pycom09g10040

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
8113935 .. 8116648
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10040.1

Sequence Viewer

Length: 2610 bp
ATGAGCAACCGGCAGGCACGGATAAAGCTCGAGAGGGAAATAAGGTACACGGGCCGTCAGTTTGAAAAACTTTTAGAAAGGAAGGAGAGATATGGCTTCAAGTTTATAAGAAGAGATTCATCAAAGCTTGTGTATCTAACCCAAGTTCACACTACAGATGACACGGTTATTTCATCTGTTGTAAAACGGATGCAGCACTACATCAAAGAGGAGAGAGATATATTCGGTGAAGTATTGTATAAAGTCATATCGCTTTGTGAGGAATTGAAAAGCATCCAAAATCTTGTAGATGATGGAGGGATAACTGAACATAATTCCAGGATAGCTAGGTTGCAGCTAACGGAAGAAATTGCTCTAAGTTCTGAGAAATCAGTGATAGACTTTAAAAATAATCTGGGCACGGAATTGCGAACCAATCTAGTCAAAAAAACCGCCGCCACAAAACTTTCTGGTGAAGTTGATCAAATCACTCATAATATTCATCTTTCAAGGAGATGCATACAAGAATACGACATTGAATTAAGGGAAGAGTCAAGCTCAGTGGTTGGTTTAGAAGAAGACATATGTGCAGTGGTATCACTGCTGACAACCAACAATGAAGATCGTTCTGTTATTTCAGTTGTGGGGATTGGAGGAATAGGTAAGACAACATTGGCAAGGAAAATTTATCACCATGGAGTTGTTGTGGACCATTTTCCTCACCGTGCATGGGTTTCTGTACCTAGAAACTGCAATAGCAATGCACTTCTTGAAGACGCAGCGAAACAGGTCCTGAGTTCTCTCAAATTAGAAGAGAATGATAATGTTGAAGCATCCAGGATGACTAGGGTACGTGATGTCTTAAAAGAGAAAAGGTACCTTTTAGTTCTGGACAACATCTCCACAATGGAAGAGTGTGATACTCTGAAAAAGGCTTTTCCAGTAACAGCAAGTGGTAGTCGAATTCTGCTTACTACACGAGACAACACCGTGGCATCACAAGCAGACAGATACAACCCTCCACACCAACTTCAACTGCAAACCAAAGAAGAGAGCTGGCAGTTGTTTACCCAGGTGGTGCACTTTCCTCCAATCGACAGATTCCTCGCAAAAGAAATTTCAGAAAAATGTGGGGGTTTACCACAAGCGATCTTAGGTGTTGGATATTTAATGTCAAGAGAAAATGTGAATAGTACTGCTGAGGAGTTGAAAAGGGTGCTTGATTTCATAACACAGAACAATACACCATTGTTGCAAACCTTCACCATAAGGTCCATTAACTCGTTTCATAACAAAGATGATCGTCTGCTCGAGTGTCTTTCTTACTTCAAACTCTTCCCAAGGGACTTTGAAATTCCTGCAAGGAGATTAACCGCATTGTGGATTGCAGAAGGTCTGGTGGAAGTGAGTCAACACAAGGCAGAAACATATGAAGATGTTGCAGATAAGTACCTGTTGGATTTGATTGCTGGGGATATGGTTCAAGTAGTTGAAAGAAAGAATAATGGGGAAGTCAAGACGTGTCGCTTGCCCTATGCTCTACAAAGTAGACAAGAGCTGCAACATATGAGCCCAAAGAGACTTACTGATCATTATAGCAGAAGTGATGAGGTGTTTGCTCATATTCATGGTGACAGCTCAAATTTGTGGTTTCTTCCTCGGCTACAGGTCCTTGATCTCGAAAATGTATTCAGACCTGAATTGCCCACCAACATAGGAAAACTAAGCAGGTTGAGGTATCTGGGTTTGAGGTGGACTTTCCTTGATTCAGTCCCAACATCCATTGGCAATTTGCTGAACCTCCAGACATTAGATGTGAAGCATACAGATGTCCAGACTCTCCCTGGTTCGATATGGAAACTGCCCAAACTCCGACACCTATACTTAAACCAGCGTAAAATTATGCATCAGAAAGGCGGCAGTTCCCTGAAGAATCTCCGCACATTATGTGGTGCATTTGTGGATAAGAATAGTCCGTTGAAGGGTGGACTTGACAAGTTGATCAACCTAAGAAAATTGGGACTGGCATTCCAGTTAGACAGAACAGAGCAAAGGGCGTTAGGAGACAAGATTGTAAAGCTGCGGGGCCTTCGGTCTTTAAAATTGAGATCAATAGACGAAACAGAAGTAGTCTTGGGGCCATTGTCAGGCCTTGAGGATCTTTCAAGCCTAAATTTGTTTGGAAAGTTAACTCATTCCATTGTAGCGGAGTTCCCAAAAAACCTCACTGATCTTACCTTGTCAGCCTCTTTTCTGTCAGATGATCCAATGCCTAAGTTAGAGAAGCTTTTTCACCTTAAAGTACTCCGTTTTTACTCCAATTCATACACAGGTGAAAAAATGTCTTGCTCCACGTGGGGATTTCCGAAGCTTGTAGTTTTGAAGTTGTGGAAGCTACAACTACTAGAAGATTGGGACGTGCAGGAAAAGGCAATGAGAAATCTCAGGGAGTTGGAGATCAGATCCTGCATCAAATTGAGGGTCCCAAGCGGGTTGAAGCAATTGAAGAATCTCACTAAATTGAAGTTGACTGATATGCCACAAGAATTTTCTGCAACCATTACGAGAACTAGGGCTCAAATTTGGGATGACATTACCCACTCCCCAGCAATCATTACTGAAAGCTGGTAG

Protein Analysis

870

Amino Acids

99.56

Weight (kDa)

8.96

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 187 - 353 2.3e-35 NB-ARC domain
WHD_DRP PF23559 438 - 503 1.2e-12 Disease resistance protein Winged helix domain
LRR_14 PF23598 531 - 836 3.5e-36 Leucine-rich repeat region
LRR_8 PF13855 570 - 624 4.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 1698
Acc65I GGTACC 1 cut(s) 855
AccB1I GGYRCC 1 cut(s) 855
AccI GTMKAC 1 cut(s) 1528
AciI CCGC 8 cut(s) 432, 435, 1353, 1896, 1918, 2062, 2186, 2469
AclWI GGATC 3 cut(s) 2145, 2237, 2436
AcsI RAATTY 8 cut(s) 663, 942, 1095, 1332, 1621, 2152, 2525, 2559
AcuI CTGAAG 1 cut(s) 1928
AcvI CACGTG 1 cut(s) 2334
AfaI GTAC 7 cut(s) 47, 720, 831, 857, 1174, 1430, 2283
AfiI CCNNNNNNNGG 4 cut(s) 709, 1359, 1961, 2126
AflIII ACRYGT 1 cut(s) 1499
AjiI CACGTC 2 cut(s) 1500, 2398
AjnI CCWGG 4 cut(s) 317, 815, 1050, 1822
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 3 cut(s) 954, 1552, 2037
Alw44I GTGCAC 1 cut(s) 1058
AlwI GGATC 3 cut(s) 2145, 2237, 2436
AlwNI CAGNNNCTG 2 cut(s) 772, 2445
Ama87I CYCGRG 2 cut(s) 29, 1289
AoxI GGCC 4 cut(s) 52, 2065, 2117, 2128
ApaLI GTGCAC 1 cut(s) 1058
ApeKI GCWGC 5 cut(s) 193, 334, 758, 1537, 2059
ApoI RAATTY 8 cut(s) 663, 942, 1095, 1332, 1621, 2152, 2525, 2559
ArsI GACNNNNNNTTYG 2 cut(s) 2445, 2477
Asp700I GAANNNNTTC 1 cut(s) 115
Asp718I GGTACC 1 cut(s) 855
AspS9I GGNCC 8 cut(s) 52, 688, 769, 1251, 1648, 2065, 2117, 2461
