Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Reverse (-)

64757649 .. 64758422

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG457400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAATACGCCAAATGTTTTGCAGAATGGCAAGTATCCCCAATCCATTCTTTTCTTTGATACTCGAGAAGGAAATAAACCAGGAGAGGAAATAGGCTACTTTCTTTGCAAGGGCATTGCTGGTAGTTTCTTTCAGCAGTTGCTGGTTCTTGACTTGGAGCGTGTATTCAGACCTCAATTACTGACCACCATAGGTAAATTAAAGAAGCTGAAATATCTAGGCTTCAGGTGGACATACCTAGAGGAAATGCCATCATCTATAGGCAATTTGGTGGAACTCCAAACTCTAGAATTGAAGCATACTAGTACTACAACTATCTCAACTTCAATTTGGAAACTGAAGAACCTTCTGCACCTGTACTCGAATGAGAATTGTCGAATCAAATTTAGGTCTCTAACAACTGCCATTTCCATGAGGGAACTGAAGACACTATCAGGTTTATTTCTAGATAAGGGGAATCTTGTGAAGGATCGACTAAACAAGTTAACCAACCTTCAAAAGTTGGGATTGACATTCCAGCTGACGCAGCCAGAGCAAAAGGTCATAGCAAGATGGAGTGTGCAGCTGAATGACTTGGAGTCTTTGAAGTTGGCATCTATTAATGAGAAGAGTGTACCTCAACTTATGAGATTGAAACCTCTTTTATGCCTTAAAAAACTGTCCACCCTATACTTGTTGGAAAGCTTGAAAACCCATCCATTGAACTCCCTGAAAGTCTTATTCATTTTACCTTATCAGCCTCTGGAATTGTTAATGATCCAATGCCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

257

Amino Acids

29.57

Weight (kDa)

