Rmu_sc0004810.1_g000002

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004810.1
Physical Location & Seq
Reverse (-)
1748 .. 2302
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004810.1_g000002.1.cds

Sequence Viewer

Length: 555 bp
atggtgtcaactgacgagaattttttccctggggttctgaaattggaaagtttgtcaaaccttaggaatctgtccagtctatatctgtttggaaggcttcaaatcccatccatcatacatagtctcccagaaagcctcactcatcttaccttatcagcttccgggatagttgacgatccaatgccaaagttagggatgcttccaaacctgaaatcactttctttgaactctggttcttatcaaggaacagacatggtttgctccacagatcgctttcaggaacttgtggttcttaggctttggcacctggataatctgaaaacaattgatgtgcgaaaaggagcaatgccaaatcttagggagttagagattagatcctgcagcaagttcaaaatcacaagtgatggactgaaagatttaaagttcctccaagaaattaagttggggaatatgcccaatgatcgcacagctgatactgagaaagactttgcagaagctatggcgaagtcccgcggaaaggttcaccttcctgcaatcaaaatagactattggtag

Protein Analysis

184

Amino Acids

20.69

Weight (kDa)

7.77

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 303
AccII CGCG 1 cut(s) 513
AciI CCGC 2 cut(s) 511, 513
AclWI GGATC 2 cut(s) 170, 369
AcsI RAATTY 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 191, 517
AgsI TTSAA 3 cut(s) 101, 226, 391
AjnI CCWGG 2 cut(s) 28, 306
AluBI AGCT 3 cut(s) 158, 470, 497
AluI AGCT 3 cut(s) 158, 470, 497
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 2 cut(s) 170, 369
ApeKI GCWGC 1 cut(s) 381
ApoI RAATTY 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 515
AxyI CCTNAGG 1 cut(s) 62
BanI GGYRCC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 393
BccI CCATC 3 cut(s) 115, 119, 398
BciT130I CCWGG 2 cut(s) 30, 308
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 379
BisI GCNGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 383
Bme1390I CCNGG 3 cut(s) 30, 163, 308
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 3 cut(s) 30, 163, 308
BmsI GCATC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 28, 29, 511
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 517
Bse1I ACTGG 1 cut(s) 75
Bse21I CCTNAGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 2 cut(s) 30, 308
BseDI CCNNGG 3 cut(s) 28, 29, 511
BseGI GGATG 2 cut(s) 107, 201
BseLI CCNNNNNNNGG 2 cut(s) 191, 517
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 513
BshNI GGYRCC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 2 cut(s) 191, 517
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 493
Bsp143I GATC 4 cut(s) 175, 268, 374, 460
BspACI CCGC 2 cut(s) 511, 513
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 305
BspMAI CTGCAG 1 cut(s) 383
BspPI GGATC 2 cut(s) 170, 369
BspT107I GGYRCC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 3 cut(s) 28, 29, 511
BssMI GATC 4 cut(s) 175, 268, 374, 460
Bst2UI CCWGG 2 cut(s) 30, 308
BstDEI CTNAG 4 cut(s) 62, 293, 356, 477
BstDSI CCRYGG 1 cut(s) 511
BstF5I GGATG 2 cut(s) 107, 201
BstFNI CGCG 1 cut(s) 513
BstKTI GATC 4 cut(s) 178, 271, 377, 463
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 4 cut(s) 175, 268, 374, 460
BstNI CCWGG 2 cut(s) 30, 308
BstSCI CCNGG 3 cut(s) 28, 161, 306
BstSFI CTRYAG 1 cut(s) 379
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 2 cut(s) 107, 201
Cfr42I CCGCGG 1 cut(s) 514
CviAII CATG 1 cut(s) 253
CviJI RGCY 6 cut(s) 97, 135, 158, 298, 470, 497
CviKI_1 RGCY 6 cut(s) 97, 135, 158, 298, 470, 497
DdeI CTNAG 4 cut(s) 62, 293, 356, 477
DpnI GATC 4 cut(s) 177, 270, 376, 462
DpnII GATC 4 cut(s) 175, 268, 374, 460
DraI TTTAAA 1 cut(s) 420
Eco81I CCTNAGG 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 28, 306
FaeI CATG 1 cut(s) 256
FaiI YATR 6 cut(s) 82, 116, 120, 254, 452, 500
FaqI GGGAC 1 cut(s) 493
FatI CATG 1 cut(s) 252
FauI CCCGC 1 cut(s) 518
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 2 cut(s) 94, 208
Fsp4HI GCNGC 1 cut(s) 382
GluI GCNGC 1 cut(s) 382
HapII CCGG 1 cut(s) 162
Hin1II CATG 1 cut(s) 256
HincII GTYRAC 2 cut(s) 9, 172
HindII GTYRAC 2 cut(s) 9, 172
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 3 cut(s) 9, 172, 523
Hpy188I TCNGA 2 cut(s) 39, 318
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 3 cut(s) 9, 172, 523
HpyAV CCTTC 2 cut(s) 87, 536
HpyCH4V TGCA 3 cut(s) 381, 491, 533
HpyF3I CTNAG 4 cut(s) 62, 293, 356, 477
Hsp92II CATG 1 cut(s) 256
KspI CCGCGG 1 cut(s) 514
Kzo9I GATC 4 cut(s) 175, 268, 374, 460
LmnI GCTCC 2 cut(s) 266, 341
Lsp1109I GCAGC 1 cut(s) 393
LweI GCATC 1 cut(s) 186
MalI GATC 4 cut(s) 177, 270, 376, 462
MboI GATC 4 cut(s) 175, 268, 374, 460
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 374
MluCI AATT 4 cut(s) 19, 41, 324, 435
MnlI CCTC 2 cut(s) 146, 437
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 2 cut(s) 419, 438
MspA1I CMGCKG 2 cut(s) 470, 513
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 3 cut(s) 30, 163, 308
MunI CAATTG 1 cut(s) 324
MvaI CCWGG 2 cut(s) 30, 308
MvnI CGCG 1 cut(s) 513
NciI CCSGG 1 cut(s) 163
NdeII GATC 4 cut(s) 175, 268, 374, 460
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 305
PasI CCCWGGG 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 1 cut(s) 383
Psp6I CCWGG 2 cut(s) 28, 306
PspGI CCWGG 2 cut(s) 28, 306
PspN4I GGNNCC 1 cut(s) 305
PstI CTGCAG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 470
SacII CCGCGG 1 cut(s) 514
SaqAI TTAA 2 cut(s) 419, 438
SatI GCNGC 1 cut(s) 382
Sau3AI GATC 4 cut(s) 175, 268, 374, 460
ScrFI CCNGG 3 cut(s) 30, 163, 308
SetI ASST 9 cut(s) 63, 152, 160, 210, 309, 472, 499, 522, 528
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 379
Sfr303I CCGCGG 1 cut(s) 514
SgrBI CCGCGG 1 cut(s) 514
Sse9I AATT 4 cut(s) 19, 41, 324, 435
SsiI CCGC 2 cut(s) 511, 513
StyD4I CCNGG 3 cut(s) 28, 161, 306
TasI AATT 4 cut(s) 19, 41, 324, 435
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 419, 438
Tru9I TTAA 2 cut(s) 419, 438
TseI GCWGC 1 cut(s) 381
XapI RAATTY 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.