AsuHPI GGTGA 8 cut(s) 239, 464, 662, 692, 1234, 1622, 2264, 2324
AvaI CYCGRG 2 cut(s) 29, 1289
AvaII GGWCC 5 cut(s) 688, 769, 1251, 1648, 2461
BaeGI GKGCMC 2 cut(s) 401, 1062
BanI GGYRCC 1 cut(s) 855
BanII GRGCYC 2 cut(s) 1553, 2557
BauI CACGAG 1 cut(s) 957
BbrPI CACGTG 1 cut(s) 2334
BbsI GAAGAC 2 cut(s) 564, 759
Bbv12I GWGCWC 1 cut(s) 1062
BbvCI CCTCAGC 1 cut(s) 1179
BbvI GCAGC 5 cut(s) 205, 346, 770, 1524, 2046
BccI CCATC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 4 cut(s) 319, 817, 1052, 1824
BclI TGATCA 3 cut(s) 460, 1567, 1980
BcoDI GTCTC 3 cut(s) 954, 1552, 2037
BfaI CTAG 6 cut(s) 327, 419, 723, 825, 2384, 2550
BfmI CTRYAG 2 cut(s) 153, 1643
BfuAI ACCTGC 1 cut(s) 1698
BisI GCNGC 7 cut(s) 194, 335, 435, 759, 1538, 1897, 2060
BlsI GCNGC 7 cut(s) 195, 336, 436, 760, 1539, 1898, 2061
BmcAI AGTACT 2 cut(s) 1174, 2283
Bme1390I CCNGG 4 cut(s) 319, 817, 1052, 1824
Bme18I GGWCC 5 cut(s) 688, 769, 1251, 1648, 2461
BmeT110I CYCGRG 2 cut(s) 29, 1289
BmgBI CACGTC 2 cut(s) 1500, 2398
BmgT120I GGNCC 8 cut(s) 52, 688, 769, 1251, 1648, 2065, 2117, 2461
BmiI GGNNCC 5 cut(s) 857, 2066, 2118, 2462, 2463
BmrFI CCNGG 4 cut(s) 319, 817, 1052, 1824
BmsI GCATC 7 cut(s) 180, 282, 485, 821, 983, 1894, 2457
BpiI GAAGAC 2 cut(s) 564, 759
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BpmI CTGGAG 1 cut(s) 1766
Bpu10I CCTNAGC 1 cut(s) 1179
BpuEI CTTGAG 1 cut(s) 2153
BsaAI YACGTR 2 cut(s) 833, 2334
BsaJI CCNNGG 6 cut(s) 673, 969, 1050, 1319, 1637, 1822
BsaXI ACNNNNNCTCC 4 cut(s) 669, 699, 863, 893
Bsc4I CCNNNNNNNGG 4 cut(s) 709, 1359, 1961, 2126
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 3 cut(s) 920, 2007, 2011
Bse3DI GCAATG 2 cut(s) 745, 2418
BseBI CCWGG 4 cut(s) 319, 817, 1052, 1824
BseDI CCNNGG 6 cut(s) 673, 969, 1050, 1319, 1637, 1822
BseGI GGATG 6 cut(s) 195, 273, 812, 825, 1757, 2572
BseLI CCNNNNNNNGG 4 cut(s) 709, 1359, 1961, 2126
BseMI GCAATG 2 cut(s) 745, 2418
BseMII CTCAG 5 cut(s) 354, 552, 764, 1170, 2437
BseNI ACTGG 3 cut(s) 920, 2007, 2011
BseRI GAGGAG 2 cut(s) 224, 1196
BseSI GKGCMC 2 cut(s) 401, 1062
BseXI GCAGC 5 cut(s) 205, 346, 770, 1524, 2046
BseYI CCCAGC 2 cut(s) 1448, 2584
BsgI GTGCAG 2 cut(s) 588, 2420
