Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Forward (+)

22471666 .. 22472547

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCCATTGCAATTATCATCGATTTTATCTATGGTCTTGTTCTTATTTACTTACTTTACATGGTCGCAAGTGAATTTGCTTTCAGATTCTCCAAGAGAAAGTATAAGTTGATTAAAAGAGAATGGAGATTACTGGGTGCTCTATTAGAGGATTTTGATGAAGTTACAAGATCTGGGATTCAAATTACCCAGAAAGCCAGTACACTCTTGGATTCAGGACCTGTCCAAGCTGGATTAACTATACAACTGAATGATAAGGAAATCGGCTGGATAACGAATGCAAGAAAAGTGGTTACTTGTGTTCAAAGCTTTCAGAGATTGAGAAAGAGAAGACAATATCCAATGCTGTTTTTCTTCGTCTTGGTTGATCTGGTACAGATGATTGGTGTTGCCTTTGGGATGCAATGGCTCACTGATGTCCTGGGAGAGATATTATGTGCCGACATCTGTAGATCACTGGAGCAGACAAGTTCCAAAGTTCGAAGTCTGCAGGACAGATCTTATGTTGATGAACTTGAATGTATATCTGTCAATTCTGAGCCACCAACAGCCCAACTTGGCTTGAGAATTGGTCCTGAGTTGATCATTTCCTCTGTCAGAACCTCTGTCACTGAAAAACCAGAAGTTAAATCCTTCATAATGCATTTGCAGCTACCGCAGGCTTTCATGAAAGATTCGCGAAGGCTCAAAGTACTGGAAAGTAAGAGGGAGGAGTCCTGGGTGATAGCAGCAAACAAGACCCTTGAAAAGGCAAAGGGTGCCATTAAAATCATTAAAAAAGCAGCAGCAAATCAACGAAGAAGTTGGCTTTCAGATGGCAGAAATTGGAGGGCTGGGAGGAAGCTTAAGGGGCACATAATGTACTTTGACATATGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

293

Amino Acids

33.72

Weight (kDa)

