Rroxscaffold_2G00100680

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
22475261 .. 22477596
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100680.1

Sequence Viewer

Length: 1179 bp
ATGGAGCCACCGGATCACGGTGATTCGAAACCATTGAATTGCCGTTATGATGCACAGATTTCGGTTTTAGGTCCAAGCCACAGCGAAGCGGGTGATGCCAAAGTATTCATGATTGGGTACGGTACACTCAAATTAAGCGAGATCCTCTTCCGTGATTGGAACATTGGGTGGGCAAAGTCTACGATTGCCGCTTCTACTGCTGCATCAATAAATCCCCGTCCCCGTCTCGACATTGTAGCGTTGCATAATAGGGTTCGACACGAAAGCGAGAATGTGTTTGATGACACCATGCGGGGGAGTCCAAGTGTTGATCTTAATGCAGTACATAATGTCAATGGCAAGCTCTATATCACAGATGATAAGGATCTCTCTGATTTAAACAACATTCGGAACCGGCTCATTCAACTGCCAAAAACAAGCAATAAGGTGGTATCCCATGTCAGCTCGTTAAGCAAGGAGCTGGAGCACATGCATAAGCTGTTGGAAGATACAAAAGCAACTGAATATGCCGGTAATTTTAGAAATTCTTGCTTGGAGCAATTGAAGAAAATGGTTTTTGAAGCAGAGCGGTACTCAATAACCCACATGGAGGACTCTGACTCAGAGTGTATGTCTGAGATTCAACGAATCACAGATGCTGTCATTCTTTTTCAACAATGTGTGAAAGTATACTCCATTGAGGTCAGGAAGGAGTCATGCTCGGTCGTTGGGTTTGACGAAGACATATATAAACTGGTCCAGCAATTGACAGCTAACAGTGAATTGCATATCATTTCTGTTGGGGGAATGAAGGGCATTGGTAAGACAACTCTGGCGAAGAAAGTTTATCACCATGGTACCATTGCAAGCCATTTTAAAGTCCGACGATGGGTATCTGTACCTCACATGCATAATGAAAATGCACTTTTGAGAAGTGTTGGAAGCCAGATTGTGAAGAGCGAAGAGAAATGGAGTGCAAAAGATTTCTGGATCAAGAACGTGCGTGATTTCTTGAAGGAGAAGCGATACCTTTTAGTTTTGGACAATGTCCCATCAAAGGAAGTCTTGGATTCTCTTAAAGCAGCATTATTTCCAAAAATGATGAATGGGAGTAAGGTTGTGCTAACCACAAACAGCAAGGCCCTGGCTTTACATGTTGATACTGACCAAAGTAGTACTCAATATCCAATTCGGCTATGA

Protein Analysis

392

Amino Acids

44.25

Weight (kDa)

