Rh2CG433300

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
58922472 .. 58926166
3695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG433300.1

Sequence Viewer

Length: 3585 bp
ATGCCATTAGTGCTTACAGATTCAATTCCAGAATTTATTAAATCTAATCCAGACTCACCCCATTCTTGCATTAATCCAATTTTTCACATCCACATTGCCACTGTATACGATTCAAGTTGCAGCTACATTTTGGATGAGAAGAAGCACCCCATGGCCGGACTATTCGACCTCTGTTGCATTTTCCTTGGGTTTTACGTCATTTGTGTCGTCGCAAGCGAACTTGCTTACAGATACTCGAAGGGGAAGTACAAGTGGATTAAAAGAGAATTGAAGTTTTTGAGTGCTCTTCTTAAAGATTTTGACGAGGTTACCATGTCAGGGAATCAAATAACACAGGAAATTGGAGTGACTGTGCAAGTAATGAAGGAGAGGGAGGAAAACTGGAAGAAGAGAGCAAGAACTGTTGCTGATGAAGCAACCTTGGCCCTTCAAAGCTTTGCAAAACTGACGAAGAGAAGAAGTTATCACAAGCGGCTTCTTTACGTCATTCTTGATCCGGTAGCGGTGGTTGATGCTGTCCTTGCAATGAACATGTTCGAGCAGAGGATAAATAATATTGTTGGGATGAATCGGAAAGGAGTGAAGCAGACCACAGGTGCCGGTGACATTAATGTATCACTGGAGCAGTCAAGGTCCAAGATCAGAAGCCTTATGAATAGATTCAGTGTTGATGAGATTGAGTCGGTCATGTCCAGACCACCAAGAGCTGATGAATTGACTTTATATCCAAAGTACGTGATGACTGGAGACCTAGATTTGTTGTGTGGCATTCATCATGAGCAAATAAAGTCCGCCGCGATGCATTTACAGCTACTGCATGCTTTCATGGAAGATTTACAGCGGCTCAAAGTGGTGGAAAGTGATATGGAAAGGTGCTGGATGACAGAAGCAATTGAAACCATTGAGGAAGCAAAGGCTGTCATCAACAGAAACCAGAGAATGTGGCTTTCAGAATTCAATGATGGGATGGCCAGGCGGAAGCTTAAGAAGGGTATAATGCACATTGGCGCCCGCATCTCTGACCTTCAGGAAACAAAAGAAAAATATGGTATCAAATTCATTCGGCGACAATCATCAAAATCTGCTGACAGGTTTCCTCAACAGCATGCCTCTCAATACCTTCCAACTACAGATGATACTTGTTTGTCATCTCCGGTCAGGAACATTCGTAATTGGCTCAGTCAAGTGCAAGAAACAAGCACCAACTCAGTACAAGATGAGTTGGAGCAGGTTCATAAACTCTTGCAACATACAAAAGGAACTGAAGATTATGGTGCTGTTAATTTAAGAAATACTTGCTGGCAACTACTGAAAAAAAAAGCATCCGAAGCAGATCAGCAATTGATGTCAAACATTCCCTCAAGAATGATATTAACCCGAATTAAGAATACTCTTAGTCTTCTTCTGAGATGCCTACAAGTATATTCAATTGAGGTAAGGGTGGATTCATGCTCAGTAGTTGGTTTGGAAGAAGACATACATGCACTGGTCTCAACTCTCACTACTGAGAGTGGATCTGCTAGTTCTATCATATCCATTGTGGGGATGAAAGGCATTGGTAAGACCACACTGGCCAAGAAAGTATATGACCATGATGCCATTCGAAGCCATTTTAAAGTCCGTCGTTGGGTATCTATACCTCAACAGTATGATGATGAAAACACACTTTTCAGTAGTGCGGGAAACCAGGTGCTGGAGACGCAAAATAAGGGGTATGAAAAACAATTGTTGATGAAATCAATGCAGGATTTCTTCAAGGAACTTGGTAAGAAAAACTCCAGGTGCCTCTTAATTTTTGACAATGTCTCATCAAACAAAGAAATGTATGCTCTCAAGACAGCATTTTCCCCAGGGAGAAATGGGAGTATTGTTCTAATCACACGCAACAAGACCGTTGGTTCAAATGCTGATCAAAATAGCATTCCCCACCAAGTTCGGCTACGAACTAAAGAAGAGAGCTGGGAGCTTTTTAGCCAAATGGTGGAGTTCTCTGCTGAAGAAATGACTAGTGCAAAGGAAGTTGTAGGATGGAAACTTGGAGGCCTCCCACTTGACATCATGACTGTTGGCTTTCTACTGTGGGGGAAGAAAGTCACATCCGAGGAAGTTTTCAGGGCGGTTGACCGTATCACTCAAGGACAGAACCAAAGTCCATGGTCAGAGAATCTGGCAATGATTGAAGAAGAGTTGCAGTTCCATATGATTCTGAGAAAATGTTTTTCTTATTTCAAACTCTTCCCTAGAGAATCTGAAATCCCCATTAGAAGAATTCTGGCTTCCTTAGTTGCACAAGGGTTTGTACAACTAAGCAGAGATCAGAAAATAAATCTAGAAAGTGTAGCATTGGAGTATTTATCAGAGTTGATTGGCCGGAGTATGATTCAAGTAGTTCAAAGGAAGCCTAATGGAATGTTCAAGACATGTCGCATGCCTCCTGCTGTGCATGATCTCTTGTTTGAAGACAAAGCCAAACAATCATTCTCGTACGCAACTACAGGTTTTGCAGGGCAACTTGCCTTTCAGTTTGATGATAATGGAACTGGTGCCAGTTTCCTTCCCATTTATGGTCTCAACACAAGTTTGCCAAATGCTCTGCGGAAAGAAAGCATTCTAGTTTTTGAGAATGGAGAAGGAAACAAACCAAGAATGGAAGGTGAATTACTTGGCAGACGCATTAGGGCTGGTGCCTTCTCGCAGCTACTGGTTCTAGACTTTGAATGTGTAAGCGTCTCTCAATTGCCAACAATCCTTGGAAAACTAAAGCAGCTGGCATATCTTGGCTTAAGACGGACTGAGCTGGAGACGATTCCAGCATCTATAGGGAACTTGGTGAATCTTCAAACCCTGGATTTGAAGCATACTCATGTTCACACTCTCCCTGGTTCAATTTGGAAACTGAAGAATCTTCGGCATCTATACATGCACCAGAGATGTCGAATCAAATTTATGGCTTTACCAACAGCCATTTCAATGAGGAATCTGCAGACACTATCAGGTATATTCTTGGGTAAGATTAACCTTGTAAAGGACCGGCTTGACAAGTTAATCCACCTTCGAAAACTGGAATTGGCATTCCAGCTGAAACCAACAGAGCAAAAGGTGTTGGAAAAGTGGATTGTGAAGCTAACATGTTTACAGTCTTTAAAGTTGAAATCATTTAGTGCAAATGGTGAACTTCCAAAGCTAGAGCGTATCTCAGACCTTAAGAACCTGCACAGCCTATATTTATTTGGAAAGCTTGAATACTCATTCATCACTCGACTCCCTGAAAGCCTCACTCATCTTACCTTAGCAGCTTCTAGCCTCAGAAAAGATCCAATGCCAGAGTTAGGGAAGCTTCCAAAGCTGAAATCACTTTCTCTGAAGTCTGGTTCTTATCAAGGAACAGGCATGGTATGCTCTACTGATTATTTTCCCCTGCTTTTTGTTCTCAAACTTTGGAATCTAGATACTCTGGGGAAATTGGATGTGCATGAAGGAGCAATGCAAAATCTTAGGGAGTTTGAGATTAAATTTTGCAACAACTTTACAAGCACTACTGGATTGGAACATTTAAAGAACCTTCAGAAATATAGAGTGAACTGA

Protein Analysis

1194

Amino Acids

136.08

Weight (kDa)

9.24

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 490 - 661 1.6e-27 NB-ARC domain
WHD_DRP PF23559 745 - 817 7.4e-12 Disease resistance protein Winged helix domain
LRR_14 PF23598 896 - 1193 2.6e-39 Leucine-rich repeat region
LRR_8 PF13855 922 - 975 1.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1219, 3219
AccB1I GGYRCC 5 cut(s) 596, 1007, 1782, 2543, 2684
AccB7I CCANNNNNTGG 2 cut(s) 1693, 1981
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 797
AclWI GGATC 3 cut(s) 488, 1522, 3308
AcoI YGGCCR 4 cut(s) 153, 969, 1572, 2368
AcsI RAATTY 6 cut(s) 32, 953, 1055, 2268, 2942, 3512
AcuI CTGAAG 6 cut(s) 1010, 1284, 2016, 2918, 3383, 3548
AcyI GRCGYC 1 cut(s) 1008
AfaI GTAC 5 cut(s) 248, 734, 1212, 2301, 2486
