RLG00000020154

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
61819443 .. 61823130
3688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020154

Sequence Viewer

Length: 3309 bp
ATGGCCGGAGTATTCGACCTCTGCTGCATTTTCCTTGGGTTTTACGTCCTTTGTGTCGTCGCAAGCGAACTTGCTTACAGATACTCGAAGGGGAAGTACAAGTGGATTAAAAGAGAACTGAAGTTTTTGAGTGCTCTTCTTAAAGATTTTGACGAGGTTACCATGTCAGGGAATCAAATAACACAGGAAATTGGAGTAACTGTGCAAGTAATGAAGGAGAGGGAGGAAAACTGGAAGAAGAGAGCAAGAACTGTTGCTGATGAAGCAACCTTGTCCCTTCAAAGCTTTGCAAAACTGACGAAGAGAAGAAGTTATCACAAGCGGCTTCTTTACGTCATTCTTGATCCGGTAGCGGTGGTTGATGCTGTCCTTGCAATGAACATGTTCGAGCAGAGGATAAATAATATTGTTGGGATGAATCGGAAAGGAGTGAAGCAGACCACAGGTGCCAGTGACATTAATGTATCACTGGAGCAGTCAAGGTCCAAGATCAGAAGCCTTGTGAATAGATTCAGTGTTGATGAGATTGAGTCGGTTATGTCCAGACCACCGAGAGCTGATGAATTGACTTTATATCCAAAGTACGTGATGACTGGAGACCTAGATTTGTTGTGTGGCATTCATCATGAGCAAATAAAGTCCGCCGCGATGCATTTACAGCTACTGCATGCTTTCATGGAAGATTTACAGCGGCTCAAATTGGTGGAAAGTGATATGGAAAGGTGCTGGATGACAGAAGCAATTGAAACCATTGAGGAAGCAAAGGCTGTCATCAACAGAAATCAGAGAATGTGGCTTTCAGAATTCAGTGATGGGATGGCCAGGCGGAAGCTTAAGAAGGGTATAATGCACATTGGCGCCCGCATCTCTGACCTTCAGGAAACAAAAGAAAAATATGGTATCAAATTCATCCGGCGACAATCATCAAAATCTGCCGACAGGTTTCCTCAACAGCATGCCTCTCAATACCTTCCAACTACAGATGATACTTGTTTGTCATCTCCGGTCAGGAACATTCGTAATTGGCTCAGTCAAGTGCAAGAAACAAGCACCAACTCAGTACAAGATCAGTTGGAGCAGGTTCATAAACTCTTGCAACATACAAAAGGAACTGAAGATTACGGTGCTGTTAATTTAAGAAATACTTGCTGGGAGCTCCTGAAAAAAAAAGCATCCGAAGCAGACCAGCAATTGATGTCAAACATTCCCTCAAGAATGATATTAACCCGAATTAAGAATACTCTTAGTCTTCTTCTGAGATGCCTACAAGTATATTCAATTGAGGTAAGGGTGGATTCATGCTCAGTAGTTGGTTTGGAAGAAGACATACATGCACTAGTCTCAACTCTCACTACGGAGAGTGGATCTGCTAGTTCTATCATATCCATTGTGGGGATGAAAGGCATCGGTAAGACCACACTGGCCAAGAAAGTATATGAGCATGACGACATTCGAAGCCATTTTAAAGTCCGTCGTTGGGTATCTATACCTCAACAGTATGATGATGAAAACGCACTTTTCAGTAGTGCAGGAAACCAGGTGCTGGAGACGCAAAATAAGGGGTACGAAAAACAACTGTTGATGAAATCAATGCAGGATTTCTTCAAGGAACTTGGTAAGAAAAACTCCAAGTGCCTCTTAATTTTTGACAATGTCTCGTCAAACAAAGAAATGTATGCTCTCAAGACAGCATTTTCCCCAGGGAGAAATGGCAGTATTGTTCTAATCACACGCAACAAGACCGTTGGTTCAAATGCTGATCAAAATAGCATTCCCCACCAAGTTCGGCTACGAACTAAAGAAGAGAGCTGGGAGCTTTTTAGCCAAATGGTGGAGTTCTCTGCTGAAGAAATGACTAGTGCAAAGGAAGTTGTAGGATGGAAACTTGGAGGCCTCCCACTTGACATCATGACTGTTGGCTTTCTACTGTGGGGGAAGAAAGTCACATCCGAGGAAGTTTTCAGGGCGGTTGACCGTATCACTCAAGGACAGAACCAAAGTCCATGGTCAGAGAATCTGGCAATGATTGAAGAAGAGTTGCAGTTCCATATGATTCTGAGAAAATGTTTTTCTTATTTCAAACTCTTCCCAAGAGAATCTGAAATCCCCATTAGAAGAATTCTGGCTTCCTTAGTTGCACAAGGGTTTGTACAACTAAGCAGAGATCAGAAAATAAATCTAGAAAGTGTAGCATTGGAGTATTTATCAGAGTTGATTGGCCGGAGTATGATTCAAGTAGTTCAAAGGAAGCCTAATGGAATGTTGAAGACATGTCGCATGCCTCCTGCTGTGCATGATCTCTTGTTTGAAGACAAAGCCAAACAATCATTCTCATACGCAACTACAGGTTTTGAAGGGCAACTTGCCTTTCAGTTTGACGATTATGGTACTGGTGCCAGTTTCCTTCCCATTCATGGTCTCAACACAAGTTTGCCAAATGCTCTGCGGAAAGAAAGAATTCTAGTTTTTGAGAATGGAGAAGGAAACAAACCAAGAATGGAAGGTGAATTTCTTGGCAGACGCATTATGGCTGGTGCCTTCTCACAGCTACTTGTTCTAGACTTTGAATGTGTAAGCATCTCTCAATTGCCGACAATCCTTGGAAAACTAAAGCAGCTGGCATATCTTGGCTTAAGACGGACTGAGCTGGAGACGATTCCAGCATCTATAGGGAACTTGGTGAATCTTCAAACCCTGGATTTGAAGCATACTCATGTTCACACTCTCCCTGGTTCAATTTGGAAACTGAAGAATCTTCGGCATCTATACATGCACCAGAGATGTCGAATCAAATTTATGGCTTTACCAATGGCCATTTCAATGAGGAATCTGCAGACACTATCAGGTATATTCTTGGGTAAGATTAACCTTGTAAAGGACCGGCTTGACAAGTTGATCCACCTTCGAAAACTGGAATTGGCATTCCAGCTGAAACCAACAGAGCAAAAGGTGTTGGAGAAGTGGATTGTGAAGCTAACAGATTTACAGTTTTTAAAGTTGAAATCATTTAGTGCAAATGGTGAACTTCCAAAGCTGGAGCGTATCTCAGGCCTTAAGAACCTGCACAGCCTGTATTTATTTGGAAAGCTTGAATACTCATTCATCACTCGACTCCCTGAAAGCCTCACTCATCTTACCTTAGCAGCTTCTAGCCTCAGAAAAGATCCAATGCCAGAGTTAGGGAAGCTTCCAAAGCTGAAATCACTTTCTCTGAAGTCTGGTTCTTATCAAGGAACAGGCATGGTGACATTCAGAATGACTATGCAGCAGCTGGGAGCCTGGGACTCCTCTGATCACATTTTTAGGTAA

Protein Analysis

1103

Amino Acids

125.74

Weight (kDa)

9.37

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 440 - 611 4.3e-27 NB-ARC domain
WHD_DRP PF23559 695 - 767 8e-12 Disease resistance protein Winged helix domain
LRR_14 PF23598 846 - 1077 1.5e-29 Leucine-rich repeat region
LRR_8 PF13855 872 - 925 1.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1069, 3069
AccB1I GGYRCC 4 cut(s) 446, 857, 2393, 2534
AccB7I CCANNNNNTGG 2 cut(s) 1543, 1831
AccII CGCG 1 cut(s) 647
AciI CCGC 9 cut(s) 322, 353, 642, 645, 691, 826, 862, 1967, 2446
AclWI GGATC 4 cut(s) 338, 1372, 2890, 3158
AcoI YGGCCR 5 cut(s) 3, 819, 1422, 2218, 2811
AcsI RAATTY 6 cut(s) 803, 905, 2118, 2457, 2507, 2792
AcuI CTGAAG 6 cut(s) 140, 860, 1134, 1866, 2768, 3233
AcyI GRCGYC 1 cut(s) 858
AfaI GTAC 6 cut(s) 98, 584, 1062, 1565, 2151, 2389
AfiI CCNNNNNNNGG 8 cut(s) 168, 1392, 1477, 1543, 1831, 2414, 2875, 3179
AflII CTTAAG 3 cut(s) 833, 2632, 3053
AflIII ACRYGT 2 cut(s) 381, 2270
AhlI ACTAGT 2 cut(s) 1336, 1856