8.14

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 240 - 381 8.9e-28 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 836
AccB1I GGYRCC 1 cut(s) 836
AccBSI CCGCTC 1 cut(s) 568
AccI GTMKAC 2 cut(s) 179, 669
AciI CCGC 4 cut(s) 89, 189, 292, 568
AclWI GGATC 4 cut(s) 21, 136, 372, 977
AcsI RAATTY 1 cut(s) 523
AfaI GTAC 7 cut(s) 119, 124, 324, 572, 838, 879, 1156
AfiI CCNNNNNNNGG 5 cut(s) 17, 294, 589, 868, 1036
AflIII ACRYGT 1 cut(s) 1132
AgsI TTSAA 7 cut(s) 37, 404, 544, 560, 623, 653, 994
AjnI CCWGG 1 cut(s) 1122
AluBI AGCT 5 cut(s) 343, 444, 460, 478, 752
AluI AGCT 5 cut(s) 343, 444, 460, 478, 752
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 4 cut(s) 21, 136, 372, 977
AlwNI CAGNNNCTG 1 cut(s) 638
AoxI GGCC 1 cut(s) 1119
ApeKI GCWGC 2 cut(s) 200, 1061
ApoI RAATTY 1 cut(s) 523
Asp718I GGTACC 1 cut(s) 836
AspS9I GGNCC 3 cut(s) 71, 736, 1120
AsuHPI GGTGA 3 cut(s) 32, 104, 821
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 2 cut(s) 71, 736
BaeI ACNNNNGTAYC 2 cut(s) 820, 853
BanI GGYRCC 1 cut(s) 836
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 187, 1073
BccI CCATC 2 cut(s) 861, 1039
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BciT130I CCWGG 1 cut(s) 1124
BciVI GTATCC 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 230
BfuI GTATCC 1 cut(s) 442
BisI GCNGC 3 cut(s) 189, 201, 1062
BlsI GCNGC 3 cut(s) 190, 202, 1063
BmcAI AGTACT 1 cut(s) 1156
Bme1390I CCNGG 1 cut(s) 1124
Bme18I GGWCC 2 cut(s) 71, 736
BmgT120I GGNCC 3 cut(s) 71, 736, 1120
BmiI GGNNCC 3 cut(s) 6, 392, 838
BmrFI CCNGG 1 cut(s) 1124
BmsI GCATC 4 cut(s) 40, 85, 212, 625
BpiI GAAGAC 1 cut(s) 726
BplI GAGNNNNNCTC 4 cut(s) 557, 589, 683, 715
BpmI CTGGAG 1 cut(s) 482
Bpu14I TTCGAA 1 cut(s) 26
BsaBI GATNNNNATC 2 cut(s) 363, 871
BsaJI CCNNGG 2 cut(s) 832, 1122
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 294, 589, 868, 1036
Bse118I RCCGGY 2 cut(s) 393, 509
Bse1I ACTGG 1 cut(s) 738
Bse3DI GCAATG 1 cut(s) 840
Bse8I GATNNNNATC 2 cut(s) 363, 871
BseBI CCWGG 1 cut(s) 1124
BseDI CCNNGG 2 cut(s) 832, 1122
BseJI GATNNNNATC 2 cut(s) 363, 871
BseLI CCNNNNNNNGG 5 cut(s) 17, 294, 589, 868, 1036
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 2 cut(s) 606, 615
BseNI ACTGG 1 cut(s) 738
BseXI GCAGC 2 cut(s) 187, 1073
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 1 cut(s) 1121
BshNI GGYRCC 1 cut(s) 836
BsiEI CGRYCG 1 cut(s) 705
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 3 cut(s) 11, 394, 510
BslFI GGGAC 2 cut(s) 204, 1013
BslI CCNNNNNNNGG 5 cut(s) 17, 294, 589, 868, 1036
BsmAI GTCTC 1 cut(s) 230
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 204, 1013
BsnI GGCC 1 cut(s) 1121
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 5 cut(s) 13, 141, 310, 364, 969
Bsp19I CCATGG 1 cut(s) 832
BspACI CCGC 4 cut(s) 89, 189, 292, 568
BspANI GGCC 1 cut(s) 1121
BspCNI CTCAG 2 cut(s) 607, 614
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 6, 392, 838
BspPI GGATC 4 cut(s) 21, 136, 372, 977
BspQI GCTCTTC 1 cut(s) 929
BspT104I TTCGAA 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 836
BsrBI CCGCTC 1 cut(s) 568
BsrDI GCAATG 1 cut(s) 840