AfiI CCNNNNNNNGG 9 cut(s) 155, 318, 1542, 1627, 1693, 1981, 2564, 3025, 3329
AflII CTTAAG 3 cut(s) 983, 2782, 3203
AflIII ACRYGT 3 cut(s) 531, 2420, 3128
AhlI ACTAGT 1 cut(s) 2006
AjnI CCWGG 6 cut(s) 971, 1686, 1778, 1849, 2844, 2878
AjuI GAANNNNNNNTTGG 4 cut(s) 2462, 2494, 2950, 2982
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 7 cut(s) 741, 1495, 1691, 1810, 2573, 2734, 2795
AlwI GGATC 3 cut(s) 488, 1522, 3308
AlwNI CAGNNNCTG 3 cut(s) 814, 1693, 2701
AoxI GGCC 6 cut(s) 153, 423, 969, 1572, 2041, 2368
ApeKI GCWGC 4 cut(s) 120, 2695, 2764, 3293
ApoI RAATTY 6 cut(s) 32, 953, 1055, 2268, 2942, 3512
AseI ATTAAT 2 cut(s) 72, 609
Asp700I GAANNNNTTC 3 cut(s) 533, 659, 2607
AspLEI GCGC 1 cut(s) 1010
AspS9I GGNCC 3 cut(s) 424, 633, 3028
AsuHPI GGTGA 5 cut(s) 48, 614, 2666, 2842, 3182
AsuII TTCGAA 2 cut(s) 1603, 3055
AvaII GGWCC 2 cut(s) 633, 3028
BalI TGGCCA 2 cut(s) 971, 1574
BanI GGYRCC 5 cut(s) 596, 1007, 1782, 2543, 2684
BarI GAAGNNNNNNTAC 6 cut(s) 230, 262, 1461, 1493, 2643, 2675
BbsI GAAGAC 3 cut(s) 1391, 1479, 2466
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 4 cut(s) 132, 2707, 2776, 3305
BccI CCATC 3 cut(s) 956, 961, 2022
BciT130I CCWGG 6 cut(s) 973, 1688, 1780, 1851, 2846, 2880
BclI TGATCA 1 cut(s) 1909
BcoDI GTCTC 7 cut(s) 741, 1495, 1691, 1810, 2573, 2734, 2795
BcuI ACTAGT 1 cut(s) 2006
BfmI CTRYAG 4 cut(s) 1128, 2493, 2817, 2981
BfoI RGCGCY 1 cut(s) 1011
BfrI CTTAAG 3 cut(s) 983, 2782, 3203
BfuAI ACCTGC 2 cut(s) 1219, 3219
BisI GCNGC 7 cut(s) 121, 473, 795, 842, 2696, 2765, 3294
BlsI GCNGC 7 cut(s) 122, 474, 796, 843, 2697, 2766, 3295
Bme1390I CCNGG 6 cut(s) 973, 1688, 1780, 1851, 2846, 2880
Bme18I GGWCC 2 cut(s) 633, 3028
BmgT120I GGNCC 3 cut(s) 424, 633, 3028
BmiI GGNNCC 5 cut(s) 598, 1009, 1784, 2545, 2686
BmrFI CCNGG 6 cut(s) 973, 1688, 1780, 1851, 2846, 2880
BmsI GCATC 8 cut(s) 502, 789, 1023, 1331, 1400, 1585, 2822, 2920
BpiI GAAGAC 3 cut(s) 1391, 1479, 2466
BplI GAGNNNNNCTC 2 cut(s) 3179, 3211
BpmI CTGGAG 5 cut(s) 641, 765, 1715, 1762, 2819
Bpu10I CCTNAGC 1 cut(s) 3289
Bpu14I TTCGAA 2 cut(s) 1603, 3055
BpuEI CTTGAG 3 cut(s) 1345, 1817, 2118
BsaAI YACGTR 1 cut(s) 736
BsaHI GRCGYC 1 cut(s) 1008
BsaI GGTCTC 3 cut(s) 741, 1495, 2573
BsaWI WCCGGW 2 cut(s) 496, 1153
