, 2138, 2182, 2310, 2971, 3085
FriOI	GRGCYC	1 cut(s)	2853
Fsp4HI	GCNGC	6 cut(s)	978, 1059, 1116, 2197, 2240, 3259
FspBI	CTAG	3 cut(s)	1071, 2576, 2676
GlaI	GCGC	3 cut(s)	373, 850, 1663
GluI	GCNGC	6 cut(s)	978, 1059, 1116, 2197, 2240, 3259
GsaI	CCCAGC	2 cut(s)	1613, 1720
GsuI	CTGGAG	4 cut(s)	311, 413, 888, 2001
HaeII	RGCGCY	1 cut(s)	1665
HaeIII	GGCC	3 cut(s)	341, 1026, 1115
HapII	CCGG	7 cut(s)	129, 147, 162, 1791, 2370, 2761, 3039
HgaI	GACGC	2 cut(s)	220, 2463
HhaI	GCGC	3 cut(s)	374, 851, 1664
Hin1I	GRCGYC	1 cut(s)	1850
Hin6I	GCGC	3 cut(s)	372, 849, 1662
HinP1I	GCGC	3 cut(s)	372, 849, 1662
HincII	GTYRAC	2 cut(s)	2886, 3049
HindII	GTYRAC	2 cut(s)	2886, 3049
HindIII	AAGCTT	2 cut(s)	2426, 2780
HpaII	CCGG	7 cut(s)	129, 147, 162, 1791, 2370, 2761, 3039
HphI	GGTGA	6 cut(s)	471, 1370, 1720, 2396, 2535, 3392
Hpy166II	GTNNAC	7 cut(s)	134, 1741, 2520, 2737, 2886, 3049, 3400
Hpy8I	GTNNAC	7 cut(s)	134, 1741, 2520, 2737, 2886, 3049, 3400
Hpy99I	CGWCG	2 cut(s)	236, 1416
HpyCH4III	ACNGT	4 cut(s)	1041, 1385, 1833, 2087
HpyCH4IV	ACGT	6 cut(s)	501, 1816, 1850, 2135, 2449, 2717
HpySE526I	ACGT	6 cut(s)	501, 1816, 1850, 2135, 2449, 2717
Hsp92I	GRCGYC	1 cut(s)	1850
HspAI	GCGC	3 cut(s)	372, 849, 1662
Kpn2I	TCCGGA	1 cut(s)	146
KpnI	GGTACC	2 cut(s)	797, 1389
Ksp22I	TGATCA	2 cut(s)	1666, 2775
KspI	CCGCGG	1 cut(s)	3391
LmnI	GCTCC	9 cut(s)	394, 786, 1096, 1626, 2571, 2815, 2856, 3143, 3218
Lsp1109I	GCAGC	4 cut(s)	989, 2208, 2251, 3270
MabI	ACCWGGT	1 cut(s)	98
MaeI	CTAG	3 cut(s)	1071, 2576, 2676
MaeII	ACGT	6 cut(s)	501, 1816, 1850, 2135, 2449, 2717
MaeIII	GTNAC	7 cut(s)	94, 733, 934, 1639, 1846, 2264, 2541
MfeI	CAATTG	3 cut(s)	962, 1100, 3201
MflI	RGATCY	5 cut(s)	17, 529, 595, 907, 3251
MhlI	GDGCHC	6 cut(s)	73, 136, 399, 1443, 2496, 2853
MlyI	GAGTC	2 cut(s)	652, 2851
MmeI	TCCRAC	4 cut(s)	969, 1203, 1435, 2052
Mph1103I	ATGCAT	3 cut(s)	567, 1035, 1941
MroI	TCCGGA	1 cut(s)	146
MroXI	GAANNNNTTC	3 cut(s)	240, 2391, 2900
MslI	CAYNNNNRTG	3 cut(s)	1053, 1733, 2699
MspA1I	CMGCKG	3 cut(s)	2242, 3347, 3390
MspCI	CTTAAG	2 cut(s)	490, 761
MspI	CCGG	7 cut(s)	129, 147, 162, 1791, 2370, 2761, 3039
MspR9I	CCNGG	9 cut(s)	100, 527, 806, 1308, 1980, 2370, 2907, 3040, 3185
MunI	CAATTG	3 cut(s)	962, 1100, 3201
Mva1269I	GAATGC	3 cut(s)	214, 942, 2286
MvaI	CCWGG	7 cut(s)	100, 527, 806, 1308, 1980, 2907, 3185
MvnI	CGCG	1 cut(s)	3390
NciI	CCSGG	2 cut(s)	2370, 3040
NcoI	CCATGG	1 cut(s)	1916
NheI	GCTAGC	1 cut(s)	1070
NlaIV	GGNNCC	6 cut(s)	531, 795, 1245, 1387, 2216, 3182
NmuCI	GTSAC	4 cut(s)	733, 934, 1846, 2541
NsiI	ATGCAT	3 cut(s)	567, 1035, 1941
NspI	RCATGY	4 cut(s)	584, 1033, 1175, 2412
NspV	TTCGAA	4 cut(s)	415, 1874, 1989, 2785
PaeI	GCATGC	1 cut(s)	584
PaeR7I	CTCGAG	3 cut(s)	353, 972, 2352
PasI	CCCWGGG	1 cut(s)	2906
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 2113
PctI	GAATGC	3 cut(s)	214, 942, 2286
PdmI	GAANNNNTTC	3 cut(s)	240, 2391, 2900
