Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Forward (+)

2938879 .. 2943030

Gene Structure 4152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G041000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3522 bp

ATGGCCGTTGCATCCATCGCCTGTTGGATCCTGTTTGCAATTTACGTGGTTGCAATTGCTGCATCTGAAATTACTTTCAGACACTTGAACGCCAAGTACAAGTGGATTAGAAGAGAATCCAGATTATTAACTGCTCTTCTTGAAGATTTTGACAATGTTTCGCGATCGCGGAACAAAATAATACAGAAAGCCAATCATCAGCTTTTGGATCCCCAACTCATCCAAGCTGGGATGACTGCACGAGTTCTGAATGAATGGGAGGAAGGCTGGATGAACAAAGCAAGAGAAGTAGCCTCCGAGGCAACTCGGTGTGTTCGAATACTGGGAAACAGAAGAACCTCTCCCAAGTGGTTTGTTTTGATCTCAACTGATCTGGTACCGATGCTTCAGCTGGCCCTTCGGATGAAGGGCCTCAATCATTTCCTTGGGAAGAAGAAACTCGACGTTGACCCCAGGATAAACCCACTCAATAGTCTCCTCTGGAAGAAGAAAATAAGTGCCAGCGACATCTGCAGATCACTGGAGCAGTCCAGGTCATGGGTTAGTAGCCTGCAGAACAGATCTGTGGTTGGTGAGATATTGGAGCAGTCCACGCCCTGGACCGGGCCACCTGTTAGCTTAAGAGCTGAGGAATTGATCTCCTCTATAAAGAACCTGATCGCTGAAAACCCGGAATTCATCAACTCCAGTACTACAATGCATTTAGAGCTGCTGCATGCTTTCATGAAAGATTTGCAACCGCTCAGACTGGAAACTGAAATGGAGAAGTCCTGGGTGGTGGAAGCAAACGAGACCATCGACGAAGCAAACGAGGCCATTCACACCATAAACATTACAGCAGCAGATCAGAGAAGTTGGTGGCTTTCAGTTGTGTGTAACCGGAGGGATAGGCGGAAGCTTAAGGAGGTCATCCTCCGCGTCGGCACCTGGATCTCTGACCTCCTGGAAACAAAGGAAAGATATGGTTTTAAATTTGTCAGACGACAATCCTCAAAATTATCTGCCAACAGGTTTCCTCAACAGCGAAGCTTCAAGTATCAGACTGCAGATGATATGGATGCGGTGAACAACATTCGTAACTGGCTGAATCAACTGGCAAAAACAAGCGATGAATTAGTATCTCACGTCAGCGCACTGAGCGAGGAGTTGGAGCAGATGCATACATTTCTCAAACATACAAAAGCAACTGAAGATTATGCTATTAATTTAAGAAATGCTTGCTTGGAGCAATTGAAGAAACTGGTTCCTGAAGCAGATCAGCAGTCCTCAAACGTCCCCAATAATGAAGGTTCAGGGTCCAAGCTTCTCTCAAAAATTACCCGGATCAATTACACTGTGAATGTTCTTCAAAGATGCGTACAAGCGTATTCCATTGAGGCAAGACAGGAGCTATGCTCAGTTGTTGGTTTGGAGGAAGACATACATGAACTGGTCAAGAGACTGGCTGATAATGGTGAACAGCGTCGTCCTATCATTTCCATTGTGGGGATGAAGGGTGTTGGTAAGACCACTCTGGCGAAGAAAGTTTATTACCATAGTACTATGGCAAACCATTTTGAAATCCGTCGTTGGGTGACCCTGACTGATGCTGATCAAGATTCTGATGTAAATGCACTTTTGGCAAGTGTTGGAAGCCAGGTCTTGGAGACCCAAGAGAAAGGGGATGGAAAAGAACACTGGATCAATAAATTGCATGGTTTCTTGGAGCCAAAGCGATACCTTGTAATTCTGGATGGAGTCTTGTCAATCCAAACCATGCATGCTCTCAAAGCAGCATTCCCAAAAGTGGCAAACGGGAGCAGAATTTTGCTCACCACGCGGAAAAAGGCCATTGCTTCAGCTGCTGACCAAAATAGCATTCCCCACCAGCTTCGTCTGCGAACCAAAGAAGAGAGCTGGGAGCTCTTTACCCAGATGGTGCATTGTCCTCCGGAACTTGAAGCTCTCGGCAAGAAAGTTGTAGGAAGAGGTGGAGGCTTACCACTTGTCATCTTACGCATTGGGTATCCACTGTCCGGGAAGAAAGTGACATCTGAGGAATTAGAGGTGCTAGAGGGCATCACTCAGCAGGAACAGAACCAGAAACCATGGTTAGAGAACCTGGAAGTGAATAAAGAGGATTTGCAATCACACCAAATTCTTGGTAAATGTTTTTCGTACTTCCAACTCTTTTCTGGGAATTTTGAAATCCCTGCGAGGAGAATAGTCACTTCATGGGTTGCACAAGGACTGGCACAAGTAAGCGGAGGTGGGAAAACATTACATACTCTTGAAAATGTTGTATATGAGTATCTATTGGAGTTGATTGGTCGTAATGTGATTCAAGTAGTTCAAAAAAATCTTGATGGGAAGGTGAAGACATGTTGCTTGCCTACTGCTCTGCGAGATCTCATGTTGCAAGGGGAAGGCAATAGCAGCAAAGCTACCAGTTTAAGCGGCCAACTTGCCTTTCATTTCGATGATAAGGATGCCCGTTTCCATAGTGGTGTCAACGCAAATTCCCCAATGGTTATGCAAAATGAAAGCCAACAACATTCCATTCTCCTCTTTGATAGTCAAGAAGGAAATAAGCCCCGGGAGGAAATAGGCGAGTTTCTTCAGAGTGGCATTATTGGTGGTTTCTTTGGACAGCTACAGGTTCTTGACCTTGAACGTGTATGCATGCCTGAAATTCCTAAGGCCATTGGAAAATTAAGGCAGTTAGCATATCTGGGGTTAAGGTGGACATACCTATCGGCGATCCCAGAATCGATAGGCAATTTGGTTAACCTCCTAACACTAGATTTGAAGCATACTTATGTTCGAATTCTCCCTAGTTCAGTTCGGAAATTGAAGAAACTTCGGCATCTCTACTTGAATCAGAATATTCAAATGTCTGCACCAACTTCCCTTCCCTTGAGCAATTTGCAGACATTATCAGGTGTATTTGTAGGTATGGACAAGCTTGTGAAAGACCGGCGGGACAAGTTGATCAACCTTCGAAAACTGGGGTTGACAATCCAGTTGGCACAACCAGAGCAAAAGGTATTGGCAAAATGGATTATGCAGCTGACCAAATTGCAGTCTTTGAAGTTGGCATCGCTTAATGAGAAGAGTGCACCTCAGCTTCTGAAATTAAAACCTCTGTCAAAACTTGAGAAACTCTCCAGCCTATATTTGTTGGGAAGGCTTGAAAACCCTGCATCCATCATAGGTGAACTCCCAGCAAGTCTCACTCGTCTTACCTTATCGGCCTCCGGGATCCAAGAAGACCCGATGCCAATGTTAGGGAAGCTTCCAAACCTTAAATCGCTGAATTTGAAATCTGGTTCGTATGAAGGACCAAACATGGTTTGCTCCATGGATACCTTTCCCCTGCTTTTGGTTCTGAAGCTTCGGAATCTAGATACTCTGAAAAAATTGGATGTGCAAGAAGGAGCAATGCGAAACCTTAGGGAGTTAGAGATTAAATCCTGCAGGAACTTTACAATCACTACTGGATTGACACACTTAAAGATCCTCCAGACATATGAAGTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

1174

Amino Acids

132.53

Weight (kDa)

9.28

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	376
AccB1I	GGYRCC	2 cut(s)	376, 923
AccB7I	CCANNNNNTGG	3 cut(s)	537, 597, 1642
AccBSI	CCGCTC	1 cut(s)	742
AccII	CGCG	4 cut(s)	163, 169, 918, 1819
AccIII	TCCGGA	1 cut(s)	1930
AciI	CCGC	9 cut(s)	169, 740, 892, 916, 1061, 1819, 2244, 2436, 2959
AcoI	YGGCCR	2 cut(s)	3, 2437
AcsI	RAATTY	9 cut(s)	674, 971, 1803, 2136, 2179, 2497, 2670, 2805, 3295
AcuI	CTGAAG	6 cut(s)	371, 1209, 1269, 1821, 2582, 3389
AfaI	GTAC	6 cut(s)	98, 378, 691, 1359, 1540, 2159
AflII	CTTAAG	2 cut(s)	619, 899
AflIII	ACRYGT	2 cut(s)	2360, 2653
AjiI	CACGTC	1 cut(s)	1126
AjnI	CCWGG	8 cut(s)	452, 530, 596, 770, 926, 942, 1635, 2100
AjuI	GAANNNNNNNTTGG	4 cut(s)	1842, 1874, 2433, 2465
Alw21I	GWGCWC	2 cut(s)	1905, 3100
Alw26I	GTCTC	5 cut(s)	479, 785, 1432, 1640, 3215
Alw44I	GTGCAC	1 cut(s)	3096