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 9 cut(s) 155, 318, 1542, 1627, 1693, 1981, 2564, 3025, 3329
Bse118I RCCGGY 2 cut(s) 599, 3030
Bse3DI GCAATG 4 cut(s) 93, 531, 2178, 3489
BseBI CCWGG 6 cut(s) 973, 1688, 1780, 1851, 2846, 2880
BseLI CCNNNNNNNGG 9 cut(s) 155, 318, 1542, 1627, 1693, 1981, 2564, 3025, 3329
BseMI GCAATG 4 cut(s) 93, 531, 2178, 3489
BseMII CTCAG 9 cut(s) 1192, 1221, 1397, 1467, 1497, 2198, 2784, 3210, 3319
BseXI GCAGC 4 cut(s) 132, 2707, 2776, 3305
BseYI CCCAGC 1 cut(s) 1959
BsgI GTGCAG 1 cut(s) 3197
Bsh1236I CGCG 1 cut(s) 797
BshFI GGCC 6 cut(s) 155, 425, 971, 1574, 2043, 2370
BshNI GGYRCC 5 cut(s) 596, 1007, 1782, 2543, 2684
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 6 cut(s) 156, 497, 600, 1154, 2371, 3031
BsiWI CGTACG 1 cut(s) 2484
BslI CCNNNNNNNGG 9 cut(s) 155, 318, 1542, 1627, 1693, 1981, 2564, 3025, 3329
BsmAI GTCTC 7 cut(s) 741, 1495, 1691, 1810, 2573, 2734, 2795
BsmBI CGTCTC 3 cut(s) 1691, 2734, 2795
BsmI GAATGC 4 cut(s) 768, 1920, 2607, 3071
BsnI GGCC 6 cut(s) 155, 425, 971, 1574, 2043, 2370
Bso31I GGTCTC 3 cut(s) 741, 1495, 2573
Bsp119I TTCGAA 2 cut(s) 1603, 3055
Bsp1286I GDGCHC 1 cut(s) 286
Bsp1407I TGTACA 1 cut(s) 2299
Bsp143I GATC 8 cut(s) 493, 639, 1333, 1514, 1909, 2314, 2446, 3313
Bsp19I CCATGG 2 cut(s) 150, 2153
BspANI GGCC 6 cut(s) 155, 425, 971, 1574, 2043, 2370
BspCNI CTCAG 9 cut(s) 1191, 1220, 1398, 1466, 1498, 2199, 2785, 3209, 3318
BspFNI CGCG 1 cut(s) 797
BspHI TCATGA 2 cut(s) 775, 2058
BspLI GGNNCC 5 cut(s) 598, 1009, 1784, 2545, 2686
BspMAI CTGCAG 1 cut(s) 2985
BspMI ACCTGC 2 cut(s) 1219, 3219
BspPI GGATC 3 cut(s) 488, 1522, 3308
BspQI GCTCTTC 1 cut(s) 291
BspT104I TTCGAA 2 cut(s) 1603, 3055
BspT107I GGYRCC 5 cut(s) 596, 1007, 1782, 2543, 2684
BspTI CTTAAG 3 cut(s) 983, 2782, 3203
BspTNI GGTCTC 3 cut(s) 741, 1495, 2573
BsrDI GCAATG 4 cut(s) 93, 531, 2178, 3489
BsrFI RCCGGY 2 cut(s) 599, 3030
BsrGI TGTACA 1 cut(s) 2299
BssAI RCCGGY 2 cut(s) 599, 3030
BssMI GATC 8 cut(s) 493, 639, 1333, 1514, 1909, 2314, 2446, 3313
BssNAI GTATAC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 1008
BssT1I CCWWGG 5 cut(s) 150, 184, 420, 2153, 2749
Bst1107I GTATAC 1 cut(s) 106
Bst2UI CCWGG 6 cut(s) 973, 1688, 1780, 1851, 2846, 2880
Bst4CI ACNGT 9 cut(s) 103, 352, 403, 1647, 1894, 2065, 2079, 2126, 3138