BsrFI RCCGGY 2 cut(s) 393, 509
BsrI ACTGG 1 cut(s) 738
BssAI RCCGGY 2 cut(s) 393, 509
BssECI CCNNGG 2 cut(s) 832, 1122
BssMI GATC 5 cut(s) 13, 141, 310, 364, 969
BssNAI GTATAC 1 cut(s) 670
BssT1I CCWWGG 1 cut(s) 832
Bst1107I GTATAC 1 cut(s) 670
Bst2UI CCWGG 1 cut(s) 1124
Bst4CI ACNGT 3 cut(s) 20, 122, 758
Bst6I CTCTTC 3 cut(s) 152, 929, 936
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 341, 847
BstDEI CTNAG 2 cut(s) 601, 615
BstDSI CCRYGG 1 cut(s) 832
BstKTI GATC 5 cut(s) 16, 144, 313, 367, 972
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 5 cut(s) 13, 141, 310, 364, 969
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 3 cut(s) 95, 197, 450
BstNI CCWGG 1 cut(s) 1124
BstNSI RCATGY 3 cut(s) 472, 889, 1136
BstSCI CCNGG 1 cut(s) 1122
BstV1I GCAGC 2 cut(s) 187, 1073
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 2 cut(s) 141, 364
BstYI RGATCY 2 cut(s) 141, 364
BstZ17I GTATAC 1 cut(s) 670
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 1 cut(s) 1121
BtgI CCRYGG 1 cut(s) 832
BtsIMutI CAGTG 1 cut(s) 763
Cac8I GCNNGC 2 cut(s) 341, 847
CaiI CAGNNNCTG 1 cut(s) 638
CciI TCATGA 1 cut(s) 108
Cfr10I RCCGGY 2 cut(s) 393, 509
Cfr13I GGNCC 3 cut(s) 71, 736, 1120
Csp6I GTAC 7 cut(s) 118, 123, 323, 571, 837, 878, 1155
CviAII CATG 9 cut(s) 109, 289, 437, 469, 586, 696, 833, 886, 1133
CviQI GTAC 7 cut(s) 118, 123, 323, 571, 837, 878, 1155
DdeI CTNAG 2 cut(s) 601, 615
DpnI GATC 5 cut(s) 15, 143, 312, 366, 971
DpnII GATC 5 cut(s) 13, 141, 310, 364, 969
DraI TTTAAA 2 cut(s) 378, 856
Eam1104I CTCTTC 3 cut(s) 152, 929, 936
EarI CTCTTC 3 cut(s) 152, 929, 936
Eco130I CCWWGG 1 cut(s) 832
Eco47I GGWCC 2 cut(s) 71, 736
EcoO109I RGGNCCY 1 cut(s) 1120
EcoRII CCWGG 1 cut(s) 1122
EcoT14I CCWWGG 1 cut(s) 832
EcoT22I ATGCAT 2 cut(s) 474, 891
ErhI CCWWGG 1 cut(s) 832
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 9 cut(s) 112, 292, 440, 472, 589, 699, 836, 889, 1136
FalI AAGNNNNNCTT 2 cut(s) 1028, 1060
FaqI GGGAC 2 cut(s) 204, 1013
FatI CATG 9 cut(s) 108, 288, 436, 468, 585, 695, 832, 885, 1132
FauI CCCGC 2 cut(s) 82, 285
FblI GTMKAC 2 cut(s) 179, 669
Fnu4HI GCNGC 3 cut(s) 189, 201, 1062
Fsp4HI GCNGC 3 cut(s) 189, 201, 1062
GluI GCNGC 3 cut(s) 189, 201, 1062
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 1 cut(s) 1121
HapII CCGG 3 cut(s) 11, 394, 510
Hin1II CATG 9 cut(s) 112, 292, 440, 472, 589, 699, 836, 889, 1136
HinfI GANTC 8 cut(s) 23, 298, 593, 599, 619, 627, 692, 1049
HpaII CCGG 3 cut(s) 11, 394, 510
HphI GGTGA 3 cut(s) 32, 104, 821
Hpy166II GTNNAC 3 cut(s) 125, 180, 670
Hpy188I TCNGA 6 cut(s) 373, 390, 598, 604, 616, 863
Hpy188III TCNNGA 6 cut(s) 109, 227, 685, 967, 973, 991
Hpy8I GTNNAC 3 cut(s) 125, 180, 670
Hpy99I CGWCG 1 cut(s) 867
HpyAV CCTTC 3 cut(s) 682, 784, 988
HpyCH4III ACNGT 3 cut(s) 20, 122, 758
HpyCH4IV ACGT 1 cut(s) 978
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 197, 450
HpyF3I CTNAG 2 cut(s) 601, 615
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 9 cut(s) 112, 292, 440, 472, 589, 699, 836, 889, 1136
KpnI GGTACC 1 cut(s) 840
Kzo9I GATC 5 cut(s) 13, 141, 310, 364, 969
LguI GCTCTTC 1 cut(s) 929