AlwNI	CAGNNNCTG	2 cut(s)	1844, 3109
Ama87I	CYCGRG	1 cut(s)	2574
Aor13HI	TCCGGA	1 cut(s)	1930
AoxI	GGCC	9 cut(s)	3, 393, 409, 605, 813, 1827, 2437, 2679, 3231
ApaLI	GTGCAC	1 cut(s)	3096
ApeKI	GCWGC	8 cut(s)	59, 709, 712, 839, 1772, 1841, 2415, 3046
ApoI	RAATTY	9 cut(s)	674, 971, 1803, 2136, 2179, 2497, 2670, 2805, 3295
AseI	ATTAAT	1 cut(s)	1203
AsiSI	GCGATCGC	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	1133
AspS9I	GGNCC	6 cut(s)	394, 409, 600, 605, 1296, 3320
AsuC2I	CCSGG	7 cut(s)	604, 671, 1321, 2017, 2575, 2576, 3238
AsuHPI	GGTGA	7 cut(s)	584, 1075, 1466, 1585, 1804, 2365, 3206
AsuII	TTCGAA	3 cut(s)	316, 2803, 2980
AvaI	CYCGRG	1 cut(s)	2574
AvaII	GGWCC	3 cut(s)	600, 1296, 3320
AxyI	CCTNAGG	2 cut(s)	2676, 3431
BaeGI	GKGCMC	1 cut(s)	3100
BamHI	GGATCC	3 cut(s)	27, 208, 3240
BanI	GGYRCC	2 cut(s)	376, 923
BanII	GRGCYC	1 cut(s)	1905
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BauI	CACGAG	1 cut(s)	240
BbsI	GAAGAC	3 cut(s)	1422, 2363, 3255
Bbv12I	GWGCWC	2 cut(s)	1905, 3100
BbvCI	CCTCAGC	2 cut(s)	627, 3102
BbvI	GCAGC	8 cut(s)	46, 696, 699, 851, 1784, 1828, 2427, 3058
BccI	CCATC	7 cut(s)	23, 803, 1658, 1727, 1909, 2339, 3194
BciT130I	CCWGG	8 cut(s)	454, 532, 598, 772, 928, 944, 1637, 2102
BciVI	GTATCC	2 cut(s)	2016, 3337
BclI	TGATCA	2 cut(s)	1591, 2970
BcnI	CCSGG	7 cut(s)	604, 671, 1321, 2017, 2575, 2576, 3238
BcoDI	GTCTC	5 cut(s)	479, 785, 1432, 1640, 3215
BfaI	CTAG	4 cut(s)	2051, 2780, 2814, 3383
BfmI	CTRYAG	5 cut(s)	511, 551, 1044, 2633, 3454
BfrI	CTTAAG	2 cut(s)	619, 899
BfuI	GTATCC	2 cut(s)	2016, 3337
BglI	GCCNNNNNGGC	1 cut(s)	299
BglII	AGATCT	2 cut(s)	560, 2386
BisI	GCNGC	9 cut(s)	60, 710, 713, 840, 1773, 1842, 2416, 2437, 3047
BlsI	GCNGC	9 cut(s)	61, 711, 714, 841, 1774, 1843, 2417, 2438, 3048
BmcAI	AGTACT	2 cut(s)	691, 1540
Bme18I	GGWCC	3 cut(s)	600, 1296, 3320
BmeT110I	CYCGRG	1 cut(s)	2574
BmgBI	CACGTC	1 cut(s)	1126
BmgT120I	GGNCC	6 cut(s)	394, 409, 600, 605, 1296, 3320
BmiI	GGNNCC	8 cut(s)	29, 210, 378, 925, 1245, 1297, 1707, 3242
BmrI	ACTGGG	2 cut(s)	332, 2996
BmuI	ACTGGG	2 cut(s)	332, 2996
BpiI	GAAGAC	3 cut(s)	1422, 2363, 3255
BplI	GAGNNNNNCTC	6 cut(s)	1379, 1411, 3085, 3117, 3128, 3160
BpmI	CTGGAG	4 cut(s)	542, 670, 3130, 3485
Bpu10I	CCTNAGC	2 cut(s)	627, 3102
Bpu14I	TTCGAA	3 cut(s)	316, 2803, 2980
BpuEI	CTTGAG	2 cut(s)	2917, 3155
BpuMI	CCSGG	7 cut(s)	604, 671, 1321, 2017, 2575, 2576, 3238