AjnI CCWGG 6 cut(s) 821, 1536, 1699, 2694, 2728, 3278
AjuI GAANNNNNNNTTGG 4 cut(s) 2312, 2344, 2800, 2832
Alw21I GWGCWC 2 cut(s) 136, 1158
Alw26I GTCTC 6 cut(s) 591, 1345, 1541, 1660, 2423, 2645
AlwI GGATC 4 cut(s) 338, 1372, 2890, 3158
AlwNI CAGNNNCTG 3 cut(s) 664, 1543, 3271
AoxI GGCC 7 cut(s) 3, 819, 1422, 1891, 2218, 2811, 3049
ApeKI GCWGC 5 cut(s) 24, 2614, 3143, 3265, 3268
ApoI RAATTY 6 cut(s) 803, 905, 2118, 2457, 2507, 2792
AseI ATTAAT 1 cut(s) 459
Asp700I GAANNNNTTC 3 cut(s) 383, 509, 2457
AspLEI GCGC 1 cut(s) 860
AspS9I GGNCC 2 cut(s) 483, 2878
AsuHPI GGTGA 4 cut(s) 2516, 2692, 3032, 3256
AsuII TTCGAA 2 cut(s) 1453, 2905
AvaII GGWCC 2 cut(s) 483, 2878
BalI TGGCCA 3 cut(s) 821, 1424, 2813
BanI GGYRCC 4 cut(s) 446, 857, 2393, 2534
BanII GRGCYC 1 cut(s) 1158
BarI GAAGNNNNNNTAC 4 cut(s) 80, 112, 1311, 1343
BbsI GAAGAC 4 cut(s) 1241, 1329, 2273, 2316
Bbv12I GWGCWC 2 cut(s) 136, 1158
BbvI GCAGC 5 cut(s) 11, 2626, 3155, 3277, 3280
BccI CCATC 3 cut(s) 806, 811, 1872
BciT130I CCWGG 6 cut(s) 823, 1538, 1701, 2696, 2730, 3280
BclI TGATCA 2 cut(s) 1759, 3292
BcoDI GTCTC 6 cut(s) 591, 1345, 1541, 1660, 2423, 2645
BcuI ACTAGT 2 cut(s) 1336, 1856
BfaI CTAG 8 cut(s) 602, 1337, 1371, 1857, 2180, 2462, 2558, 3150
BfmI CTRYAG 4 cut(s) 978, 2343, 2667, 2831
BfoI RGCGCY 1 cut(s) 861
BfrI CTTAAG 3 cut(s) 833, 2632, 3053
BfuAI ACCTGC 2 cut(s) 1069, 3069
BisI GCNGC 8 cut(s) 25, 323, 645, 692, 2615, 3144, 3266, 3269
BlsI GCNGC 8 cut(s) 26, 324, 646, 693, 2616, 3145, 3267, 3270
Bme1390I CCNGG 6 cut(s) 823, 1538, 1701, 2696, 2730, 3280
Bme18I GGWCC 2 cut(s) 483, 2878
BmgT120I GGNCC 2 cut(s) 483, 2878
BmiI GGNNCC 5 cut(s) 448, 859, 2395, 2536, 3277
BmrFI CCNGG 6 cut(s) 823, 1538, 1701, 2696, 2730, 3280
BmsI GCATC 9 cut(s) 352, 639, 873, 1181, 1250, 1413, 2586, 2672, 2770
BpiI GAAGAC 4 cut(s) 1241, 1329, 2273, 2316
BplI GAGNNNNNCTC 2 cut(s) 3029, 3061
BpmI CTGGAG 5 cut(s) 491, 615, 1565, 2669, 3056
Bpu10I CCTNAGC 1 cut(s) 3139
Bpu14I TTCGAA 2 cut(s) 1453, 2905
BpuEI CTTGAG 3 cut(s) 1195, 1667, 1968
BsaAI YACGTR 1 cut(s) 586
BsaHI GRCGYC 1 cut(s) 858
BsaI GGTCTC 2 cut(s) 591, 2423
BsaJI CCNNGG 9 cut(s) 34, 1699, 1700, 1950, 2003, 2599, 2694, 2728, 3279
BsaWI WCCGGW 2 cut(s) 346, 1003
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 8 cut(s) 168, 1392, 1477, 1543, 1831, 2414, 2875, 3179