LmnI GCTCC 4 cut(s) 4, 457, 463, 535
Lsp1109I GCAGC 2 cut(s) 187, 1073
LweI GCATC 4 cut(s) 40, 85, 212, 625
MaeII ACGT 1 cut(s) 978
MalI GATC 5 cut(s) 15, 143, 312, 366, 971
MbiI CCGCTC 1 cut(s) 568
MboI GATC 5 cut(s) 13, 141, 310, 364, 969
MboII GAAGA 7 cut(s) 139, 497, 556, 731, 829, 946, 953
MfeI CAATTG 2 cut(s) 539, 743
MflI RGATCY 2 cut(s) 141, 364
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 8 cut(s) 37, 131, 514, 523, 539, 743, 761, 1167
MlyI GAGTC 4 cut(s) 307, 587, 593, 701
MmeI TCCRAC 3 cut(s) 462, 886, 898
MnlI CCTC 4 cut(s) 155, 583, 673, 891
Mph1103I ATGCAT 2 cut(s) 474, 891
MseI TTAA 6 cut(s) 134, 315, 377, 449, 855, 1056
MspI CCGG 3 cut(s) 11, 394, 510
MspR9I CCNGG 1 cut(s) 1124
MunI CAATTG 2 cut(s) 539, 743
MvaI CCWGG 1 cut(s) 1124
MwoI GCNNNNNNNGC 3 cut(s) 95, 197, 450
NcoI CCATGG 1 cut(s) 832
NdeII GATC 5 cut(s) 13, 141, 310, 364, 969
NlaIII CATG 9 cut(s) 112, 292, 440, 472, 589, 699, 836, 889, 1136
NlaIV GGNNCC 3 cut(s) 6, 392, 838
NsiI ATGCAT 2 cut(s) 474, 891
NspI RCATGY 3 cut(s) 472, 889, 1136
NspV TTCGAA 1 cut(s) 26
PagI TCATGA 1 cut(s) 108
PciI ACATGT 1 cut(s) 1132
PciSI GCTCTTC 1 cut(s) 929
PfeI GAWTC 4 cut(s) 23, 619, 627, 1049
PflFI GACNNNGTC 1 cut(s) 1025
PkrI GCNGC 3 cut(s) 190, 202, 1063
PleI GAGTC 4 cut(s) 306, 587, 593, 700
PpsI GAGTC 4 cut(s) 306, 587, 593, 700
PscI ACATGT 1 cut(s) 1132
Psp6I CCWGG 1 cut(s) 1122
PspGI CCWGG 1 cut(s) 1122
PspN4I GGNNCC 3 cut(s) 6, 392, 838
PspPI GGNCC 3 cut(s) 71, 736, 1120
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 2 cut(s) 141, 364
PsyI GACNNNGTC 1 cut(s) 1025
RsaI GTAC 7 cut(s) 119, 124, 324, 572, 838, 879, 1156
RsaNI GTAC 7 cut(s) 118, 123, 323, 571, 837, 878, 1155
SapI GCTCTTC 1 cut(s) 929
SaqAI TTAA 6 cut(s) 134, 315, 377, 449, 855, 1056
SatI GCNGC 3 cut(s) 189, 201, 1062
Sau3AI GATC 5 cut(s) 13, 141, 310, 364, 969
Sau96I GGNCC 3 cut(s) 71, 736, 1120
ScaI AGTACT 1 cut(s) 1156
SchI GAGTC 4 cut(s) 307, 587, 593, 701
ScrFI CCNGG 1 cut(s) 1124
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 4 cut(s) 40, 85, 212, 625
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 2 cut(s) 71, 736
Sse9I AATT 8 cut(s) 37, 131, 514, 523, 539, 743, 761, 1167
SsiI CCGC 4 cut(s) 89, 189, 292, 568
StyD4I CCNGG 1 cut(s) 1122
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 3 cut(s) 20, 122, 758
TaiI ACGT 1 cut(s) 981
TaqI TCGA 3 cut(s) 26, 228, 256
TaqII GACCGA 1 cut(s) 691
TasI AATT 8 cut(s) 37, 131, 514, 523, 539, 743, 761, 1167
TatI WGTACW 2 cut(s) 322, 1154
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 4 cut(s) 23, 619, 627, 1049
Tru1I TTAA 6 cut(s) 134, 315, 377, 449, 855, 1056
Tru9I TTAA 6 cut(s) 134, 315, 377, 449, 855, 1056
TscAI CASTG 1 cut(s) 763
TseI GCWGC 2 cut(s) 200, 1061
TspDTI ATGAA 4 cut(s) 97, 803, 909, 1097
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 1 cut(s) 763
Tth111I GACNNNGTC 1 cut(s) 1025
VpaK11BI GGWCC 2 cut(s) 71, 736
XapI RAATTY 1 cut(s) 523
XceI RCATGY 3 cut(s) 472, 889, 1136
XmiI GTMKAC 2 cut(s) 179, 669
ZrmI AGTACT 1 cut(s) 1156
Zsp2I ATGCAT 2 cut(s) 474, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.