Bsa29I	ATCGAT	1 cut(s)	2750
BsaAI	YACGTR	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	1590
BsaI	GGTCTC	2 cut(s)	785, 1640
BsaJI	CCNNGG	9 cut(s)	297, 424, 452, 596, 771, 2087, 2573, 2574, 3339
BsaWI	WCCGGW	2 cut(s)	879, 1930
Bse118I	RCCGGY	1 cut(s)	2955
Bse21I	CCTNAGG	2 cut(s)	2676, 3431
Bse3DI	GCAATG	2 cut(s)	1830, 3426
Bse8I	GATNNNNATC	1 cut(s)	1590
BseAI	TCCGGA	1 cut(s)	1930
BseBI	CCWGG	8 cut(s)	454, 532, 598, 772, 928, 944, 1637, 2102
BseCI	ATCGAT	1 cut(s)	2750
BseDI	CCNNGG	9 cut(s)	297, 424, 452, 596, 771, 2087, 2573, 2574, 3339
BseJI	GATNNNNATC	1 cut(s)	1590
BseMI	GCAATG	2 cut(s)	1830, 3426
BseMII	CTCAG	7 cut(s)	618, 757, 1127, 1410, 2025, 2078, 3116
BseRI	GAGGAG	5 cut(s)	467, 631, 1157, 2212, 2534
BseSI	GKGCMC	1 cut(s)	3100
BseXI	GCAGC	8 cut(s)	46, 696, 699, 851, 1784, 1828, 2427, 3058
BseYI	CCCAGC	3 cut(s)	227, 1896, 3202
BsgI	GTGCAG	2 cut(s)	222, 2862
Bsh1236I	CGCG	4 cut(s)	163, 169, 918, 1819
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	9 cut(s)	5, 395, 411, 607, 815, 1829, 2439, 2681, 3233
BshNI	GGYRCC	2 cut(s)	376, 923
BshVI	ATCGAT	1 cut(s)	2750
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	1905, 3100
BsiHKCI	CYCGRG	1 cut(s)	2574
BsiSI	CCGG	9 cut(s)	603, 671, 880, 1321, 1931, 2016, 2575, 2956, 3237
BslFI	GGGAC	2 cut(s)	1259, 2975
BsmAI	GTCTC	5 cut(s)	479, 785, 1432, 1640, 3215
BsmFI	GGGAC	2 cut(s)	1259, 2975
BsmI	GAATGC	2 cut(s)	1775, 1857
BsnI	GGCC	9 cut(s)	5, 395, 411, 607, 815, 1829, 2439, 2681, 3233
Bso31I	GGTCTC	2 cut(s)	785, 1640
BsoBI	CYCGRG	1 cut(s)	2574
Bsp119I	TTCGAA	3 cut(s)	316, 2803, 2980
Bsp1286I	GDGCHC	2 cut(s)	1905, 3100
Bsp13I	TCCGGA	1 cut(s)	1930
Bsp19I	CCATGG	2 cut(s)	2087, 3339
Bsp68I	TCGCGA	1 cut(s)	163
BspACI	CCGC	9 cut(s)	169, 740, 892, 916, 1061, 1819, 2244, 2436, 2959
BspANI	GGCC	9 cut(s)	5, 395, 411, 607, 815, 1829, 2439, 2681, 3233
BspCNI	CTCAG	7 cut(s)	619, 756, 1128, 1409, 2026, 2077, 3115
BspDI	ATCGAT	1 cut(s)	2750
BspEI	TCCGGA	1 cut(s)	1930
BspFNI	CGCG	4 cut(s)	163, 169, 918, 1819
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	8 cut(s)	29, 210, 378, 925, 1245, 1297, 1707, 3242
BspMAI	CTGCAG	4 cut(s)	515, 555, 1048, 3458
BspQI	GCTCTTC	1 cut(s)	141
BspT104I	TTCGAA	3 cut(s)	316, 2803, 2980
BspT107I	GGYRCC	2 cut(s)	376, 923
BspTI	CTTAAG	2 cut(s)	619, 899
BspTNI	GGTCTC	2 cut(s)	785, 1640
BsrBI	CCGCTC	1 cut(s)	742