Bse118I RCCGGY 1 cut(s) 2880
Bse1I ACTGG 8 cut(s) 236, 450, 474, 598, 1425, 2395, 2397, 2916
Bse3DI GCAATG 2 cut(s) 381, 2028
BseBI CCWGG 6 cut(s) 823, 1538, 1701, 2696, 2730, 3280
BseDI CCNNGG 9 cut(s) 34, 1699, 1700, 1950, 2003, 2599, 2694, 2728, 3279
BseGI GGATG 8 cut(s) 420, 735, 822, 909, 1172, 1401, 1883, 1946
BseLI CCNNNNNNNGG 8 cut(s) 168, 1392, 1477, 1543, 1831, 2414, 2875, 3179
BseMI GCAATG 2 cut(s) 381, 2028
BseMII CTCAG 8 cut(s) 1042, 1071, 1247, 1317, 2048, 2634, 3060, 3169
BseNI ACTGG 8 cut(s) 236, 450, 474, 598, 1425, 2395, 2397, 2916
BseRI GAGGAG 1 cut(s) 3277
BseXI GCAGC 5 cut(s) 11, 2626, 3155, 3277, 3280
BseYI CCCAGC 3 cut(s) 1149, 1809, 3271
BsgI GTGCAG 2 cut(s) 1548, 3047
Bsh1236I CGCG 1 cut(s) 647
BshFI GGCC 7 cut(s) 5, 821, 1424, 1893, 2220, 2813, 3051
BshNI GGYRCC 4 cut(s) 446, 857, 2393, 2534
BsiHKAI GWGCWC 2 cut(s) 136, 1158
BsiSI CCGG 6 cut(s) 6, 347, 913, 1004, 2221, 2881
BslFI GGGAC 2 cut(s) 259, 3296
BslI CCNNNNNNNGG 8 cut(s) 168, 1392, 1477, 1543, 1831, 2414, 2875, 3179
BsmAI GTCTC 6 cut(s) 591, 1345, 1541, 1660, 2423, 2645
BsmBI CGTCTC 2 cut(s) 1541, 2645
BsmFI GGGAC 2 cut(s) 259, 3296
BsmI GAATGC 3 cut(s) 618, 1770, 2921
BsnI GGCC 7 cut(s) 5, 821, 1424, 1893, 2220, 2813, 3051
Bso31I GGTCTC 2 cut(s) 591, 2423
Bsp119I TTCGAA 2 cut(s) 1453, 2905
Bsp1286I GDGCHC 2 cut(s) 136, 1158
Bsp1407I TGTACA 1 cut(s) 2149
Bsp19I CCATGG 1 cut(s) 2003
BspACI CCGC 9 cut(s) 322, 353, 642, 645, 691, 826, 862, 1967, 2446
BspANI GGCC 7 cut(s) 5, 821, 1424, 1893, 2220, 2813, 3051
BspCNI CTCAG 8 cut(s) 1041, 1070, 1248, 1316, 2049, 2635, 3059, 3168
BspFNI CGCG 1 cut(s) 647
BspHI TCATGA 2 cut(s) 625, 1908
BspLI GGNNCC 5 cut(s) 448, 859, 2395, 2536, 3277
BspMAI CTGCAG 1 cut(s) 2835
BspMI ACCTGC 2 cut(s) 1069, 3069
BspPI GGATC 4 cut(s) 338, 1372, 2890, 3158
BspQI GCTCTTC 1 cut(s) 141
BspT104I TTCGAA 2 cut(s) 1453, 2905
BspT107I GGYRCC 4 cut(s) 446, 857, 2393, 2534
BspTI CTTAAG 3 cut(s) 833, 2632, 3053
BspTNI GGTCTC 2 cut(s) 591, 2423
BsrDI GCAATG 2 cut(s) 381, 2028
BsrFI RCCGGY 1 cut(s) 2880
BsrGI TGTACA 1 cut(s) 2149
BsrI ACTGG 8 cut(s) 236, 450, 474, 598, 1425, 2395, 2397, 2916
BssAI RCCGGY 1 cut(s) 2880
BssECI CCNNGG 9 cut(s) 34, 1699, 1700, 1950, 2003, 2599, 2694, 2728, 3279
