Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Forward (+)

50258389 .. 50259172

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0392300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACCTCTTCAAAAGGAACACACATAACCACACCAGAACCAATATAGCAATAAAATTTCTTATAAGCCACCAAAGCCATGAGCCTTCTCAATCACCTCCCTACTGTCTGTACATCCTATGGAGGAGTACCCTCTACTTTGCTGCATCAACCGTTAATGCAGCTACATTCAATATCCAAAACAACTGTCCCTTCACTGTTTGGGCTGCCGCTGTGCCAGGCGGCGGCACACCGCTTGGCAGCGGCCAAGTATGGTCTATCAACGTAAATGCCGGAACTACAGGGGCCCGCATTTGGGCCAGAACAAATTGCAACTTTGATGGAGCCGGACGTGGAAGATGTCAGACTGGTGACTGTGGCGGTCTCCTCCAATGTCAAGGCTATGGTCAACCCCCAAACACCCTCGCCGAATATTCACTAAACCACATGAACATGGATTTTTTTGATATCTCTCTGGTTGATGGGTTCAATGTCCCAATGGACTTTAGTCCCACCTCCAATGGCTGCACTAAAGATATCAGATGCACAGCGGATATAAACGGACAGTGCCCCGCGCAGTTGAAGGCTCTGGGTGGATGTAACAATCCTTGCACTGTGTTCAAAACTAATATGTATTGTTGTAATTCTGGAAATTGTGGTCCTACCAACTACTCTAGATTTTTTAAAAGTCGCTGCCCGAATGCTCGTAGTTACCCTAACGATGATCAAACCAGCACTTGCCCTGGTGGCACTAACTATAGGGTTGTGTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

252

Amino Acids

27.46

Weight (kDa)