BsrDI	GCAATG	2 cut(s)	1830, 3426
BsrFI	RCCGGY	1 cut(s)	2955
BssAI	RCCGGY	1 cut(s)	2955
BssECI	CCNNGG	9 cut(s)	297, 424, 452, 596, 771, 2087, 2573, 2574, 3339
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	3 cut(s)	424, 2087, 3339
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	8 cut(s)	454, 532, 598, 772, 928, 944, 1637, 2102
Bst4CI	ACNGT	2 cut(s)	1336, 2013
Bst6I	CTCTTC	5 cut(s)	106, 141, 1884, 1960, 3086
BstAFI	CTTAAG	2 cut(s)	619, 899
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	46
BstBI	TTCGAA	3 cut(s)	316, 2803, 2980
BstC8I	GCNNGC	8 cut(s)	393, 502, 551, 717, 1219, 1761, 2369, 2663
BstDEI	CTNAG	9 cut(s)	627, 743, 1136, 1396, 2034, 2064, 2676, 3102, 3431
BstDSI	CCRYGG	2 cut(s)	2087, 3339
BstEII	GGTNACC	1 cut(s)	1573
BstFNI	CGCG	4 cut(s)	163, 169, 918, 1819
BstHHI	GCGC	1 cut(s)	1133
BstMAI	GTCTC	5 cut(s)	479, 785, 1432, 1640, 3215
BstMCI	CGRYCG	1 cut(s)	167
BstNI	CCWGG	8 cut(s)	454, 532, 598, 772, 928, 944, 1637, 2102
BstNSI	RCATGY	4 cut(s)	719, 1763, 2364, 2665
BstPI	GGTNACC	1 cut(s)	1573
BstSFI	CTRYAG	5 cut(s)	511, 551, 1044, 2633, 3454
BstSLI	GKGCMC	1 cut(s)	3100
BstUI	CGCG	4 cut(s)	163, 169, 918, 1819
BstV1I	GCAGC	8 cut(s)	46, 696, 699, 851, 1784, 1828, 2427, 3058
BstV2I	GAAGAC	3 cut(s)	1422, 2363, 3255
BstX2I	RGATCY	7 cut(s)	27, 208, 560, 930, 2386, 3240, 3495
BstXI	CCANNNNNNTGG	1 cut(s)	2141
BstYI	RGATCY	7 cut(s)	27, 208, 560, 930, 2386, 3240, 3495
Bsu15I	ATCGAT	1 cut(s)	2750
Bsu36I	CCTNAGG	2 cut(s)	2676, 3431
BsuI	GTATCC	2 cut(s)	2016, 3337
BsuRI	GGCC	9 cut(s)	5, 395, 411, 607, 815, 1829, 2439, 2681, 3233
BsuTUI	ATCGAT	1 cut(s)	2750
BtgI	CCRYGG	2 cut(s)	2087, 3339
BtgZI	GCGATG	2 cut(s)	1122, 3063
BtrI	CACGTC	1 cut(s)	1126
BtsIMutI	CAGTG	5 cut(s)	518, 1133, 1332, 1675, 2009
BtuMI	TCGCGA	1 cut(s)	163
Cac8I	GCNNGC	8 cut(s)	393, 502, 551, 717, 1219, 1761, 2369, 2663
CaiI	CAGNNNCTG	2 cut(s)	1844, 3109
CciI	TCATGA	1 cut(s)	723
CfoI	GCGC	1 cut(s)	1133
Cfr10I	RCCGGY	1 cut(s)	2955
Cfr13I	GGNCC	6 cut(s)	394, 409, 600, 605, 1296, 3320
Cfr9I	CCCGGG	1 cut(s)	2574
ClaI	ATCGAT	1 cut(s)	2750
CseI	GACGC	2 cut(s)	907, 1451
Csp6I	GTAC	6 cut(s)	97, 377, 690, 1358, 1539, 2158
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviQI	GTAC	6 cut(s)	97, 377, 690, 1358, 1539, 2158
DdeI	CTNAG	9 cut(s)	627, 743, 1136, 1396, 2034, 2064, 2676, 3102, 3431
DraI	TTTAAA	1 cut(s)	970