Bst6I CTCTTC 6 cut(s) 291, 383, 446, 1947, 2178, 2240
BstACI GRCGYC 1 cut(s) 1008
BstAFI CTTAAG 3 cut(s) 983, 2782, 3203
BstAPI GCANNNNNTGC 1 cut(s) 3396
BstAUI TGTACA 1 cut(s) 2299
BstBAI YACGTR 1 cut(s) 736
BstBI TTCGAA 2 cut(s) 1603, 3055
BstC8I GCNNGC 7 cut(s) 214, 819, 1012, 1107, 1301, 2429, 2769
BstDSI CCRYGG 2 cut(s) 150, 2153
BstEII GGTNACC 1 cut(s) 307
BstENI CCTNNNNNAGG 1 cut(s) 3023
BstFNI CGCG 1 cut(s) 797
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 8 cut(s) 496, 642, 1336, 1517, 1912, 2317, 2449, 3316
BstMAI GTCTC 7 cut(s) 741, 1495, 1691, 1810, 2573, 2734, 2795
BstMBI GATC 8 cut(s) 493, 639, 1333, 1514, 1909, 2314, 2446, 3313
BstMWI GCNNNNNNNGC 9 cut(s) 10, 413, 422, 521, 808, 1328, 1699, 3343, 3396
BstNI CCWGG 6 cut(s) 973, 1688, 1780, 1851, 2846, 2880
BstNSI RCATGY 8 cut(s) 535, 821, 1109, 1484, 2424, 2431, 2923, 3132
BstPI GGTNACC 1 cut(s) 307
BstSCI CCNGG 6 cut(s) 971, 1686, 1778, 1849, 2844, 2878
BstSFI CTRYAG 4 cut(s) 1128, 2493, 2817, 2981
BstUI CGCG 1 cut(s) 797
BstV1I GCAGC 4 cut(s) 132, 2707, 2776, 3305
BstV2I GAAGAC 3 cut(s) 1391, 1479, 2466
BstX2I RGATCY 2 cut(s) 1514, 3313
BstYI RGATCY 2 cut(s) 1514, 3313
BstZ17I GTATAC 1 cut(s) 106
BsuRI GGCC 6 cut(s) 155, 425, 971, 1574, 2043, 2370
BtgI CCRYGG 2 cut(s) 150, 2153
BtgZI GCGATG 1 cut(s) 812
BtsIMutI CAGTG 5 cut(s) 99, 617, 670, 1484, 1568
BveI ACCTGC 2 cut(s) 1219, 3219
Cac8I GCNNGC 7 cut(s) 214, 819, 1012, 1107, 1301, 2429, 2769
CaiI CAGNNNCTG 3 cut(s) 814, 1693, 2701
CciI TCATGA 2 cut(s) 775, 2058
CfoI GCGC 1 cut(s) 1010
Cfr10I RCCGGY 2 cut(s) 599, 3030
Cfr13I GGNCC 3 cut(s) 424, 633, 3028
CseI GACGC 3 cut(s) 1708, 2679, 2716
CsiI ACCWGGT 1 cut(s) 1686
Csp6I GTAC 5 cut(s) 247, 733, 1211, 2300, 2485
CviQI GTAC 5 cut(s) 247, 733, 1211, 2300, 2485
DinI GGCGCC 1 cut(s) 1009
DpnI GATC 8 cut(s) 495, 641, 1335, 1516, 1911, 2316, 2448, 3315
DpnII GATC 8 cut(s) 493, 639, 1333, 1514, 1909, 2314, 2446, 3313
DraI TTTAAA 3 cut(s) 1615, 3144, 3555
EaeI YGGCCR 4 cut(s) 153, 969, 1572, 2368
Eam1104I CTCTTC 6 cut(s) 291, 383, 446, 1947, 2178, 2240
EarI CTCTTC 6 cut(s) 291, 383, 446, 1947, 2178, 2240
EciI GGCGGA 2 cut(s) 781, 991
Eco130I CCWWGG 5 cut(s) 150, 184, 420, 2153, 2749
Eco147I AGGCCT 1 cut(s) 2043
Eco31I GGTCTC 3 cut(s) 741, 1495, 2573
Eco47I GGWCC 2 cut(s) 633, 3028
Eco57I CTGAAG 6 cut(s) 1010, 1284, 2016, 2918, 3383, 3548
Eco91I GGTNACC 1 cut(s) 307
EcoNI CCTNNNNNAGG 1 cut(s) 3023
EcoO65I GGTNACC 1 cut(s) 307
EcoRI GAATTC 2 cut(s) 953, 2268
EcoRII CCWGG 6 cut(s) 971, 1686, 1778, 1849, 2844, 2878
EcoT14I CCWWGG 5 cut(s) 150, 184, 420, 2153, 2749
EcoT22I ATGCAT 1 cut(s) 804
EgeI GGCGCC 1 cut(s) 1009
EheI GGCGCC 1 cut(s) 1009
ErhI CCWWGG 5 cut(s) 150, 184, 420, 2153, 2749
Esp3I CGTCTC 3 cut(s) 1691, 2734, 2795
FalI AAGNNNNNCTT 2 cut(s) 1279, 1311
FauI CCCGC 2 cut(s) 1019, 1672
FauNDI CATATG 1 cut(s) 2199
FbaI TGATCA 1 cut(s) 1909
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 7 cut(s) 121, 473, 795, 842, 2696, 2765, 3294
Fsp4HI GCNGC 7 cut(s) 121, 473, 795, 842, 2696, 2765, 3294
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 7 cut(s) 121, 473, 795, 842, 2696, 2765, 3294
GsaI CCCAGC 1 cut(s) 1963
GsuI CTGGAG 5 cut(s) 641, 765, 1715, 1762, 2819
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 6 cut(s) 155, 425, 971, 1574, 2043, 2370
HapII CCGG 6 cut(s) 156, 497, 600, 1154, 2371, 3031
HgaI GACGC 3 cut(s) 1708, 2679, 2716
HhaI GCGC 1 cut(s) 1010
Hin1I GRCGYC 1 cut(s) 1008
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HincII GTYRAC 1 cut(s) 2122
HindII GTYRAC 1 cut(s) 2122
HindIII AAGCTT 4 cut(s) 433, 980, 3236, 3335
HpaII CCGG 6 cut(s) 156, 497, 600, 1154, 2371, 3031
HphI GGTGA 5 cut(s) 48, 614, 2666, 2842, 3182
Hpy166II GTNNAC 6 cut(s) 106, 2122, 2869, 3134, 3173, 3580
Hpy8I GTNNAC 6 cut(s) 106, 2122, 2869, 3134, 3173, 3580
Hpy99I CGWCG 2 cut(s) 212, 1626
HpyCH4III ACNGT 9 cut(s) 103, 352, 403, 1647, 1894, 2065, 2079, 2126, 3138
HpyCH4IV ACGT 3 cut(s) 195, 483, 735
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 413, 422, 521, 808, 1328, 1699, 3343, 3396
HpySE526I ACGT 3 cut(s) 195, 483, 735
Hsp92I GRCGYC 1 cut(s) 1008
HspAI GCGC 1 cut(s) 1008
KasI GGCGCC 1 cut(s) 1007
Ksp22I TGATCA 1 cut(s) 1909
Kzo9I GATC 8 cut(s) 493, 639, 1333, 1514, 1909, 2314, 2446, 3313
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 4 cut(s) 622, 1225, 1963, 3479
Lsp1109I GCAGC 4 cut(s) 132, 2707, 2776, 3305
LweI GCATC 8 cut(s) 502, 789, 1023, 1331, 1400, 1585, 2822, 2920
MabI ACCWGGT 1 cut(s) 1686
MaeII ACGT 3 cut(s) 195, 483, 735
MaeIII GTNAC 4 cut(s) 307, 346, 602, 2092