9.66

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	42 - 222	7e-22	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	477, 751
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	3 cut(s)	208, 359, 443
AfaI	GTAC	3 cut(s)	307, 359, 615
AgsI	TTSAA	7 cut(s)	295, 327, 497, 586, 634, 688, 703
AhdI	GACNNNNNGTC	1 cut(s)	577
AhlI	ACTAGT	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	4 cut(s)	208, 520, 565, 684
AluI	AGCT	4 cut(s)	208, 520, 565, 684
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	477, 751
AlwNI	CAGNNNCTG	2 cut(s)	142, 742
Ama87I	CYCGRG	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	526, 562
ApoI	RAATTY	1 cut(s)	383
AseI	ATTAAT	1 cut(s)	600
AvaI	CYCGRG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	2 cut(s)	538, 574
BccI	CCATC	3 cut(s)	259, 546, 702
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	396
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	5 cut(s)	218, 239, 287, 303, 446
BfmI	CTRYAG	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	45
BisI	GCNGC	2 cut(s)	527, 563
BlsI	GCNGC	2 cut(s)	528, 564
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	81
BmeRI	GACNNNNNGTC	1 cut(s)	577
BmeT110I	CYCGRG	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	431
BplI	GAGNNNNNCTC	2 cut(s)	601, 633
BsaI	GGTCTC	1 cut(s)	396
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	694
BseMI	GCAATG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	538, 574
BsgI	GTGCAG	2 cut(s)	335, 581
BsiHKCI	CYCGRG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	396
Bso31I	GGTCTC	1 cut(s)	396
BsoBI	CYCGRG	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	469, 756
BspPI	GGATC	2 cut(s)	477, 751
BspTNI	GGTCTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	114
BssMI	GATC	2 cut(s)	469, 756
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	660
Bst6I	CTCTTC	1 cut(s)	602
BstF5I	GGATG	1 cut(s)	694
BstKTI	GATC	2 cut(s)	472, 759
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	469, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 532
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	538, 574
BstV2I	GAAGAC	1 cut(s)	431
BsuI	GTATCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	694
CaiI	CAGNNNCTG	2 cut(s)	142, 742
CseI	GACGC	1 cut(s)	532
Csp6I	GTAC	3 cut(s)	306, 358, 614
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	8 cut(s)	96, 208, 222, 520, 529, 565, 684, 739
CviKI_1	RGCY	8 cut(s)	96, 208, 222, 520, 529, 565, 684, 739
CviQI	GTAC	3 cut(s)	306, 358, 614
DpnI	GATC	2 cut(s)	471, 758
DpnII	GATC	2 cut(s)	469, 756
DriI	GACNNNNNGTC	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	602
Eam1105I	GACNNNNNGTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	602
Eco31I	GGTCTC	1 cut(s)	396
Eco57I	CTGAAG	3 cut(s)	208, 359, 443
Eco88I	CYCGRG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	415
FaiI	YATR	9 cut(s)	191, 235, 260, 300, 413, 545, 626, 646, 670
FatI	CATG	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	527, 563
FokI	GGATG	1 cut(s)	681
Fsp4HI	GCNGC	2 cut(s)	527, 563
FspBI	CTAG	5 cut(s)	218, 239, 287, 303, 446
GluI	GCNGC	2 cut(s)	527, 563
HgaI	GACGC	1 cut(s)	532
Hin1II	CATG	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	3 cut(s)	378, 457, 578
HpaI	GTTAAC	1 cut(s)	486
Hpy166II	GTNNAC	4 cut(s)	231, 486, 614, 663
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	5 cut(s)	65, 149, 287, 446, 743
Hpy8I	GTNNAC	4 cut(s)	231, 486, 614, 663
HpyAV	CCTTC	4 cut(s)	62, 356, 460, 503
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4V	TGCA	4 cut(s)	22, 108, 352, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 532
Hsp92II	CATG	1 cut(s)	415
KspAI	GTTAAC	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	469, 756
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	2 cut(s)	538, 574
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	5 cut(s)	218, 239, 287, 303, 446
MalI	GATC	2 cut(s)	471, 758
MboI	GATC	2 cut(s)	469, 756
MboII	GAAGA	3 cut(s)	352, 436, 619
MluCI	AATT	8 cut(s)	176, 197, 265, 290, 327, 370, 383, 746
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	657
MnlI	CCTC	7 cut(s)	79, 183, 235, 408, 627, 648, 750
MseI	TTAA	5 cut(s)	200, 485, 600, 651, 752
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	520, 565
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	526, 532
NdeII	GATC	2 cut(s)	469, 756
NlaIII	CATG	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	378, 457
PkrI	GCNGC	2 cut(s)	528, 564
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PshBI	ATTAAT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PstNI	CAGNNNCTG	2 cut(s)	142, 742
PvuII	CAGCTG	2 cut(s)	520, 565
RsaI	GTAC	3 cut(s)	307, 359, 615
RsaNI	GTAC	3 cut(s)	306, 358, 614
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	5 cut(s)	200, 485, 600, 651, 752
SatI	GCNGC	2 cut(s)	527, 563
Sau3AI	GATC	2 cut(s)	469, 756
ScaI	AGTACT	1 cut(s)	307
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	63
SlaI	CTCGAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	8 cut(s)	176, 197, 265, 290, 327, 370, 383, 746
SspMI	CTAG	5 cut(s)	218, 239, 287, 303, 446
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	660
TaqI	TCGA	4 cut(s)	64, 362, 376, 472
TasI	AATT	8 cut(s)	176, 197, 265, 290, 327, 370, 383, 746
TatI	WGTACW	2 cut(s)	305, 357
TfiI	GAWTC	2 cut(s)	378, 457
Tru1I	TTAA	5 cut(s)	200, 485, 600, 651, 752
Tru9I	TTAA	5 cut(s)	200, 485, 600, 651, 752
TseI	GCWGC	2 cut(s)	526, 562
TspDTI	ATGAA	2 cut(s)	17, 712
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	1 cut(s)	383
XbaI	TCTAGA	2 cut(s)	286, 445
XhoI	CTCGAG	1 cut(s)	63
XspI	CTAG	5 cut(s)	218, 239, 287, 303, 446
ZrmI	AGTACT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.