BssNI GRCGYC 1 cut(s) 858
BssT1I CCWWGG 3 cut(s) 34, 2003, 2599
Bst2UI CCWGG 6 cut(s) 823, 1538, 1701, 2696, 2730, 3280
Bst6I CTCTTC 6 cut(s) 141, 233, 296, 1797, 2028, 2090
BstACI GRCGYC 1 cut(s) 858
BstAFI CTTAAG 3 cut(s) 833, 2632, 3053
BstAUI TGTACA 1 cut(s) 2149
BstBAI YACGTR 1 cut(s) 586
BstBI TTCGAA 2 cut(s) 1453, 2905
BstC8I GCNNGC 6 cut(s) 64, 669, 862, 957, 2279, 2619
BstDSI CCRYGG 1 cut(s) 2003
BstEII GGTNACC 1 cut(s) 157
BstENI CCTNNNNNAGG 1 cut(s) 2873
BstF5I GGATG 8 cut(s) 420, 735, 822, 909, 1172, 1401, 1883, 1946
BstFNI CGCG 1 cut(s) 647
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 1 cut(s) 860
BstMAI GTCTC 6 cut(s) 591, 1345, 1541, 1660, 2423, 2645
BstMWI GCNNNNNNNGC 6 cut(s) 263, 371, 658, 1178, 1549, 3193
BstNI CCWGG 6 cut(s) 823, 1538, 1701, 2696, 2730, 3280
BstNSI RCATGY 7 cut(s) 385, 671, 959, 1334, 2274, 2281, 2773
BstPI GGTNACC 1 cut(s) 157
BstSCI CCNGG 6 cut(s) 821, 1536, 1699, 2694, 2728, 3278
BstSFI CTRYAG 4 cut(s) 978, 2343, 2667, 2831
BstUI CGCG 1 cut(s) 647
BstV1I GCAGC 5 cut(s) 11, 2626, 3155, 3277, 3280
BstV2I GAAGAC 4 cut(s) 1241, 1329, 2273, 2316
BstX2I RGATCY 2 cut(s) 1364, 3163
BstYI RGATCY 2 cut(s) 1364, 3163
BsuRI GGCC 7 cut(s) 5, 821, 1424, 1893, 2220, 2813, 3051
BtgI CCRYGG 1 cut(s) 2003
BtgZI GCGATG 1 cut(s) 662
BtsCI GGATG 8 cut(s) 420, 735, 822, 909, 1172, 1401, 1883, 1946
BtsIMutI CAGTG 5 cut(s) 457, 467, 520, 814, 1418
BveI ACCTGC 2 cut(s) 1069, 3069
Cac8I GCNNGC 6 cut(s) 64, 669, 862, 957, 2279, 2619
CaiI CAGNNNCTG 3 cut(s) 664, 1543, 3271
CciI TCATGA 2 cut(s) 625, 1908
CfoI GCGC 1 cut(s) 860
Cfr10I RCCGGY 1 cut(s) 2880
Cfr13I GGNCC 2 cut(s) 483, 2878
CseI GACGC 2 cut(s) 1558, 2529
CsiI ACCWGGT 1 cut(s) 1536
Csp6I GTAC 6 cut(s) 97, 583, 1061, 1564, 2150, 2388
CviQI GTAC 6 cut(s) 97, 583, 1061, 1564, 2150, 2388
DinI GGCGCC 1 cut(s) 859
DraI TTTAAA 2 cut(s) 1465, 2994
EaeI YGGCCR 5 cut(s) 3, 819, 1422, 2218, 2811
Eam1104I CTCTTC 6 cut(s) 141, 233, 296, 1797, 2028, 2090
EarI CTCTTC 6 cut(s) 141, 233, 296, 1797, 2028, 2090
EciI GGCGGA 2 cut(s) 631, 841
Ecl136II GAGCTC 1 cut(s) 1156
Eco130I CCWWGG 3 cut(s) 34, 2003, 2599
Eco147I AGGCCT 2 cut(s) 1893, 3051
Eco24I GRGCYC 1 cut(s) 1158
Eco31I GGTCTC 2 cut(s) 591, 2423
Eco47I GGWCC 2 cut(s) 483, 2878
Eco53kI GAGCTC 1 cut(s) 1156