MalI GATC 8 cut(s) 495, 641, 1335, 1516, 1911, 2316, 2448, 3315
MboI GATC 8 cut(s) 493, 639, 1333, 1514, 1909, 2314, 2446, 3313
MfeI CAATTG 5 cut(s) 891, 1340, 1428, 1724, 2735
MflI RGATCY 2 cut(s) 1514, 3313
MhlI GDGCHC 1 cut(s) 286
MlsI TGGCCA 2 cut(s) 971, 1574
MluNI TGGCCA 2 cut(s) 971, 1574
Mly113I GGCGCC 1 cut(s) 1008
MlyI GAGTC 3 cut(s) 47, 689, 3255
MmeI TCCRAC 3 cut(s) 1148, 1203, 3084
Mox20I TGGCCA 2 cut(s) 971, 1574
Mph1103I ATGCAT 1 cut(s) 804
MroXI GAANNNNTTC 3 cut(s) 533, 659, 2607
MscI TGGCCA 2 cut(s) 971, 1574
MslI CAYNNNNRTG 2 cut(s) 2862, 2969
Msp20I TGGCCA 2 cut(s) 971, 1574
MspA1I CMGCKG 3 cut(s) 841, 2767, 3079
MspCI CTTAAG 3 cut(s) 983, 2782, 3203
MspI CCGG 6 cut(s) 156, 497, 600, 1154, 2371, 3031
MspR9I CCNGG 6 cut(s) 973, 1688, 1780, 1851, 2846, 2880
MunI CAATTG 5 cut(s) 891, 1340, 1428, 1724, 2735
Mva1269I GAATGC 4 cut(s) 768, 1920, 2607, 3071
MvaI CCWGG 6 cut(s) 973, 1688, 1780, 1851, 2846, 2880
MvnI CGCG 1 cut(s) 797
MwoI GCNNNNNNNGC 9 cut(s) 10, 413, 422, 521, 808, 1328, 1699, 3343, 3396
NarI GGCGCC 1 cut(s) 1008
NcoI CCATGG 2 cut(s) 150, 2153
NdeI CATATG 1 cut(s) 2199
NdeII GATC 8 cut(s) 493, 639, 1333, 1514, 1909, 2314, 2446, 3313
NlaIV GGNNCC 5 cut(s) 598, 1009, 1784, 2545, 2686
NmuCI GTSAC 3 cut(s) 346, 602, 2092
NsiI ATGCAT 1 cut(s) 804
NspI RCATGY 8 cut(s) 535, 821, 1109, 1484, 2424, 2431, 2923, 3132
NspV TTCGAA 2 cut(s) 1603, 3055
PaeI GCATGC 3 cut(s) 821, 1109, 2431
PagI TCATGA 2 cut(s) 775, 2058
PasI CCCWGGG 1 cut(s) 1850
PceI AGGCCT 1 cut(s) 2043
PciI ACATGT 3 cut(s) 531, 2420, 3128
PciSI GCTCTTC 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 4 cut(s) 768, 1920, 2607, 3071
PdmI GAANNNNTTC 3 cut(s) 533, 659, 2607
Pfl23II CGTACG 1 cut(s) 2484
PflFI GACNNNGTC 1 cut(s) 1802
PflMI CCANNNNNTGG 2 cut(s) 1693, 1981
PkrI GCNGC 7 cut(s) 122, 474, 796, 843, 2697, 2766, 3295
PleI GAGTC 3 cut(s) 47, 688, 3255
PluTI GGCGCC 1 cut(s) 1011
PpsI GAGTC 3 cut(s) 47, 688, 3255
Ppu21I YACGTR 1 cut(s) 736
PscI ACATGT 3 cut(s) 531, 2420, 3128
PshBI ATTAAT 2 cut(s) 72, 609
Psp6I CCWGG 6 cut(s) 971, 1686, 1778, 1849, 2844, 2878
PspEI GGTNACC 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 1959
PspGI CCWGG 6 cut(s) 971, 1686, 1778, 1849, 2844, 2878
PspLI CGTACG 1 cut(s) 2484
PspN4I GGNNCC 5 cut(s) 598, 1009, 1784, 2545, 2686