9.75

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AccII	CGCG	1 cut(s)	679
AciI	CCGC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	4 cut(s)	202, 375, 693, 863
AfiI	CCNNNNNNNGG	1 cut(s)	748
AflII	CTTAAG	1 cut(s)	845
AgsI	TTSAA	4 cut(s)	182, 305, 518, 746
AjnI	CCWGG	2 cut(s)	420, 716
AluBI	AGCT	4 cut(s)	230, 309, 652, 844
AluI	AGCT	4 cut(s)	230, 309, 652, 844
Alw21I	GWGCWC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	649, 728, 782, 785
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	218, 572
AsuHPI	GGTGA	1 cut(s)	733
AsuII	TTCGAA	1 cut(s)	481
AvaII	GGWCC	2 cut(s)	218, 572
BaeGI	GKGCMC	1 cut(s)	855
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	758
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	4 cut(s)	661, 740, 794, 797
BccI	CCATC	1 cut(s)	809
BciT130I	CCWGG	2 cut(s)	422, 718
BclI	TGATCA	1 cut(s)	582
BfmI	CTRYAG	2 cut(s)	448, 488
BfrI	CTTAAG	1 cut(s)	845
BglII	AGATCT	2 cut(s)	170, 497
BisI	GCNGC	4 cut(s)	650, 729, 783, 786
BlsI	GCNGC	4 cut(s)	651, 730, 784, 787
BmcAI	AGTACT	1 cut(s)	693
Bme1390I	CCNGG	2 cut(s)	422, 718
Bme18I	GGWCC	2 cut(s)	218, 572
BmgT120I	GGNCC	2 cut(s)	218, 572
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	2 cut(s)	422, 718
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	479
Bpu14I	TTCGAA	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	583
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	421, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	748
Bse1I	ACTGG	4 cut(s)	138, 198, 462, 699
Bse3DI	GCAATG	2 cut(s)	6, 410
BseBI	CCWGG	2 cut(s)	422, 718
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	421, 717
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	748
BseMI	GCAATG	2 cut(s)	6, 410
BseMII	CTCAG	2 cut(s)	528, 567
BseNI	ACTGG	4 cut(s)	138, 198, 462, 699
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	855
BseXI	GCAGC	4 cut(s)	661, 740, 794, 797
BseYI	CCCAGC	1 cut(s)	833
Bsh1236I	CGCG	1 cut(s)	679
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	758
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	748
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	142, 855
Bsp143I	GATC	5 cut(s)	170, 367, 452, 497, 582
Bsp68I	TCGCGA	1 cut(s)	679
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	529, 568
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	679
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	845
BsrDI	GCAATG	2 cut(s)	6, 410
BsrI	ACTGG	4 cut(s)	138, 198, 462, 699
BssECI	CCNNGG	2 cut(s)	421, 717
BssMI	GATC	5 cut(s)	170, 367, 452, 497, 582
Bst2UI	CCWGG	2 cut(s)	422, 718
BstAFI	CTTAAG	1 cut(s)	845
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstBI	TTCGAA	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	2 cut(s)	537, 576
BstENI	CCTNNNNNAGG	1 cut(s)	746
BstF5I	GGATG	1 cut(s)	405
BstFNI	CGCG	1 cut(s)	679
BstKTI	GATC	5 cut(s)	173, 370, 455, 500, 585
BstMBI	GATC	5 cut(s)	170, 367, 452, 497, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	649, 655, 758, 850
BstNI	CCWGG	2 cut(s)	422, 718
BstSCI	CCNGG	2 cut(s)	420, 716
BstSFI	CTRYAG	2 cut(s)	448, 488
BstSLI	GKGCMC	1 cut(s)	855
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	4 cut(s)	661, 740, 794, 797
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	170, 497
BstYI	RGATCY	2 cut(s)	170, 497
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	411, 455, 609
BtuMI	TCGCGA	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	660
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	666
Cfr13I	GGNCC	2 cut(s)	218, 572
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	4 cut(s)	201, 374, 692, 862
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	2 cut(s)	61, 667
CviQI	GTAC	4 cut(s)	201, 374, 692, 862
DdeI	CTNAG	2 cut(s)	537, 576
DpnI	GATC	5 cut(s)	172, 369, 454, 499, 584
DpnII	GATC	5 cut(s)	170, 367, 452, 497, 582
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	218, 572
EcoNI	CCTNNNNNAGG	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	420, 716
EcoT22I	ATGCAT	1 cut(s)	645
FaeI	CATG	2 cut(s)	64, 670
FatI	CATG	2 cut(s)	60, 666
FauNDI	CATATG	1 cut(s)	872
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	4 cut(s)	650, 729, 783, 786
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	4 cut(s)	650, 729, 783, 786
GluI	GCNGC	4 cut(s)	650, 729, 783, 786
GsaI	CCCAGC	1 cut(s)	837
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	64, 670
HindIII	AAGCTT	2 cut(s)	307, 842
HinfI	GANTC	5 cut(s)	87, 178, 212, 674, 713
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	5 cut(s)	86, 315, 538, 599, 814
Hpy188III	TCNNGA	4 cut(s)	216, 575, 667, 678
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	643, 675
HpyCH4V	TGCA	6 cut(s)	11, 281, 403, 490, 643, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	649, 655, 758, 850
HpyF3I	CTNAG	2 cut(s)	537, 576
Hsp92II	CATG	2 cut(s)	64, 670
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	5 cut(s)	170, 367, 452, 497, 582
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	4 cut(s)	661, 740, 794, 797
LweI	GCATC	1 cut(s)	390
MaeIII	GTNAC	3 cut(s)	163, 292, 607
MalI	GATC	5 cut(s)	172, 369, 454, 499, 584
MboI	GATC	5 cut(s)	170, 367, 452, 497, 582
MboII	GAAGA	3 cut(s)	342, 346, 810
MflI	RGATCY	2 cut(s)	170, 497
MhlI	GDGCHC	2 cut(s)	142, 855
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	12, 74, 183, 532, 567, 823
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	722
MnlI	CCTC	7 cut(s)	142, 601, 613, 699, 703, 822, 831
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	114, 236, 627, 765, 774, 846, 880
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	845
MspR9I	CCNGG	2 cut(s)	422, 718
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	2 cut(s)	422, 718
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	4 cut(s)	649, 655, 758, 850
NdeI	CATATG	1 cut(s)	872
NdeII	GATC	5 cut(s)	170, 367, 452, 497, 582
NlaIII	CATG	2 cut(s)	64, 670
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	1 cut(s)	607
NruI	TCGCGA	1 cut(s)	679
NsiI	ATGCAT	1 cut(s)	645
NspV	TTCGAA	1 cut(s)	481
PagI	TCATGA	1 cut(s)	666
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	4 cut(s)	87, 178, 212, 674
PkrI	GCNGC	4 cut(s)	651, 730, 784, 787
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	420, 716
PspFI	CCCAGC	1 cut(s)	833
PspGI	CCWGG	2 cut(s)	420, 716
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	2 cut(s)	218, 572
PspPPI	RGGWCCY	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	492
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	2 cut(s)	170, 497
RruI	TCGCGA	1 cut(s)	679
RsaI	GTAC	4 cut(s)	202, 375, 693, 863
RsaNI	GTAC	4 cut(s)	201, 374, 692, 862
SaqAI	TTAA	7 cut(s)	114, 236, 627, 765, 774, 846, 880
SatI	GCNGC	4 cut(s)	650, 729, 783, 786
Sau3AI	GATC	5 cut(s)	170, 367, 452, 497, 582
Sau96I	GGNCC	2 cut(s)	218, 572
ScaI	AGTACT	1 cut(s)	693
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	2 cut(s)	422, 718
SduI	GDGCHC	2 cut(s)	142, 855
SetI	ASST	6 cut(s)	223, 232, 311, 605, 654, 846
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	2 cut(s)	448, 488
SfuI	TTCGAA	1 cut(s)	481
SinI	GGWCC	2 cut(s)	218, 572
SmlI	CTYRAG	2 cut(s)	562, 845
SmoI	CTYRAG	2 cut(s)	562, 845
Sse9I	AATT	6 cut(s)	12, 74, 183, 532, 567, 823
SsiI	CCGC	1 cut(s)	656
StyD4I	CCNGG	2 cut(s)	420, 716
TaqI	TCGA	2 cut(s)	21, 481
TasI	AATT	6 cut(s)	12, 74, 183, 532, 567, 823
TatI	WGTACW	3 cut(s)	200, 691, 861
TfiI	GAWTC	4 cut(s)	87, 178, 212, 674
Tru1I	TTAA	7 cut(s)	114, 236, 627, 765, 774, 846, 880
Tru9I	TTAA	7 cut(s)	114, 236, 627, 765, 774, 846, 880
TscAI	CASTG	3 cut(s)	418, 462, 616
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	4 cut(s)	649, 728, 782, 785
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	5 cut(s)	174, 525, 625, 655, 683
TspRI	CASTG	3 cut(s)	418, 462, 616
Vha464I	CTTAAG	1 cut(s)	845
VpaK11BI	GGWCC	2 cut(s)	218, 572
XagI	CCTNNNNNAGG	1 cut(s)	746
XapI	RAATTY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
ZrmI	AGTACT	1 cut(s)	693
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.