BshFI GGCC 4 cut(s) 54, 2067, 2119, 2130
BshNI GGYRCC 1 cut(s) 855
BsiHKAI GWGCWC 1 cut(s) 1062
BsiHKCI CYCGRG 2 cut(s) 29, 1289
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 5 cut(s) 1337, 1736, 2013, 2408, 2447
BslI CCNNNNNNNGG 4 cut(s) 709, 1359, 1961, 2126
BsmAI GTCTC 3 cut(s) 954, 1552, 2037
BsmFI GGGAC 5 cut(s) 1337, 1736, 2013, 2408, 2447
BsmI GAATGC 1 cut(s) 2006
BsnI GGCC 4 cut(s) 54, 2067, 2119, 2130
BsoBI CYCGRG 2 cut(s) 29, 1289
Bsp1286I GDGCHC 4 cut(s) 401, 1062, 1553, 2557
Bsp19I CCATGG 1 cut(s) 673
BspACI CCGC 8 cut(s) 432, 435, 1353, 1896, 1918, 2062, 2186, 2469
BspANI GGCC 4 cut(s) 54, 2067, 2119, 2130
BspCNI CTCAG 5 cut(s) 355, 551, 765, 1171, 2436
BspLI GGNNCC 5 cut(s) 857, 2066, 2118, 2462, 2463
BspMI ACCTGC 1 cut(s) 1698
BspPI GGATC 3 cut(s) 2145, 2237, 2436
BspT107I GGYRCC 1 cut(s) 855
BsrDI GCAATG 2 cut(s) 745, 2418
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 3 cut(s) 920, 2007, 2011
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 6 cut(s) 673, 969, 1050, 1319, 1637, 1822
BssSI CACGAG 1 cut(s) 957
BssT1I CCWWGG 2 cut(s) 673, 1319
Bst2BI CACGAG 1 cut(s) 957
Bst2UI CCWGG 4 cut(s) 319, 817, 1052, 1824
Bst4CI ACNGT 3 cut(s) 166, 704, 970
Bst6I CTCTTC 6 cut(s) 106, 522, 786, 885, 1023, 1319
BstBAI YACGTR 2 cut(s) 833, 2334
BstC8I GCNNGC 3 cut(s) 15, 1037, 1508
BstDSI CCRYGG 2 cut(s) 673, 969
BstF5I GGATG 6 cut(s) 195, 273, 812, 825, 1757, 2572
BstMAI GTCTC 3 cut(s) 954, 1552, 2037
BstMWI GCNNNNNNNGC 1 cut(s) 980
BstNI CCWGG 4 cut(s) 319, 817, 1052, 1824
BstSCI CCNGG 4 cut(s) 317, 815, 1050, 1822
BstSFI CTRYAG 2 cut(s) 153, 1643
BstSLI GKGCMC 2 cut(s) 401, 1062
BstV1I GCAGC 5 cut(s) 205, 346, 770, 1524, 2046
BstV2I GAAGAC 2 cut(s) 564, 759
BstX2I RGATCY 2 cut(s) 2137, 2441
BstYI RGATCY 2 cut(s) 2137, 2441
BsuRI GGCC 4 cut(s) 54, 2067, 2119, 2130
BtgI CCRYGG 2 cut(s) 673, 969
BtrI CACGTC 2 cut(s) 1500, 2398
BtsCI GGATG 6 cut(s) 195, 273, 812, 825, 1757, 2572
BtsI GCAGTG 2 cut(s) 576, 578
BtsIMutI CAGTG 5 cut(s) 378, 546, 576, 578, 2205
BveI ACCTGC 1 cut(s) 1698
Cac8I GCNNGC 3 cut(s) 15, 1037, 1508
CaiI CAGNNNCTG 2 cut(s) 772, 2445