Eco57I CTGAAG 6 cut(s) 140, 860, 1134, 1866, 2768, 3233
Eco91I GGTNACC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 1156
EcoNI CCTNNNNNAGG 1 cut(s) 2873
EcoO65I GGTNACC 1 cut(s) 157
EcoRI GAATTC 3 cut(s) 803, 2118, 2457
EcoRII CCWGG 6 cut(s) 821, 1536, 1699, 2694, 2728, 3278
EcoT14I CCWWGG 3 cut(s) 34, 2003, 2599
EcoT22I ATGCAT 1 cut(s) 654
EcoT38I GRGCYC 1 cut(s) 1158
EgeI GGCGCC 1 cut(s) 859
EheI GGCGCC 1 cut(s) 859
ErhI CCWWGG 3 cut(s) 34, 2003, 2599
Esp3I CGTCTC 2 cut(s) 1541, 2645
FalI AAGNNNNNCTT 6 cut(s) 1129, 1161, 1622, 1654, 2346, 2378
FaqI GGGAC 2 cut(s) 259, 3296
FauI CCCGC 1 cut(s) 869
FauNDI CATATG 1 cut(s) 2049
FbaI TGATCA 2 cut(s) 1759, 3292
Fnu4HI GCNGC 8 cut(s) 25, 323, 645, 692, 2615, 3144, 3266, 3269
FokI GGATG 8 cut(s) 427, 742, 829, 896, 1159, 1408, 1890, 1933
FriOI GRGCYC 1 cut(s) 1158
Fsp4HI GCNGC 8 cut(s) 25, 323, 645, 692, 2615, 3144, 3266, 3269
FspBI CTAG 8 cut(s) 602, 1337, 1371, 1857, 2180, 2462, 2558, 3150
GlaI GCGC 1 cut(s) 859
GluI GCNGC 8 cut(s) 25, 323, 645, 692, 2615, 3144, 3266, 3269
GsaI CCCAGC 3 cut(s) 1153, 1813, 3275
GsuI CTGGAG 5 cut(s) 491, 615, 1565, 2669, 3056
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 7 cut(s) 5, 821, 1424, 1893, 2220, 2813, 3051
HapII CCGG 6 cut(s) 6, 347, 913, 1004, 2221, 2881
HgaI GACGC 2 cut(s) 1558, 2529
HhaI GCGC 1 cut(s) 860
Hin1I GRCGYC 1 cut(s) 858
Hin6I GCGC 1 cut(s) 858
HinP1I GCGC 1 cut(s) 858
HincII GTYRAC 1 cut(s) 1972
HindII GTYRAC 1 cut(s) 1972
HindIII AAGCTT 4 cut(s) 283, 830, 3086, 3185
HpaII CCGG 6 cut(s) 6, 347, 913, 1004, 2221, 2881
HphI GGTGA 4 cut(s) 2516, 2692, 3032, 3256
Hpy166II GTNNAC 3 cut(s) 1972, 2719, 3023
Hpy8I GTNNAC 3 cut(s) 1972, 2719, 3023
Hpy99I CGWCG 2 cut(s) 62, 1476
HpyCH4IV ACGT 3 cut(s) 45, 333, 585
HpyF10VI GCNNNNNNNGC 6 cut(s) 263, 371, 658, 1178, 1549, 3193
HpySE526I ACGT 3 cut(s) 45, 333, 585
Hsp92I GRCGYC 1 cut(s) 858
HspAI GCGC 1 cut(s) 858
KasI GGCGCC 1 cut(s) 857
Ksp22I TGATCA 2 cut(s) 1759, 3292
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 7 cut(s) 472, 1075, 1153, 1161, 1813, 3037, 3275
Lsp1109I GCAGC 5 cut(s) 11, 2626, 3155, 3277, 3280
LweI GCATC 9 cut(s) 352, 639, 873, 1181, 1250, 1413, 2586, 2672, 2770
MabI ACCWGGT 1 cut(s) 1536
MaeI CTAG 8 cut(s) 602, 1337, 1371, 1857, 2180, 2462, 2558, 3150