PspPI GGNCC 3 cut(s) 424, 633, 3028
PstI CTGCAG 1 cut(s) 2985
PstNI CAGNNNCTG 3 cut(s) 814, 1693, 2701
PsuI RGATCY 2 cut(s) 1514, 3313
PsyI GACNNNGTC 1 cut(s) 1802
PvuII CAGCTG 2 cut(s) 2767, 3079
RsaI GTAC 5 cut(s) 248, 734, 1212, 2301, 2486
RsaNI GTAC 5 cut(s) 247, 733, 1211, 2300, 2485
RseI CAYNNNNRTG 2 cut(s) 2862, 2969
SapI GCTCTTC 1 cut(s) 291
SatI GCNGC 7 cut(s) 121, 473, 795, 842, 2696, 2765, 3294
Sau3AI GATC 8 cut(s) 493, 639, 1333, 1514, 1909, 2314, 2446, 3313
Sau96I GGNCC 3 cut(s) 424, 633, 3028
SchI GAGTC 3 cut(s) 47, 689, 3255
ScrFI CCNGG 6 cut(s) 973, 1688, 1780, 1851, 2846, 2880
SduI GDGCHC 1 cut(s) 286
SexAI ACCWGGT 1 cut(s) 1686
SfaNI GCATC 8 cut(s) 502, 789, 1023, 1331, 1400, 1585, 2822, 2920
SfcI CTRYAG 4 cut(s) 1128, 2493, 2817, 2981
SfoI GGCGCC 1 cut(s) 1009
SfuI TTCGAA 2 cut(s) 1603, 3055
SinI GGWCC 2 cut(s) 633, 3028
SmiMI CAYNNNNRTG 2 cut(s) 2862, 2969
SmlI CTYRAG 6 cut(s) 983, 1360, 1832, 2133, 2782, 3203
SmoI CTYRAG 6 cut(s) 983, 1360, 1832, 2133, 2782, 3203
SpeI ACTAGT 1 cut(s) 2006
SphI GCATGC 3 cut(s) 821, 1109, 2431
SseBI AGGCCT 1 cut(s) 2043
SspDI GGCGCC 1 cut(s) 1007
SspI AATATT 1 cut(s) 556
StuI AGGCCT 1 cut(s) 2043
StyD4I CCNGG 6 cut(s) 971, 1686, 1778, 1849, 2844, 2878
StyI CCWWGG 5 cut(s) 150, 184, 420, 2153, 2749
TaaI ACNGT 9 cut(s) 103, 352, 403, 1647, 1894, 2065, 2079, 2126, 3138
TaiI ACGT 3 cut(s) 198, 486, 738
TaqI TCGA 7 cut(s) 165, 236, 537, 1603, 2935, 3055, 3259
TaqII GACCGA 1 cut(s) 673
TatI WGTACW 3 cut(s) 246, 1210, 2299
TauI GCSGC 3 cut(s) 475, 797, 844
TscAI CASTG 5 cut(s) 106, 624, 670, 1491, 1575
TseFI GTSAC 3 cut(s) 346, 602, 2092
TseI GCWGC 4 cut(s) 120, 2695, 2764, 3293
Tsp45I GTSAC 3 cut(s) 346, 602, 2092
TspGWI ACGGA 2 cut(s) 1610, 2803
TspRI CASTG 5 cut(s) 106, 624, 670, 1491, 1575
Tth111I GACNNNGTC 1 cut(s) 1802
Van91I CCANNNNNTGG 2 cut(s) 1693, 1981
Vha464I CTTAAG 3 cut(s) 983, 2782, 3203
VpaK11BI GGWCC 2 cut(s) 633, 3028
VspI ATTAAT 2 cut(s) 72, 609
XagI CCTNNNNNAGG 1 cut(s) 3023
XapI RAATTY 6 cut(s) 32, 953, 1055, 2268, 2942, 3512
XbaI TCTAGA 3 cut(s) 2329, 2707, 3445
XceI RCATGY 8 cut(s) 535, 821, 1109, 1484, 2424, 2431, 2923, 3132
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 3 cut(s) 533, 659, 2607
Zsp2I ATGCAT 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.