EaeI	YGGCCR	2 cut(s)	3, 2437
Eam1104I	CTCTTC	5 cut(s)	106, 141, 1884, 1960, 3086
EarI	CTCTTC	5 cut(s)	106, 141, 1884, 1960, 3086
EciI	GGCGGA	1 cut(s)	907
Ecl136II	GAGCTC	1 cut(s)	1903
Eco130I	CCWWGG	3 cut(s)	424, 2087, 3339
Eco24I	GRGCYC	1 cut(s)	1905
Eco31I	GGTCTC	2 cut(s)	785, 1640
Eco47I	GGWCC	3 cut(s)	600, 1296, 3320
Eco53kI	GAGCTC	1 cut(s)	1903
Eco57I	CTGAAG	6 cut(s)	371, 1209, 1269, 1821, 2582, 3389
Eco81I	CCTNAGG	2 cut(s)	2676, 3431
Eco88I	CYCGRG	1 cut(s)	2574
Eco91I	GGTNACC	1 cut(s)	1573
EcoICRI	GAGCTC	1 cut(s)	1903
EcoO109I	RGGNCCY	1 cut(s)	409
EcoO65I	GGTNACC	1 cut(s)	1573
EcoRI	GAATTC	2 cut(s)	674, 2805
EcoRII	CCWGG	8 cut(s)	452, 530, 596, 770, 926, 942, 1635, 2100
EcoT14I	CCWWGG	3 cut(s)	424, 2087, 3339
EcoT22I	ATGCAT	4 cut(s)	702, 1161, 1761, 2663
EcoT38I	GRGCYC	1 cut(s)	1905
ErhI	CCWWGG	3 cut(s)	424, 2087, 3339
FalI	AAGNNNNNCTT	2 cut(s)	1201, 1233
FaqI	GGGAC	2 cut(s)	1259, 2975
FauI	CCCGC	1 cut(s)	2952
FauNDI	CATATG	1 cut(s)	3508
FbaI	TGATCA	2 cut(s)	1591, 2970
Fnu4HI	GCNGC	9 cut(s)	60, 710, 713, 840, 1773, 1842, 2416, 2437, 3047
FriOI	GRGCYC	1 cut(s)	1905
Fsp4HI	GCNGC	9 cut(s)	60, 710, 713, 840, 1773, 1842, 2416, 2437, 3047
FspBI	CTAG	4 cut(s)	2051, 2780, 2814, 3383
GlaI	GCGC	1 cut(s)	1132
GluI	GCNGC	9 cut(s)	60, 710, 713, 840, 1773, 1842, 2416, 2437, 3047
GsaI	CCCAGC	3 cut(s)	231, 1900, 3206
GsuI	CTGGAG	4 cut(s)	542, 670, 3130, 3485
HaeIII	GGCC	9 cut(s)	5, 395, 411, 607, 815, 1829, 2439, 2681, 3233
HapII	CCGG	9 cut(s)	603, 671, 880, 1321, 1931, 2016, 2575, 2956, 3237
HgaI	GACGC	2 cut(s)	907, 1451
HhaI	GCGC	1 cut(s)	1133
Hin6I	GCGC	1 cut(s)	1131
HinP1I	GCGC	1 cut(s)	1131
HincII	GTYRAC	5 cut(s)	448, 2491, 2767, 2994, 3517
HindII	GTYRAC	5 cut(s)	448, 2491, 2767, 2994, 3517
HindIII	AAGCTT	6 cut(s)	896, 1027, 1301, 2942, 3272, 3371
HinfI	GANTC	8 cut(s)	116, 1087, 1598, 1737, 2320, 2747, 2857, 3379
HpaI	GTTAAC	2 cut(s)	2767, 3517
HpaII	CCGG	9 cut(s)	603, 671, 880, 1321, 1931, 2016, 2575, 2956, 3237
HphI	GGTGA	7 cut(s)	584, 1075, 1466, 1585, 1804, 2365, 3206
Hpy99I	CGWCG	5 cut(s)	446, 803, 923, 1467, 1569
HpyCH4III	ACNGT	2 cut(s)	1336, 2013
HpyCH4IV	ACGT	5 cut(s)	45, 444, 1125, 1272, 2653
HpyF3I	CTNAG	9 cut(s)	627, 743, 1136, 1396, 2034, 2064, 2676, 3102, 3431
HpySE526I	ACGT	5 cut(s)	45, 444, 1125, 1272, 2653
HspAI	GCGC	1 cut(s)	1131
Kpn2I	TCCGGA	1 cut(s)	1930
KpnI	GGTACC	1 cut(s)	380