MaeII ACGT 3 cut(s) 45, 333, 585
MaeIII GTNAC 5 cut(s) 157, 196, 452, 1942, 3244
MfeI CAATTG 4 cut(s) 741, 1190, 1278, 2585
MflI RGATCY 2 cut(s) 1364, 3163
MhlI GDGCHC 2 cut(s) 136, 1158
MlsI TGGCCA 3 cut(s) 821, 1424, 2813
MluNI TGGCCA 3 cut(s) 821, 1424, 2813
Mly113I GGCGCC 1 cut(s) 858
MlyI GAGTC 3 cut(s) 539, 3105, 3278
MmeI TCCRAC 3 cut(s) 998, 1053, 2934
Mox20I TGGCCA 3 cut(s) 821, 1424, 2813
Mph1103I ATGCAT 1 cut(s) 654
MroXI GAANNNNTTC 3 cut(s) 383, 509, 2457
MscI TGGCCA 3 cut(s) 821, 1424, 2813
MslI CAYNNNNRTG 2 cut(s) 2712, 2819
Msp20I TGGCCA 3 cut(s) 821, 1424, 2813
MspA1I CMGCKG 4 cut(s) 691, 2617, 2929, 3271
MspCI CTTAAG 3 cut(s) 833, 2632, 3053
MspI CCGG 6 cut(s) 6, 347, 913, 1004, 2221, 2881
MspR9I CCNGG 6 cut(s) 823, 1538, 1701, 2696, 2730, 3280
MunI CAATTG 4 cut(s) 741, 1190, 1278, 2585
Mva1269I GAATGC 3 cut(s) 618, 1770, 2921
MvaI CCWGG 6 cut(s) 823, 1538, 1701, 2696, 2730, 3280
MvnI CGCG 1 cut(s) 647
MwoI GCNNNNNNNGC 6 cut(s) 263, 371, 658, 1178, 1549, 3193
NarI GGCGCC 1 cut(s) 858
NcoI CCATGG 1 cut(s) 2003
NdeI CATATG 1 cut(s) 2049
NlaIV GGNNCC 5 cut(s) 448, 859, 2395, 2536, 3277
NmuCI GTSAC 3 cut(s) 452, 1942, 3244
NsiI ATGCAT 1 cut(s) 654
NspI RCATGY 7 cut(s) 385, 671, 959, 1334, 2274, 2281, 2773
NspV TTCGAA 2 cut(s) 1453, 2905
PaeI GCATGC 3 cut(s) 671, 959, 2281
PagI TCATGA 2 cut(s) 625, 1908
PasI CCCWGGG 1 cut(s) 1700
PceI AGGCCT 2 cut(s) 1893, 3051
PciI ACATGT 2 cut(s) 381, 2270
PciSI GCTCTTC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 3 cut(s) 618, 1770, 2921
PdmI GAANNNNTTC 3 cut(s) 383, 509, 2457
PflFI GACNNNGTC 1 cut(s) 1652
PflMI CCANNNNNTGG 2 cut(s) 1543, 1831
PkrI GCNGC 8 cut(s) 26, 324, 646, 693, 2616, 3145, 3267, 3270
PleI GAGTC 3 cut(s) 538, 3105, 3278
PluTI GGCGCC 1 cut(s) 861
PpsI GAGTC 3 cut(s) 538, 3105, 3278
Ppu21I YACGTR 1 cut(s) 586
PscI ACATGT 2 cut(s) 381, 2270
PshBI ATTAAT 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 1158
Psp6I CCWGG 6 cut(s) 821, 1536, 1699, 2694, 2728, 3278
PspEI GGTNACC 1 cut(s) 157
PspFI CCCAGC 3 cut(s) 1149, 1809, 3271
PspGI CCWGG 6 cut(s) 821, 1536, 1699, 2694, 2728, 3278
PspN4I GGNNCC 5 cut(s) 448, 859, 2395, 2536, 3277
PspPI GGNCC 2 cut(s) 483, 2878
PstI CTGCAG 1 cut(s) 2835
PstNI CAGNNNCTG 3 cut(s) 664, 1543, 3271