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 8 cut(s) 52, 688, 769, 1251, 1648, 2065, 2117, 2461
CseI GACGC 1 cut(s) 764
Csp6I GTAC 7 cut(s) 46, 719, 830, 856, 1173, 1429, 2282
CspCI CAANNNNNGTGG 2 cut(s) 522, 557
CviAII CATG 3 cut(s) 674, 708, 1607
CviQI GTAC 7 cut(s) 46, 719, 830, 856, 1173, 1429, 2282
DraI TTTAAA 2 cut(s) 385, 2079
Eam1104I CTCTTC 6 cut(s) 106, 522, 786, 885, 1023, 1319
EarI CTCTTC 6 cut(s) 106, 522, 786, 885, 1023, 1319
Eco130I CCWWGG 2 cut(s) 673, 1319
Eco147I AGGCCT 1 cut(s) 2130
Eco24I GRGCYC 2 cut(s) 1553, 2557
Eco47I GGWCC 5 cut(s) 688, 769, 1251, 1648, 2461
Eco57I CTGAAG 1 cut(s) 1928
Eco72I CACGTG 1 cut(s) 2334
Eco88I CYCGRG 2 cut(s) 29, 1289
EcoO109I RGGNCCY 4 cut(s) 769, 1648, 2065, 2461
EcoRI GAATTC 1 cut(s) 942
EcoRII CCWGG 4 cut(s) 317, 815, 1050, 1822
EcoT14I CCWWGG 2 cut(s) 673, 1319
EcoT22I ATGCAT 2 cut(s) 500, 1887
EcoT38I GRGCYC 2 cut(s) 1553, 2557
ErhI CCWWGG 2 cut(s) 673, 1319
FaeI CATG 3 cut(s) 677, 711, 1610
FaqI GGGAC 5 cut(s) 1337, 1736, 2013, 2408, 2447
FatI CATG 3 cut(s) 673, 707, 1606
FauI CCCGC 2 cut(s) 2055, 2462
FauNDI CATATG 3 cut(s) 563, 1408, 1545
FbaI TGATCA 3 cut(s) 460, 1567, 1980
FblI GTMKAC 1 cut(s) 1528
Fnu4HI GCNGC 7 cut(s) 194, 335, 435, 759, 1538, 1897, 2060
FokI GGATG 6 cut(s) 202, 260, 799, 832, 1744, 2579
FriOI GRGCYC 2 cut(s) 1553, 2557
Fsp4HI GCNGC 7 cut(s) 194, 335, 435, 759, 1538, 1897, 2060
FspBI CTAG 6 cut(s) 327, 419, 723, 825, 2384, 2550
GluI GCNGC 7 cut(s) 194, 335, 435, 759, 1538, 1897, 2060
GsaI CCCAGC 2 cut(s) 1452, 2588
GsuI CTGGAG 1 cut(s) 1766
HaeIII GGCC 4 cut(s) 54, 2067, 2119, 2130
HapII CCGG 1 cut(s) 10
HgaI GACGC 1 cut(s) 764
Hin1II CATG 3 cut(s) 677, 711, 1610
HincII GTYRAC 3 cut(s) 1391, 2169, 2508
HindII GTYRAC 3 cut(s) 1391, 2169, 2508
HindIII AAGCTT 3 cut(s) 125, 2264, 2348
HinfI GANTC 8 cut(s) 116, 530, 1080, 1387, 1745, 1816, 1912, 2488
HpaI GTTAAC 1 cut(s) 2169
HpaII CCGG 1 cut(s) 10
HphI GGTGA 8 cut(s) 239, 464, 662, 692, 1234, 1622, 2264, 2324
Hpy188I TCNGA 9 cut(s) 364, 906, 1102, 1673, 1853, 1890, 2239, 2346, 2441
Hpy188III TCNNGA 9 cut(s) 31, 749, 772, 869, 1155, 1495, 1658, 1783, 1813
HpyAV CCTTC 5 cut(s) 76, 1249, 1364, 1954, 2078