Ksp22I	TGATCA	2 cut(s)	1591, 2970
KspAI	GTTAAC	2 cut(s)	2767, 3517
LguI	GCTCTTC	1 cut(s)	141
Lsp1109I	GCAGC	8 cut(s)	46, 696, 699, 851, 1784, 1828, 2427, 3058
MaeI	CTAG	4 cut(s)	2051, 2780, 2814, 3383
MaeII	ACGT	5 cut(s)	45, 444, 1125, 1272, 2653
MaeIII	GTNAC	5 cut(s)	875, 1076, 1573, 2026, 2206
MbiI	CCGCTC	1 cut(s)	742
MfeI	CAATTG	2 cut(s)	54, 1229
MflI	RGATCY	7 cut(s)	27, 208, 560, 930, 2386, 3240, 3495
MhlI	GDGCHC	2 cut(s)	1905, 3100
MlyI	GAGTC	1 cut(s)	1746
MmeI	TCCRAC	4 cut(s)	5, 1128, 1609, 2188
Mph1103I	ATGCAT	4 cut(s)	702, 1161, 1761, 2663
MroI	TCCGGA	1 cut(s)	1930
MslI	CAYNNNNRTG	3 cut(s)	2457, 2484, 2796
MspA1I	CMGCKG	3 cut(s)	391, 1841, 3049
MspCI	CTTAAG	2 cut(s)	619, 899
MspI	CCGG	9 cut(s)	603, 671, 880, 1321, 1931, 2016, 2575, 2956, 3237
MunI	CAATTG	2 cut(s)	54, 1229
Mva1269I	GAATGC	2 cut(s)	1775, 1857
MvaI	CCWGG	8 cut(s)	454, 532, 598, 772, 928, 944, 1637, 2102
MvnI	CGCG	4 cut(s)	163, 169, 918, 1819
NciI	CCSGG	7 cut(s)	604, 671, 1321, 2017, 2575, 2576, 3238
NcoI	CCATGG	2 cut(s)	2087, 3339
NdeI	CATATG	1 cut(s)	3508
NlaIV	GGNNCC	8 cut(s)	29, 210, 378, 925, 1245, 1297, 1707, 3242
NmeAIII	GCCGAG	1 cut(s)	1926
NmuCI	GTSAC	3 cut(s)	1573, 2026, 2206
NruI	TCGCGA	1 cut(s)	163
NsiI	ATGCAT	4 cut(s)	702, 1161, 1761, 2663
NspI	RCATGY	4 cut(s)	719, 1763, 2364, 2665
NspV	TTCGAA	3 cut(s)	316, 2803, 2980
PaeI	GCATGC	3 cut(s)	719, 1763, 2665
PagI	TCATGA	1 cut(s)	723
PciI	ACATGT	1 cut(s)	2360
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	3 cut(s)	313, 795, 807
PctI	GAATGC	2 cut(s)	1775, 1857
PfeI	GAWTC	7 cut(s)	116, 1087, 1598, 2320, 2747, 2857, 3379
PflMI	CCANNNNNTGG	3 cut(s)	537, 597, 1642
PfoI	TCCNGGA	3 cut(s)	942, 2015, 3236
PkrI	GCNGC	9 cut(s)	61, 711, 714, 841, 1774, 1843, 2417, 2438, 3048
Ple19I	CGATCG	1 cut(s)	167
PleI	GAGTC	1 cut(s)	1745
PpsI	GAGTC	1 cut(s)	1745
Ppu21I	YACGTR	1 cut(s)	46
PscI	ACATGT	1 cut(s)	2360
PshBI	ATTAAT	1 cut(s)	1203
Psp124BI	GAGCTC	1 cut(s)	1905
Psp6I	CCWGG	8 cut(s)	452, 530, 596, 770, 926, 942, 1635, 2100
PspEI	GGTNACC	1 cut(s)	1573
PspFI	CCCAGC	3 cut(s)	227, 1896, 3202
PspGI	CCWGG	8 cut(s)	452, 530, 596, 770, 926, 942, 1635, 2100
PspN4I	GGNNCC	8 cut(s)	29, 210, 378, 925, 1245, 1297, 1707, 3242
PspPI	GGNCC	6 cut(s)	394, 409, 600, 605, 1296, 3320
PsrI	GAACNNNNNNTAC	2 cut(s)	80, 112
PstI	CTGCAG	4 cut(s)	515, 555, 1048, 3458
PstNI	CAGNNNCTG	2 cut(s)	1844, 3109