8.44

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	61 - 252	4.4e-57	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
AccII	CGCG	1 cut(s)	554
AciI	CCGC	9 cut(s)	210, 222, 225, 233, 243, 289, 360, 530, 552
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	2 cut(s)	113, 130
AfiI	CCNNNNNNNGG	3 cut(s)	224, 294, 295
AgsI	TTSAA	5 cut(s)	13, 172, 469, 562, 601
AjiI	CACGTC	1 cut(s)	332
AjnI	CCWGG	2 cut(s)	217, 721
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	368
AoxI	GGCC	3 cut(s)	244, 285, 297
ApaI	GGGCCC	1 cut(s)	289
ApeKI	GCWGC	6 cut(s)	143, 161, 206, 240, 504, 672
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	5 cut(s)	4, 285, 286, 297, 638
AsuHPI	GGTGA	2 cut(s)	87, 362
AvaII	GGWCC	2 cut(s)	4, 638
BaeGI	GKGCMC	2 cut(s)	289, 551
BanII	GRGCYC	1 cut(s)	289
BbvI	GCAGC	6 cut(s)	130, 173, 193, 252, 491, 659
BccI	CCATC	2 cut(s)	314, 455
BciT130I	CCWGG	2 cut(s)	219, 723
BclI	TGATCA	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	2 cut(s)	279, 736
BglI	GCCNNNNNGGC	1 cut(s)	726
Bme1390I	CCNGG	2 cut(s)	219, 723
Bme18I	GGWCC	2 cut(s)	4, 638
BmgBI	CACGTC	1 cut(s)	332
BmgT120I	GGNCC	5 cut(s)	4, 285, 286, 297, 638
BmiI	GGNNCC	3 cut(s)	286, 287, 325
BmrFI	CCNGG	2 cut(s)	219, 723
BmsI	GCATC	2 cut(s)	155, 512
BoxI	GACNNNNGTC	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 294, 295
Bse1I	ACTGG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	219, 723
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	2 cut(s)	114, 581
BseLI	CCNNNNNNNGG	3 cut(s)	224, 294, 295
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	139, 356
BseSI	GKGCMC	2 cut(s)	289, 551
BseXI	GCAGC	6 cut(s)	130, 173, 193, 252, 491, 659
BsgI	GTGCAG	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	3 cut(s)	246, 287, 299
BsiSI	CCGG	2 cut(s)	273, 327
BslFI	GGGAC	3 cut(s)	174, 458, 474
BslI	CCNNNNNNNGG	3 cut(s)	224, 294, 295
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	3 cut(s)	174, 458, 474
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	3 cut(s)	246, 287, 299
Bso31I	GGTCTC	1 cut(s)	368
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	289, 551
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	703
BspACI	CCGC	9 cut(s)	210, 222, 225, 233, 243, 289, 360, 530, 552
BspANI	GGCC	3 cut(s)	246, 287, 299
BspFNI	CGCG	1 cut(s)	554
BspLI	GGNNCC	3 cut(s)	286, 287, 325
BspTNI	GGTCTC	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	1 cut(s)	703
Bst2UI	CCWGG	2 cut(s)	219, 723
Bst4CI	ACNGT	7 cut(s)	107, 154, 188, 199, 356, 546, 595
Bst6I	CTCTTC	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	114, 581
BstFNI	CGCG	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	1 cut(s)	706
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	703
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 726
BstNI	CCWGG	2 cut(s)	219, 723
BstPAI	GACNNNNGTC	1 cut(s)	486
BstSCI	CCNGG	2 cut(s)	217, 721
BstSFI	CTRYAG	2 cut(s)	279, 736
BstSLI	GKGCMC	2 cut(s)	289, 551
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	6 cut(s)	130, 173, 193, 252, 491, 659
BsuRI	GGCC	3 cut(s)	246, 287, 299
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	114, 581
BtsIMutI	CAGTG	3 cut(s)	195, 551, 591
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	5 cut(s)	4, 285, 286, 297, 638
Csp6I	GTAC	2 cut(s)	112, 129
CviAII	CATG	4 cut(s)	80, 427, 433, 756
CviQI	GTAC	2 cut(s)	112, 129
DpnI	GATC	1 cut(s)	705
DpnII	GATC	1 cut(s)	703
DraI	TTTAAA	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	2 cut(s)	448, 517
Eco47I	GGWCC	2 cut(s)	4, 638
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	217, 721
EcoRV	GATATC	2 cut(s)	448, 517
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	4 cut(s)	83, 430, 436, 759
FaqI	GGGAC	3 cut(s)	174, 458, 474
FatI	CATG	4 cut(s)	79, 426, 432, 755
FauI	CCCGC	2 cut(s)	296, 559
FbaI	TGATCA	1 cut(s)	703
FokI	GGATG	2 cut(s)	101, 588
FriOI	GRGCYC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	555
HaeIII	GGCC	3 cut(s)	246, 287, 299
HapII	CCGG	2 cut(s)	273, 327
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	4 cut(s)	83, 430, 436, 759
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	273, 327
HphI	GGTGA	2 cut(s)	87, 362
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	2 cut(s)	345, 521
Hpy188III	TCNNGA	2 cut(s)	627, 654
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	96, 202, 556
HpyCH4III	ACNGT	7 cut(s)	107, 154, 188, 199, 356, 546, 595
HpyCH4IV	ACGT	2 cut(s)	264, 331
HpyCH4V	TGCA	6 cut(s)	146, 161, 312, 507, 525, 591
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 726
HpySE526I	ACGT	2 cut(s)	264, 331
Hsp92II	CATG	4 cut(s)	83, 430, 436, 759
HspAI	GCGC	1 cut(s)	554
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	1 cut(s)	703
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	6 cut(s)	130, 173, 193, 252, 491, 659
LweI	GCATC	2 cut(s)	155, 512
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	264, 331
MaeIII	GTNAC	3 cut(s)	350, 578, 689
MalI	GATC	1 cut(s)	705
MboI	GATC	1 cut(s)	703
MboII	GAAGA	1 cut(s)	348
MhlI	GDGCHC	2 cut(s)	289, 551
MluCI	AATT	4 cut(s)	56, 307, 622, 631
MnlI	CCTC	7 cut(s)	17, 108, 117, 143, 377, 413, 505
MseI	TTAA	2 cut(s)	156, 663
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	3 cut(s)	212, 243, 530
MspI	CCGG	2 cut(s)	273, 327
MspR9I	CCNGG	2 cut(s)	219, 723
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	2 cut(s)	219, 723
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	2 cut(s)	75, 726
NdeII	GATC	1 cut(s)	703
NlaIII	CATG	4 cut(s)	83, 430, 436, 759
NlaIV	GGNNCC	3 cut(s)	286, 287, 325
NmuCI	GTSAC	1 cut(s)	350
PctI	GAATGC	1 cut(s)	685
PshAI	GACNNNNGTC	1 cut(s)	486
PsiI	TTATAA	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	217, 721
PspGI	CCWGG	2 cut(s)	217, 721
PspN4I	GGNNCC	3 cut(s)	286, 287, 325
PspOMI	GGGCCC	1 cut(s)	285
PspPI	GGNCC	5 cut(s)	4, 285, 286, 297, 638
RsaI	GTAC	2 cut(s)	113, 130
RsaNI	GTAC	2 cut(s)	112, 129
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	156, 663
Sau3AI	GATC	1 cut(s)	703
Sau96I	GGNCC	5 cut(s)	4, 285, 286, 297, 638
ScrFI	CCNGG	2 cut(s)	219, 723
SduI	GDGCHC	2 cut(s)	289, 551
SetI	ASST	6 cut(s)	9, 100, 166, 267, 334, 497
SfaNI	GCATC	2 cut(s)	155, 512
SfcI	CTRYAG	2 cut(s)	279, 736
SinI	GGWCC	2 cut(s)	4, 638
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	4 cut(s)	56, 307, 622, 631
SsiI	CCGC	9 cut(s)	210, 222, 225, 233, 243, 289, 360, 530, 552
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	217, 721
TaaI	ACNGT	7 cut(s)	107, 154, 188, 199, 356, 546, 595
TaiI	ACGT	2 cut(s)	267, 334
TasI	AATT	4 cut(s)	56, 307, 622, 631
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	4 cut(s)	212, 225, 228, 246
Tru1I	TTAA	2 cut(s)	156, 663
Tru9I	TTAA	2 cut(s)	156, 663
TscAI	CASTG	3 cut(s)	202, 551, 598
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	6 cut(s)	143, 161, 206, 240, 504, 672
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	3 cut(s)	202, 551, 598
VpaK11BI	GGWCC	2 cut(s)	4, 638
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	653
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.