Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Reverse (-)

58834450 .. 58835136

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGGACTCTGACTCAGAGTATATGTCTGAGATTCAACGAATCACAGATGCTGTCATTCTTCTTCAACAATGTGTGAAAGTATATTCCATTGAGGTCAGGAAGGAGTCATGCTCGGTCGTTGGGTTTGACGAAGACATATATAAACTGGTCCAGCAATTGACAGCTAACAGTGAACTGCATATCATTTCCATTGGGGGAATGAAGGGCATTGGTAAGACAATTCTGGCGAAGAAAGTTTATCACCATGGTACCATTGCAAGCCATTTTAAAGTCCCGCGATGGGTATCTATACCTCACATGCATAATGAAAATGCACTTTTGAGAAGTGTTGGAAGCCAGATTGTGAAGAGCGAAGAGAAATGGAGTGCAAAAGATTTCTGGATCAAGAACGTGCATGATTTCTTGAAGGAGAAGCGATACCTTTTAGTTTTGGACAATGTCCCATCAAAGGAAGTCTTGGATTCTCTTAAAGCAGCATTATTTCCAGAAATGATGAATGGGAGTAAGGTTGTGCTAACCACAAACAGCAAGGCCCTGGCTTTACATGTTGATACTGAGTTACTGACCAAAGTAGTACTCAATATCCAATTCGGCTACGAACCCAAGAAGAGAGCTGGGAATTTTTCACCCAGATGGTGCACATTTCTTCTGATCAAGAAGAAACCAATGCAAAGAAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

228

Amino Acids

26.03

Weight (kDa)

9.21

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	45 - 186	2.9e-27	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	1 cut(s)	280
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	2 cut(s)	253, 579
AfiI	CCNNNNNNNGG	2 cut(s)	283, 451
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	3 cut(s)	38, 68, 409
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	2 cut(s)	167, 617
AluI	AGCT	2 cut(s)	167, 617
Alw21I	GWGCWC	1 cut(s)	644
Alw44I	GTGCAC	1 cut(s)	640
AlwI	GGATC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	534
ApaLI	GTGCAC	1 cut(s)	640
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	622
Asp718I	GGTACC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	151, 535
AsuHPI	GGTGA	2 cut(s)	236, 621
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	644
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanI	GGYRCC	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	3 cut(s)	276, 454, 630
BciT130I	CCWGG	1 cut(s)	539
BclI	TGATCA	1 cut(s)	654
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
BmcAI	AGTACT	1 cut(s)	579
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	151, 535
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BsaBI	GATNNNNATC	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	247, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 451
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	247, 537
BseJI	GATNNNNATC	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	283, 451
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	21, 30, 549
BseNI	ACTGG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	1 cut(s)	488
BseYI	CCCAGC	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	536
BshNI	GGYRCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	644
BslFI	GGGAC	2 cut(s)	260, 428
BslI	CCNNNNNNNGG	2 cut(s)	283, 451
BsmFI	GGGAC	2 cut(s)	260, 428
BsnI	GGCC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	2 cut(s)	384, 654
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	3 cut(s)	22, 29, 550
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	247, 537
BssMI	GATC	2 cut(s)	384, 654
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	3 cut(s)	344, 351, 605
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	16, 30, 558
BstDSI	CCRYGG	1 cut(s)	247
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	387, 657
BstMBI	GATC	2 cut(s)	384, 654
BstMCI	CGRYCG	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	2 cut(s)	304, 551
BstSCI	CCNGG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	644
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	488
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	151, 535
Csp6I	GTAC	2 cut(s)	252, 578
CviAII	CATG	5 cut(s)	111, 248, 301, 398, 548
CviJI	RGCY	7 cut(s)	167, 264, 339, 536, 542, 597, 617
CviKI_1	RGCY	7 cut(s)	167, 264, 339, 536, 542, 597, 617
CviQI	GTAC	2 cut(s)	252, 578
DdeI	CTNAG	3 cut(s)	16, 30, 558
DpnI	GATC	2 cut(s)	386, 656
DpnII	GATC	2 cut(s)	384, 654
DraI	TTTAAA	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	344, 351, 605
EarI	CTCTTC	3 cut(s)	344, 351, 605
Eco130I	CCWWGG	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	5 cut(s)	114, 251, 304, 401, 551
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	2 cut(s)	260, 428
FatI	CATG	5 cut(s)	110, 247, 300, 397, 547
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	477
GluI	GCNGC	1 cut(s)	477
GsaI	CCCAGC	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	536
Hin1II	CATG	5 cut(s)	114, 251, 304, 401, 551
HinfI	GANTC	6 cut(s)	8, 14, 34, 42, 107, 464
HphI	GGTGA	2 cut(s)	236, 621
Hpy166II	GTNNAC	2 cut(s)	176, 642
Hpy188I	TCNGA	4 cut(s)	13, 19, 31, 654
Hpy188III	TCNNGA	6 cut(s)	100, 382, 388, 406, 488, 658
Hpy8I	GTNNAC	2 cut(s)	176, 642
HpyAV	CCTTC	3 cut(s)	97, 199, 403
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	8 cut(s)	181, 260, 304, 317, 371, 397, 642, 673
HpyF3I	CTNAG	3 cut(s)	16, 30, 558
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	5 cut(s)	114, 251, 304, 401, 551
KpnI	GGTACC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	2 cut(s)	384, 654
LguI	GCTCTTC	1 cut(s)	344
Lsp1109I	GCAGC	1 cut(s)	488
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	561
MalI	GATC	2 cut(s)	386, 656
MboI	GATC	2 cut(s)	384, 654
MboII	GAAGA	9 cut(s)	53, 56, 146, 244, 361, 368, 622, 641, 673
MfeI	CAATTG	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	4 cut(s)	158, 222, 590, 622
MlyI	GAGTC	3 cut(s)	2, 8, 116
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	2 cut(s)	88, 306
Mph1103I	ATGCAT	1 cut(s)	306
MseI	TTAA	2 cut(s)	270, 471
MslI	CAYNNNNRTG	1 cut(s)	634
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	2 cut(s)	384, 654
NlaIII	CATG	5 cut(s)	114, 251, 304, 401, 551
NlaIV	GGNNCC	1 cut(s)	253
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	2 cut(s)	304, 551
PciI	ACATGT	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	34, 42, 464
PflFI	GACNNNGTC	1 cut(s)	440
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	3 cut(s)	2, 8, 115
PpsI	GAGTC	3 cut(s)	2, 8, 115
PscI	ACATGT	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	151, 535
PstNI	CAGNNNCTG	1 cut(s)	53
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	2 cut(s)	253, 579
RsaNI	GTAC	2 cut(s)	252, 578
RseI	CAYNNNNRTG	1 cut(s)	634
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	270, 471
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	2 cut(s)	384, 654
Sau96I	GGNCC	2 cut(s)	151, 535
ScaI	AGTACT	1 cut(s)	579
SchI	GAGTC	3 cut(s)	2, 8, 116
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	644
SetI	ASST	7 cut(s)	99, 169, 298, 396, 426, 513, 619
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	634
Sse9I	AATT	4 cut(s)	158, 222, 590, 622
SsiI	CCGC	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	396
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	4 cut(s)	158, 222, 590, 622
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	3 cut(s)	34, 42, 464
Tru1I	TTAA	2 cut(s)	270, 471
Tru9I	TTAA	2 cut(s)	270, 471
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	3 cut(s)	218, 324, 512
TspRI	CASTG	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	440
VneI	GTGCAC	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	2 cut(s)	304, 551
ZrmI	AGTACT	1 cut(s)	579
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.