HpyCH4III ACNGT 3 cut(s) 166, 704, 970
HpyCH4IV ACGT 4 cut(s) 832, 1499, 2333, 2397
HpyF10VI GCNNNNNNNGC 1 cut(s) 980
HpySE526I ACGT 4 cut(s) 832, 1499, 2333, 2397
Hsp92II CATG 3 cut(s) 677, 711, 1610
KflI GGGWCCC 1 cut(s) 2461
KpnI GGTACC 1 cut(s) 859
Ksp22I TGATCA 3 cut(s) 460, 1567, 1980
KspAI GTTAAC 1 cut(s) 2169
LmnI GCTCC 1 cut(s) 2333
Lsp1109I GCAGC 5 cut(s) 205, 346, 770, 1524, 2046
LweI GCATC 7 cut(s) 180, 282, 485, 821, 983, 1894, 2457
MaeI CTAG 6 cut(s) 327, 419, 723, 825, 2384, 2550
MaeII ACGT 4 cut(s) 832, 1499, 2333, 2397
MaeIII GTNAC 2 cut(s) 922, 1610
MfeI CAATTG 1 cut(s) 2480
MflI RGATCY 2 cut(s) 2137, 2441
MhlI GDGCHC 4 cut(s) 401, 1062, 1553, 2557
MlyI GAGTC 3 cut(s) 539, 1396, 1810
MmeI TCCRAC 4 cut(s) 1120, 1416, 1876, 2412
Mph1103I ATGCAT 2 cut(s) 500, 1887
MroXI GAANNNNTTC 1 cut(s) 115
MslI CAYNNNNRTG 2 cut(s) 1605, 1806
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 4 cut(s) 319, 817, 1052, 1824
MunI CAATTG 1 cut(s) 2480
Mva1269I GAATGC 1 cut(s) 2006
MvaI CCWGG 4 cut(s) 319, 817, 1052, 1824
MwoI GCNNNNNNNGC 1 cut(s) 980
NcoI CCATGG 1 cut(s) 673
NdeI CATATG 3 cut(s) 563, 1408, 1545
NlaIII CATG 3 cut(s) 677, 711, 1610
NlaIV GGNNCC 5 cut(s) 857, 2066, 2118, 2462, 2463
NmeAIII GCCGAG 1 cut(s) 1618
NmuCI GTSAC 1 cut(s) 1610
NsiI ATGCAT 2 cut(s) 500, 1887
PaeR7I CTCGAG 2 cut(s) 29, 1289
PceI AGGCCT 1 cut(s) 2130
PctI GAATGC 1 cut(s) 2006
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 5 cut(s) 116, 1080, 1745, 1912, 2488
PfoI TCCNGGA 2 cut(s) 317, 815
PkrI GCNGC 7 cut(s) 195, 336, 436, 760, 1539, 1898, 2061
PleI GAGTC 3 cut(s) 538, 1395, 1810
PmaCI CACGTG 1 cut(s) 2334
PmlI CACGTG 1 cut(s) 2334
PpsI GAGTC 3 cut(s) 538, 1395, 1810
Ppu21I YACGTR 2 cut(s) 833, 2334
PpuMI RGGWCCY 3 cut(s) 769, 1648, 2461
PsiI TTATAA 1 cut(s) 107
Psp5II RGGWCCY 3 cut(s) 769, 1648, 2461
Psp6I CCWGG 4 cut(s) 317, 815, 1050, 1822
PspCI CACGTG 1 cut(s) 2334
PspFI CCCAGC 2 cut(s) 1448, 2584
PspGI CCWGG 4 cut(s) 317, 815, 1050, 1822
PspN4I GGNNCC 5 cut(s) 857, 2066, 2118, 2462, 2463
PspPI GGNCC 8 cut(s) 52, 688, 769, 1251, 1648, 2065, 2117, 2461
PspPPI RGGWCCY 3 cut(s) 769, 1648, 2461
