Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014329.1

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1481

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014329.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 958 bp

atggccattgcaattatcatcgatttgatctatggtcttgttcttatttacttcctttacatggtcgcaagtgaatttgctttcagattctccaagagaaagtataagttgattaaaagagaatggagattactgggtgctctattagaggattgcaatgaagttacaagatctgggattcaaattacccagaaagccagtacactcttggattcaggacctgtccaagctggattaactatacaactgaatgataaggaaaccggttggataacgaatgcaagaaaagtgatcactggagcagacgagttccaaagttcgaagtctgcaggacaatcttatgctgatgaacttgaatgtacatctgtcaattctgagccaccaacagcccaaattggcttgagaattgatcctgagttgatcattaatttcctctgtcactgtgatgaacttgaatgtacatctgtcaattctgagccaccaacagcccaaattggcttgagaattgatcctgagttgatcatttcctctgtcactgaaaaaccagaagttaaatccttcataatgcatttgcagctactgcaggctttcatgaaagatttgcgaaggctcaaagtactggaaagtaagagggaggagtcctgggtgatagcagcaaacaagacccttgaaaaggcaaaggcaggatctctggcctgctggaaaaaaagatatggttttaaatttgtcaaacgagactcatcattgaaatataatgtacaccatgcttctcaacggaaaagcaatcaatatcagatcacagatgataaggatctctctgatttaaacaacattcggaactggctcattcaactgccaaaaacaagcaataaggtgggatctcatgtcagctcattgagcaaggagctggagcacatgcctaagctgttggaagatacaaaagcaactgaagaaaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

319

Amino Acids

36.17

Weight (kDa)

