Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Reverse (-)

65861960 .. 65862553

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG446000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTCTTGTTCTTATTTACTTCCTTTACATGGTCGCAAGTGATCGAATTTGCTTTCAGATTCTCCAAGAGAAAGTATAAGTTGATTAAAAGAGAATGGAGATTACTGGGTGCTCTATTAGAGGATTTCAATGAAGTTACAAGATCCGGGATTCAAATTACCCAGAAAGCCAGTACACTCTTGGATTCAGGACGTGTCCAAGCTGGATTAACTATACAACTGAATGATAAGGAAACCGGCTGGATAACGAATGCAAGAAAAGTGGTTACTTGTGTTCAAAGCTTTCGGAGATTGAGAAGGAGAAGACAATATCCAATGCTGTTTTTCTTCGTCTTGGTTGATCTGGTACCGATGATTGGTGTTGCCTTTGGGATGAAATGGCTCACTGATGTCCTGGGAGAGAAATTATGTGCCGACATCTGTAGATCACTGGAGCAGACAAGTTCCAAAGTTCGAAGTCTGCAGGACAGATCTTATGTTGATGAAGTTGAATGTATATCTGTCAATTCTGAGCCACCAACAGCCCAACTTGGCTTGAGAATTGATCCTGAGTTGATCATTTCCTCTGTCAGAAGTCAGAACCTCTGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

197

Amino Acids

22.75

Weight (kDa)

9.5

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	346
AclWI	GGATC	2 cut(s)	138, 539
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	2 cut(s)	175, 348
AfiI	CCNNNNNNNGG	2 cut(s)	30, 356
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	4 cut(s)	130, 155, 278, 491
AjiI	CACGTC	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	203, 282
AluI	AGCT	2 cut(s)	203, 282
Alw21I	GWGCWC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	138, 539
ApoI	RAATTY	1 cut(s)	47
Asp718I	GGTACC	1 cut(s)	346
AsuC2I	CCSGG	1 cut(s)	148
AsuII	TTCGAA	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	555
BcnI	CCSGG	1 cut(s)	148
BfmI	CTRYAG	2 cut(s)	421, 461
BglII	AGATCT	1 cut(s)	470
Bme1390I	CCNGG	2 cut(s)	148, 395
BmgBI	CACGTC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	148, 395
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 356
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	111, 171, 435
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	30, 356
BseMII	CTCAG	2 cut(s)	501, 540
BseNI	ACTGG	3 cut(s)	111, 171, 435
BshNI	GGYRCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	147, 237
BslI	CCNNNNNNNGG	2 cut(s)	30, 356
BsmI	GAATGC	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	7 cut(s)	42, 143, 340, 425, 470, 544, 555
BspCNI	CTCAG	2 cut(s)	502, 541
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	465
BspPI	GGATC	2 cut(s)	138, 539
BspT104I	TTCGAA	1 cut(s)	454
BspT107I	GGYRCC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	3 cut(s)	111, 171, 435
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	7 cut(s)	42, 143, 340, 425, 470, 544, 555
Bst2UI	CCWGG	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	510, 549
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	7 cut(s)	45, 146, 343, 428, 473, 547, 558
BstMBI	GATC	7 cut(s)	42, 143, 340, 425, 470, 544, 555
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	2 cut(s)	146, 393
BstSFI	CTRYAG	2 cut(s)	421, 461
BstV2I	GAAGAC	1 cut(s)	310
BstX2I	RGATCY	2 cut(s)	143, 470
BstYI	RGATCY	2 cut(s)	143, 470
BtrI	CACGTC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	384, 428, 589
Cfr10I	RCCGGY	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	174, 347
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	8 cut(s)	170, 203, 240, 282, 382, 514, 524, 534
CviKI_1	RGCY	8 cut(s)	170, 203, 240, 282, 382, 514, 524, 534
CviQI	GTAC	2 cut(s)	174, 347
DdeI	CTNAG	2 cut(s)	510, 549
DpnI	GATC	7 cut(s)	44, 145, 342, 427, 472, 546, 557
DpnII	GATC	7 cut(s)	42, 143, 340, 425, 470, 544, 555
EcoRII	CCWGG	1 cut(s)	393
FaeI	CATG	1 cut(s)	33
FaiI	YATR	6 cut(s)	31, 78, 215, 409, 477, 497
FatI	CATG	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	555
FokI	GGATG	1 cut(s)	385
GsuI	CTGGAG	1 cut(s)	452
HapII	CCGG	2 cut(s)	147, 237
Hin1II	CATG	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	3 cut(s)	60, 151, 185
HpaII	CCGG	2 cut(s)	147, 237
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	5 cut(s)	59, 288, 511, 572, 579
Hpy188III	TCNNGA	2 cut(s)	189, 548
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	254, 463
HpyF3I	CTNAG	2 cut(s)	510, 549
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	33
KpnI	GGTACC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	7 cut(s)	42, 143, 340, 425, 470, 544, 555
LmnI	GCTCC	1 cut(s)	433
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	3 cut(s)	136, 265, 587
MalI	GATC	7 cut(s)	44, 145, 342, 427, 472, 546, 557
MboI	GATC	7 cut(s)	42, 143, 340, 425, 470, 544, 555
MboII	GAAGA	2 cut(s)	315, 319
MflI	RGATCY	2 cut(s)	143, 470
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	5 cut(s)	47, 156, 404, 505, 540
MnlI	CCTC	3 cut(s)	115, 574, 593
MseI	TTAA	2 cut(s)	87, 209
MspI	CCGG	2 cut(s)	147, 237
MspR9I	CCNGG	2 cut(s)	148, 395
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	395
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	7 cut(s)	42, 143, 340, 425, 470, 544, 555
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	587
NspV	TTCGAA	1 cut(s)	454
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	60, 151, 185
PfoI	TCCNGGA	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	465
PsuI	RGATCY	2 cut(s)	143, 470
RsaI	GTAC	2 cut(s)	175, 348
RsaNI	GTAC	2 cut(s)	174, 347
SaqAI	TTAA	2 cut(s)	87, 209
Sau3AI	GATC	7 cut(s)	42, 143, 340, 425, 470, 544, 555
ScrFI	CCNGG	2 cut(s)	148, 395
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	4 cut(s)	196, 205, 284, 585
SfcI	CTRYAG	2 cut(s)	421, 461
SfuI	TTCGAA	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	5 cut(s)	47, 156, 404, 505, 540
StyD4I	CCNGG	2 cut(s)	146, 393
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	45, 454
TasI	AATT	5 cut(s)	47, 156, 404, 505, 540
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	60, 151, 185
Tru1I	TTAA	2 cut(s)	87, 209
Tru9I	TTAA	2 cut(s)	87, 209
TscAI	CASTG	2 cut(s)	391, 435
TseFI	GTSAC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	3 cut(s)	147, 389, 498
TspRI	CASTG	2 cut(s)	391, 435
XapI	RAATTY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.