PspXI VCTCGAGB 1 cut(s) 1289
PstNI CAGNNNCTG 2 cut(s) 772, 2445
PsuI RGATCY 2 cut(s) 2137, 2441
RsaI GTAC 7 cut(s) 47, 720, 831, 857, 1174, 1430, 2283
RsaNI GTAC 7 cut(s) 46, 719, 830, 856, 1173, 1429, 2282
RseI CAYNNNNRTG 2 cut(s) 1605, 1806
SatI GCNGC 7 cut(s) 194, 335, 435, 759, 1538, 1897, 2060
Sau96I GGNCC 8 cut(s) 52, 688, 769, 1251, 1648, 2065, 2117, 2461
ScaI AGTACT 2 cut(s) 1174, 2283
SchI GAGTC 3 cut(s) 539, 1396, 1810
ScrFI CCNGG 4 cut(s) 319, 817, 1052, 1824
SduI GDGCHC 4 cut(s) 401, 1062, 1553, 2557
SfaNI GCATC 7 cut(s) 180, 282, 485, 821, 983, 1894, 2457
SfcI CTRYAG 2 cut(s) 153, 1643
Sfr274I CTCGAG 2 cut(s) 29, 1289
SinI GGWCC 5 cut(s) 688, 769, 1251, 1648, 2461
SlaI CTCGAG 2 cut(s) 29, 1289
SmiMI CAYNNNNRTG 2 cut(s) 1605, 1806
SmlI CTYRAG 3 cut(s) 29, 1289, 2132
SmoI CTYRAG 3 cut(s) 29, 1289, 2132
SseBI AGGCCT 1 cut(s) 2130
SsiI CCGC 8 cut(s) 432, 435, 1353, 1896, 1918, 2062, 2186, 2469
SspI AATATT 1 cut(s) 478
SspMI CTAG 6 cut(s) 327, 419, 723, 825, 2384, 2550
StuI AGGCCT 1 cut(s) 2130
StyD4I CCNGG 4 cut(s) 317, 815, 1050, 1822
StyI CCWWGG 2 cut(s) 673, 1319
TaaI ACNGT 3 cut(s) 166, 704, 970
TaiI ACGT 4 cut(s) 835, 1502, 2336, 2400
TaqI TCGA 6 cut(s) 30, 940, 1074, 1290, 1659, 1829
TaqII GACCGA 1 cut(s) 2061
TatI WGTACW 2 cut(s) 1172, 2281
TauI GCSGC 2 cut(s) 437, 1899
TfiI GAWTC 5 cut(s) 116, 1080, 1745, 1912, 2488
TscAI CASTG 5 cut(s) 378, 546, 576, 585, 2212
TseFI GTSAC 1 cut(s) 1610
TseI GCWGC 5 cut(s) 193, 334, 758, 1537, 2059
Tsp45I GTSAC 1 cut(s) 1610
TspDTI ATGAA 9 cut(s) 108, 162, 470, 612, 1195, 1256, 1425, 1595, 2292
TspGWI ACGGA 6 cut(s) 34, 202, 356, 416, 1944, 2276
TspRI CASTG 5 cut(s) 378, 546, 576, 585, 2212
VneI GTGCAC 1 cut(s) 1058
VpaK11BI GGWCC 5 cut(s) 688, 769, 1251, 1648, 2461
XapI RAATTY 8 cut(s) 663, 942, 1095, 1332, 1621, 2152, 2525, 2559
XcmI CCANNNNNNNNNTGG 1 cut(s) 1820
XhoI CTCGAG 2 cut(s) 29, 1289
XmiI GTMKAC 1 cut(s) 1528
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 6 cut(s) 327, 419, 723, 825, 2384, 2550
ZrmI AGTACT 2 cut(s) 1174, 2283
Zsp2I ATGCAT 2 cut(s) 500, 1887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.