8.1

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	404, 503, 694, 819, 886
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	74, 722
AfaI	GTAC	5 cut(s)	202, 361, 460, 618, 759
AfiI	CCNNNNNNNGG	2 cut(s)	61, 673
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	6 cut(s)	182, 356, 455, 671, 748, 851
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	5 cut(s)	230, 577, 891, 907, 925
AluI	AGCT	5 cut(s)	230, 577, 891, 907, 925
Alw21I	GWGCWC	2 cut(s)	142, 915
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	5 cut(s)	404, 503, 694, 819, 886
AlwNI	CAGNNNCTG	2 cut(s)	221, 580
AoxI	GGCC	2 cut(s)	3, 693
ApeKI	GCWGC	2 cut(s)	574, 653
ApoI	RAATTY	2 cut(s)	74, 722
AseI	ATTAAT	1 cut(s)	426
AsiGI	ACCGGT	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	658
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	142, 915
BbvI	GCAGC	2 cut(s)	586, 665
BciT130I	CCWGG	1 cut(s)	643
BclI	TGATCA	3 cut(s)	291, 420, 519
BcoDI	GTCTC	1 cut(s)	729
BfmI	CTRYAG	2 cut(s)	327, 581
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	2 cut(s)	575, 654
BlsI	GCNGC	2 cut(s)	576, 655
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	1 cut(s)	643
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	643
BmrI	ACTGGG	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	143
BpmI	CTGGAG	2 cut(s)	318, 929
Bpu10I	CCTNAGC	1 cut(s)	921
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	421, 520
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	810
BsaJI	CCNNGG	1 cut(s)	642
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 673
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	5 cut(s)	138, 198, 301, 624, 845
Bse3DI	GCAATG	2 cut(s)	6, 163
Bse8I	GATNNNNATC	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	643
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	642
BseJI	GATNNNNATC	1 cut(s)	810
BseLI	CCNNNNNNNGG	2 cut(s)	61, 673
BseMI	GCAATG	2 cut(s)	6, 163
BseMII	CTCAG	4 cut(s)	366, 405, 465, 504
BseNI	ACTGG	5 cut(s)	138, 198, 301, 624, 845
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	586, 665
BshFI	GGCC	2 cut(s)	5, 695
BshTI	ACCGGT	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	142, 915
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	61, 673
BsmAI	GTCTC	1 cut(s)	729
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	5, 695
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	142, 915
Bsp1407I	TGTACA	3 cut(s)	359, 458, 757
BspANI	GGCC	2 cut(s)	5, 695
BspCNI	CTCAG	4 cut(s)	367, 406, 466, 505
BspDI	ATCGAT	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	591
BspMAI	CTGCAG	2 cut(s)	331, 585
BspPI	GGATC	5 cut(s)	404, 503, 694, 819, 886
BspT104I	TTCGAA	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	6, 163
BsrFI	RCCGGY	1 cut(s)	263
BsrGI	TGTACA	3 cut(s)	359, 458, 757
BsrI	ACTGG	5 cut(s)	138, 198, 301, 624, 845
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	1 cut(s)	443
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstAUI	TGTACA	3 cut(s)	359, 458, 757
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	585, 697
BstDEI	CTNAG	5 cut(s)	375, 414, 474, 513, 921
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstMAI	GTCTC	1 cut(s)	729
BstMWI	GCNNNNNNNGC	3 cut(s)	574, 580, 897
BstNI	CCWGG	1 cut(s)	643
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	1 cut(s)	641
BstSFI	CTRYAG	2 cut(s)	327, 581
BstV1I	GCAGC	2 cut(s)	586, 665
BstX2I	RGATCY	4 cut(s)	170, 686, 811, 878
BstYI	RGATCY	4 cut(s)	170, 686, 811, 878
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	5, 695
BsuTUI	ATCGAT	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	294, 439, 534
Cac8I	GCNNGC	2 cut(s)	585, 697
CaiI	CAGNNNCTG	2 cut(s)	221, 580
CciI	TCATGA	1 cut(s)	591
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	218
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	5 cut(s)	201, 360, 459, 617, 758
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	5 cut(s)	61, 592, 764, 884, 916
CviQI	GTAC	5 cut(s)	201, 360, 459, 617, 758
DdeI	CTNAG	5 cut(s)	375, 414, 474, 513, 921
DraI	TTTAAA	2 cut(s)	721, 825
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	641
EcoT22I	ATGCAT	1 cut(s)	570
FaeI	CATG	5 cut(s)	64, 595, 767, 887, 919
FatI	CATG	5 cut(s)	60, 591, 763, 883, 915
FbaI	TGATCA	3 cut(s)	291, 420, 519
Fnu4HI	GCNGC	2 cut(s)	575, 654
Fsp4HI	GCNGC	2 cut(s)	575, 654
GluI	GCNGC	2 cut(s)	575, 654
GsuI	CTGGAG	2 cut(s)	318, 929
HaeIII	GGCC	2 cut(s)	5, 695
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	5 cut(s)	64, 595, 767, 887, 919
HinfI	GANTC	5 cut(s)	87, 178, 212, 638, 737
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	2 cut(s)	203, 760
Hpy188I	TCNGA	6 cut(s)	86, 376, 475, 795, 820, 837
Hpy188III	TCNNGA	4 cut(s)	216, 413, 512, 592
Hpy8I	GTNNAC	2 cut(s)	203, 760
HpyAV	CCTTC	2 cut(s)	568, 600
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	7 cut(s)	11, 156, 281, 329, 568, 574, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	574, 580, 897
HpyF3I	CTNAG	5 cut(s)	375, 414, 474, 513, 921
Hsp92II	CATG	5 cut(s)	64, 595, 767, 887, 919
Ksp22I	TGATCA	3 cut(s)	291, 420, 519
LmnI	GCTCC	3 cut(s)	299, 904, 910
Lsp1109I	GCAGC	2 cut(s)	586, 665
MaeIII	GTNAC	3 cut(s)	163, 437, 532
MboII	GAAGA	1 cut(s)	944
MflI	RGATCY	4 cut(s)	170, 686, 811, 878
MhlI	GDGCHC	2 cut(s)	142, 915
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	647, 731
MmeI	TCCRAC	2 cut(s)	248, 909
MnlI	CCTC	5 cut(s)	142, 443, 538, 624, 628
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	114, 236, 426, 552, 720, 824
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	643
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	643
MwoI	GCNNNNNNNGC	3 cut(s)	574, 580, 897
NlaIII	CATG	5 cut(s)	64, 595, 767, 887, 919
NmuCI	GTSAC	2 cut(s)	437, 532
NsiI	ATGCAT	1 cut(s)	570
NspI	RCATGY	1 cut(s)	919
NspV	TTCGAA	1 cut(s)	320
PagI	TCATGA	1 cut(s)	591
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	87, 178, 212
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	576, 655
PleI	GAGTC	2 cut(s)	646, 731
PpsI	GAGTC	2 cut(s)	646, 731
PpuMI	RGGWCCY	1 cut(s)	218
PshBI	ATTAAT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	641
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
PstI	CTGCAG	2 cut(s)	331, 585
PstNI	CAGNNNCTG	2 cut(s)	221, 580
PsuI	RGATCY	4 cut(s)	170, 686, 811, 878
RsaI	GTAC	5 cut(s)	202, 361, 460, 618, 759
RsaNI	GTAC	5 cut(s)	201, 360, 459, 617, 758
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	6 cut(s)	114, 236, 426, 552, 720, 824
SatI	GCNGC	2 cut(s)	575, 654
Sau96I	GGNCC	1 cut(s)	218
ScaI	AGTACT	1 cut(s)	618
SchI	GAGTC	2 cut(s)	647, 731
ScrFI	CCNGG	1 cut(s)	643
SduI	GDGCHC	2 cut(s)	142, 915
SetI	ASST	7 cut(s)	223, 232, 579, 876, 893, 909, 927
SfcI	CTRYAG	2 cut(s)	327, 581
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	2 cut(s)	400, 499
SmoI	CTYRAG	2 cut(s)	400, 499
StyD4I	CCNGG	1 cut(s)	641
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	2 cut(s)	21, 320
TatI	WGTACW	5 cut(s)	200, 359, 458, 616, 757
TfiI	GAWTC	3 cut(s)	87, 178, 212
Tru1I	TTAA	6 cut(s)	114, 236, 426, 552, 720, 824
Tru9I	TTAA	6 cut(s)	114, 236, 426, 552, 720, 824
TscAI	CASTG	3 cut(s)	301, 446, 541
TseFI	GTSAC	2 cut(s)	437, 532
TseI	GCWGC	2 cut(s)	574, 653
Tsp45I	GTSAC	2 cut(s)	437, 532
TspDTI	ATGAA	6 cut(s)	174, 363, 462, 550, 580, 608
TspGWI	ACGGA	1 cut(s)	790
TspRI	CASTG	3 cut(s)	301, 446, 541
VpaK11BI	GGWCC	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	671
XapI	RAATTY	2 cut(s)	74, 722
XceI	RCATGY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
ZrmI	AGTACT	1 cut(s)	618
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.