PsuI RGATCY 2 cut(s) 1364, 3163
PsyI GACNNNGTC 1 cut(s) 1652
PvuII CAGCTG 3 cut(s) 2617, 2929, 3271
RsaI GTAC 6 cut(s) 98, 584, 1062, 1565, 2151, 2389
RsaNI GTAC 6 cut(s) 97, 583, 1061, 1564, 2150, 2388
RseI CAYNNNNRTG 2 cut(s) 2712, 2819
SacI GAGCTC 1 cut(s) 1158
SapI GCTCTTC 1 cut(s) 141
SatI GCNGC 8 cut(s) 25, 323, 645, 692, 2615, 3144, 3266, 3269
Sau96I GGNCC 2 cut(s) 483, 2878
SchI GAGTC 3 cut(s) 539, 3105, 3278
ScrFI CCNGG 6 cut(s) 823, 1538, 1701, 2696, 2730, 3280
SduI GDGCHC 2 cut(s) 136, 1158
SexAI ACCWGGT 1 cut(s) 1536
SfaNI GCATC 9 cut(s) 352, 639, 873, 1181, 1250, 1413, 2586, 2672, 2770
SfcI CTRYAG 4 cut(s) 978, 2343, 2667, 2831
SfoI GGCGCC 1 cut(s) 859
SfuI TTCGAA 2 cut(s) 1453, 2905
SinI GGWCC 2 cut(s) 483, 2878
SmiMI CAYNNNNRTG 2 cut(s) 2712, 2819
SmlI CTYRAG 6 cut(s) 833, 1210, 1682, 1983, 2632, 3053
SmoI CTYRAG 6 cut(s) 833, 1210, 1682, 1983, 2632, 3053
SpeI ACTAGT 2 cut(s) 1336, 1856
SphI GCATGC 3 cut(s) 671, 959, 2281
SseBI AGGCCT 2 cut(s) 1893, 3051
SsiI CCGC 9 cut(s) 322, 353, 642, 645, 691, 826, 862, 1967, 2446
SspDI GGCGCC 1 cut(s) 857
SspI AATATT 1 cut(s) 406
SspMI CTAG 8 cut(s) 602, 1337, 1371, 1857, 2180, 2462, 2558, 3150
SstI GAGCTC 1 cut(s) 1158
StuI AGGCCT 2 cut(s) 1893, 3051
StyD4I CCNGG 6 cut(s) 821, 1536, 1699, 2694, 2728, 3278
StyI CCWWGG 3 cut(s) 34, 2003, 2599
TaiI ACGT 3 cut(s) 48, 336, 588
TaqI TCGA 7 cut(s) 15, 86, 387, 1453, 2785, 2905, 3109
TatI WGTACW 3 cut(s) 96, 1060, 2149
TauI GCSGC 3 cut(s) 325, 647, 694
TscAI CASTG 5 cut(s) 457, 474, 520, 814, 1425
TseFI GTSAC 3 cut(s) 452, 1942, 3244
TseI GCWGC 5 cut(s) 24, 2614, 3143, 3265, 3268
Tsp45I GTSAC 3 cut(s) 452, 1942, 3244
TspGWI ACGGA 3 cut(s) 1370, 1460, 2653
TspRI CASTG 5 cut(s) 457, 474, 520, 814, 1425
Tth111I GACNNNGTC 1 cut(s) 1652
Van91I CCANNNNNTGG 2 cut(s) 1543, 1831
Vha464I CTTAAG 3 cut(s) 833, 2632, 3053
VpaK11BI GGWCC 2 cut(s) 483, 2878
VspI ATTAAT 1 cut(s) 459
XagI CCTNNNNNAGG 1 cut(s) 2873
XapI RAATTY 6 cut(s) 803, 905, 2118, 2457, 2507, 2792
XbaI TCTAGA 2 cut(s) 2179, 2557
XceI RCATGY 7 cut(s) 385, 671, 959, 1334, 2274, 2281, 2773
XmnI GAANNNNTTC 3 cut(s) 383, 509, 2457
XspI CTAG 8 cut(s) 602, 1337, 1371, 1857, 2180, 2462, 2558, 3150
Zsp2I ATGCAT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.