PflFI	GACNNNGTC	1 cut(s)	1562
PfoI	TCCNGGA	2 cut(s)	804, 3038
PkrI	GCNGC	6 cut(s)	979, 1060, 1117, 2198, 2241, 3260
PleI	GAGTC	2 cut(s)	652, 2851
PpsI	GAGTC	2 cut(s)	652, 2851
Psp124BI	GAGCTC	1 cut(s)	2853
Psp6I	CCWGG	7 cut(s)	98, 525, 804, 1306, 1978, 2905, 3183
PspFI	CCCAGC	2 cut(s)	1609, 1716
PspGI	CCWGG	7 cut(s)	98, 525, 804, 1306, 1978, 2905, 3183
PspN4I	GGNNCC	6 cut(s)	531, 795, 1245, 1387, 2216, 3182
PspPI	GGNCC	5 cut(s)	339, 405, 1024, 1920, 2214
PspXI	VCTCGAGB	1 cut(s)	972
PstI	CTGCAG	3 cut(s)	426, 2715, 3260
PstNI	CAGNNNCTG	5 cut(s)	250, 381, 911, 1307, 2242
PsuI	RGATCY	5 cut(s)	17, 529, 595, 907, 3251
PsyI	GACNNNGTC	1 cut(s)	1562
PvuII	CAGCTG	2 cut(s)	2242, 3347
RsaI	GTAC	7 cut(s)	35, 174, 470, 779, 795, 1387, 2224
RsaNI	GTAC	7 cut(s)	34, 173, 469, 778, 794, 1386, 2223
RseI	CAYNNNNRTG	3 cut(s)	1053, 1733, 2699
SacI	GAGCTC	1 cut(s)	2853
SacII	CCGCGG	1 cut(s)	3391
SatI	GCNGC	6 cut(s)	978, 1059, 1116, 2197, 2240, 3259
Sau96I	GGNCC	5 cut(s)	339, 405, 1024, 1920, 2214
SchI	GAGTC	2 cut(s)	652, 2851
ScrFI	CCNGG	9 cut(s)	100, 527, 806, 1308, 1980, 2370, 2907, 3040, 3185
SduI	GDGCHC	6 cut(s)	73, 136, 399, 1443, 2496, 2853
SexAI	ACCWGGT	1 cut(s)	98
SfcI	CTRYAG	5 cut(s)	382, 422, 2478, 2711, 3256
Sfr274I	CTCGAG	3 cut(s)	353, 972, 2352
Sfr303I	CCGCGG	1 cut(s)	3391
SfuI	TTCGAA	4 cut(s)	415, 1874, 1989, 2785
SgrBI	CCGCGG	1 cut(s)	3391
SinI	GGWCC	3 cut(s)	405, 1920, 2214
SlaI	CTCGAG	3 cut(s)	353, 972, 2352
SmiI	ATTTAAAT	1 cut(s)	87
SmiMI	CAYNNNNRTG	3 cut(s)	1053, 1733, 2699
SmlI	CTYRAG	7 cut(s)	353, 490, 761, 972, 2352, 2512, 2636
SmoI	CTYRAG	7 cut(s)	353, 490, 761, 972, 2352, 2512, 2636
SphI	GCATGC	1 cut(s)	584
SsiI	CCGC	7 cut(s)	767, 1058, 1116, 1802, 2813, 3388, 3390
SspMI	CTAG	3 cut(s)	1071, 2576, 2676
SstI	GAGCTC	1 cut(s)	2853
StyD4I	CCNGG	9 cut(s)	98, 525, 804, 1306, 1978, 2368, 2905, 3038, 3183
StyI	CCWWGG	2 cut(s)	1752, 1916
SwaI	ATTTAAAT	1 cut(s)	87
TaaI	ACNGT	4 cut(s)	1041, 1385, 1833, 2087
TaiI	ACGT	6 cut(s)	504, 1819, 1853, 2138, 2452, 2720
TatI	WGTACW	4 cut(s)	33, 172, 468, 2222
TauI	GCSGC	2 cut(s)	1061, 1118
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	4 cut(s)	733, 934, 1846, 2541
TseI	GCWGC	4 cut(s)	977, 2196, 2239, 3258
Tsp45I	GTSAC	4 cut(s)	733, 934, 1846, 2541
TspGWI	ACGGA	1 cut(s)	932
TspRI	CASTG	1 cut(s)	396
Tth111I	GACNNNGTC	1 cut(s)	1562
Vha464I	CTTAAG	2 cut(s)	490, 761
VneI	GTGCAC	1 cut(s)	132
VpaK11BI	GGWCC	3 cut(s)	405, 1920, 2214
XagI	CCTNNNNNAGG	1 cut(s)	1434
XapI	RAATTY	5 cut(s)	218, 833, 1151, 2387, 2896
XbaI	TCTAGA	1 cut(s)	2575
XceI	RCATGY	4 cut(s)	584, 1033, 1175, 2412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1651
XhoI	CTCGAG	3 cut(s)	353, 972, 2352
XmnI	GAANNNNTTC	3 cut(s)	240, 2391, 2900
XspI	CTAG	3 cut(s)	1071, 2576, 2676
ZraI	GACGTC	1 cut(s)	1851
Zsp2I	ATGCAT	3 cut(s)	567, 1035, 1941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.