PsuI	RGATCY	7 cut(s)	27, 208, 560, 930, 2386, 3240, 3495
PvuI	CGATCG	1 cut(s)	167
PvuII	CAGCTG	3 cut(s)	391, 1841, 3049
RgaI	GCGATCGC	1 cut(s)	167
RruI	TCGCGA	1 cut(s)	163
RsaI	GTAC	6 cut(s)	98, 378, 691, 1359, 1540, 2159
RsaNI	GTAC	6 cut(s)	97, 377, 690, 1358, 1539, 2158
RseI	CAYNNNNRTG	3 cut(s)	2457, 2484, 2796
SacI	GAGCTC	1 cut(s)	1905
SapI	GCTCTTC	1 cut(s)	141
SatI	GCNGC	9 cut(s)	60, 710, 713, 840, 1773, 1842, 2416, 2437, 3047
Sau96I	GGNCC	6 cut(s)	394, 409, 600, 605, 1296, 3320
SbfI	CCTGCAGG	1 cut(s)	3458
ScaI	AGTACT	2 cut(s)	691, 1540
SchI	GAGTC	1 cut(s)	1746
SdaI	CCTGCAGG	1 cut(s)	3458
SduI	GDGCHC	2 cut(s)	1905, 3100
SfaAI	GCGATCGC	1 cut(s)	167
SfcI	CTRYAG	5 cut(s)	511, 551, 1044, 2633, 3454
SfuI	TTCGAA	3 cut(s)	316, 2803, 2980
SgfI	GCGATCGC	1 cut(s)	167
SinI	GGWCC	3 cut(s)	600, 1296, 3320
SmaI	CCCGGG	1 cut(s)	2576
SmiMI	CAYNNNNRTG	3 cut(s)	2457, 2484, 2796
SmlI	CTYRAG	4 cut(s)	619, 899, 2896, 3134
SmoI	CTYRAG	4 cut(s)	619, 899, 2896, 3134
SphI	GCATGC	3 cut(s)	719, 1763, 2665
Sse8387I	CCTGCAGG	1 cut(s)	3458
SsiI	CCGC	9 cut(s)	169, 740, 892, 916, 1061, 1819, 2244, 2436, 2959
SspI	AATATT	1 cut(s)	2866
SspMI	CTAG	4 cut(s)	2051, 2780, 2814, 3383
SstI	GAGCTC	1 cut(s)	1905
StyI	CCWWGG	3 cut(s)	424, 2087, 3339
TaaI	ACNGT	2 cut(s)	1336, 2013
TaiI	ACGT	5 cut(s)	48, 447, 1128, 1275, 2656
TaqI	TCGA	7 cut(s)	316, 441, 798, 2457, 2750, 2803, 2980
TatI	WGTACW	3 cut(s)	96, 689, 1538
TauI	GCSGC	1 cut(s)	2439
TfiI	GAWTC	7 cut(s)	116, 1087, 1598, 2320, 2747, 2857, 3379
TscAI	CASTG	5 cut(s)	525, 1140, 1339, 1682, 2016
TseFI	GTSAC	3 cut(s)	1573, 2026, 2206
TseI	GCWGC	8 cut(s)	59, 709, 712, 839, 1772, 1841, 2415, 3046
Tsp45I	GTSAC	3 cut(s)	1573, 2026, 2206
TspGWI	ACGGA	1 cut(s)	1553
TspMI	CCCGGG	1 cut(s)	2574
TspRI	CASTG	5 cut(s)	525, 1140, 1339, 1682, 2016
Van91I	CCANNNNNTGG	3 cut(s)	537, 597, 1642
Vha464I	CTTAAG	2 cut(s)	619, 899
VneI	GTGCAC	1 cut(s)	3096
VpaK11BI	GGWCC	3 cut(s)	600, 1296, 3320
VspI	ATTAAT	1 cut(s)	1203
XapI	RAATTY	9 cut(s)	674, 971, 1803, 2136, 2179, 2497, 2670, 2805, 3295
XbaI	TCTAGA	1 cut(s)	3382
XceI	RCATGY	4 cut(s)	719, 1763, 2364, 2665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2171
XmaI	CCCGGG	1 cut(s)	2574
XspI	CTAG	4 cut(s)	2051, 2780, 2814, 3383
ZrmI	AGTACT	2 cut(s)	691, 1540
Zsp2I	ATGCAT	4 cut(s)	702, 1161, 1761, 2663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.