Rw2G036470

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
60049288 .. 60052863
3576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036470.1

Sequence Viewer

Length: 3576 bp
ATGCCATTAGTGCTTACAGATTCAATTTCTGCATCTAATCCAGTCTCACCACATTCTTGCATTAATCCAATTTTTCACATCCACATTGCCACTGTATACGATTCAAGTTGCAGCTACATTTTGGATGAGAAGAAGCACCCCATGGCCGGAGTATTCGACCTCTGTTGCATTTTCCTTGGGTTTTACGTCCTTTGTGTCGTCGCAAGCGAACTTGCTTACAGATACTCGAAGGGGAAGTACAAGTGGATTAAAAGAGAATTGAAGTTTTTGAGTGCTCTTCTTAAAGATTTTGACGAGGTTACCATGTCAGGGAATCAAATAACACAGGAAATTGGAGTGACTGTGCAAGTAATGAAGGAGAGGGAGGAAAACTGGAAGAAGAGAGCAAGAACTGTTGCTGATGAAGCAACCTTGGCCCTTCAAAGCTTTGCAAAACTGACGAAGAGAAGAAGTTATCACAAGCGGCTTCTTTACGTCATTCTTGATCCTGTAGCGGTGGTTGATGCTGTCCTTGCAATGAACATGTTCGAGCAGAGGATAAATAATATGGTTGGGATTAATCGGAAAGGAGTGAAGCAGACCACAGGTGCCGGTGACATTAATGTATCACTGGAGCAGTCAAGGTCCAAGATCAGAAGCCTTATGAATAGATTCAGTGTTGATGAGATTGAGTCGGTCATGTCCAGACCACCAAGAGCTGATGAATTGACTTTATATCCAAAGTACGTGATGACTGGAGACCTAGATTTGTTGTGTGGCATTCATCATGAGCAAATAAAGTCCGCCGCGATGCATTTACAGCTACTGCATGCTTTCATGGAAGATTTACAGCGGCTCAAAGTGGTGGAAAGTGCTATGGAAAGGTGCTGGATGACAGAAGCAATTGAAACCATTGAGGAAGCAAAGGCTGTCATCAACAGAAACCAGAGAATGTGGCTTTCAGAATTCAATGATGGGATGGCCAGGCGGAAGCTTAAGAAGGGTATAATGCACATTGGCGCCCGCATCTCTGACCTTCAGGAAACAAAAGAAAAATATGGTATCAAATTCATCCGGCGACAATCATCAAAATCTGCCGACAGGTTTCCTCAACAGCATGCCTCTCAATACCTTCCAACTACAGATGATACTTGTTTGTCATCTCCGGTCAGGAACATTCGTAATTGGCTCAGTCAAGTGCAAGAAACAAGCACCAACTCAGTACAAGATGAGTTGGAGCAGGTTCATAAACTCTTGCAACATACAAAAGGAACTGAAGATTATGGTGCTGTTAATTTAAGAAATACTTGCTGGGAGCTACTGAAAAAAAAAGCATCCGAAGCAGATCAGCAATTGATGTCAAACATTCCCTCAAGAATGATATTAACCCGAATTAAGAACACTCTTAGTCTTCTTCTGAGATGCCTACAAGTATATTCAATTGAGGTAAGGGTGGATTCATGCTCAGTAGTTGGTTTGGAAGAAGACATACATGCACTGGTCTCAACTCTCACTACTGAGAGTGGATCTGCTAGTTCTATCATATCCATTGTGGGGATGAAAGGCATCGGTAAGACCACACTGGCCAAGAAAGTATATGACCATGATGCCATTCGAAGCCATTTTAAAGTCCGTCGTTGGGTATCTATACCTCAACAGTATGATGATGAAAACGCACTTTTCAGTAGTGCGGGAAACCAGGTGCTGGAGACGCAAAATAAGGGGTATGAAAAACAATTTTTGATGAAATCAATGCAGGATTTCTTCAAGCAACTTGGTAAGAAAAACTCCAGGTGCCTCTTAATTTTTGACAATGTCTCATCAAACAAAGAAATGTATGCTCTCAAGACAGCATTTTCCCCAGGGAGAAATGGGAGTATTGTTCTAATCACACGCAACAAGACCGTTGGTTCAAATGCTGATCAAAATAGCATTCCCCACCAAGTTCGGCTACGAACTAAAGAAGAGAGCTGGGAGCTTTTTAGCCAAATGGTGGAGTTCTCTGCTGAAGAAATGACTAGTGCAAAGGAAGTTGTAGGATGGAAACTTGGAGGCCTCCCACTTGACATCATGACTGTTGGCTTTCTACTGTGGGGGAAGAAAGTCACATCCGAGGAAGTTTTTAGGGCGGTTGACCGTATCACTCAAGGACAGAACCAAAGTCCATGGTCAGAGAATCTGGCAATGATTGAAGAAGAGTTGCAGTTCCATATGATTCTGAGAAAATGTTTTTCTTATTTCAAACTCTTCCCTAGAGAATCTGAAATCCCCATTAGAAGAATTCTGGCTTCCTTAGTTGCACAAGGGTTTGTACAACTAAGCAGAGATCAGAAAATAAATCTAGAAAGTGTAGCATTGGAGTATTTATCAGAGTTGATTGGCCGGAGTATGATTCAAGTAGTTCAAAGGAAGCCTAATGGAATGTTCAAGACATGTCGCATGCCTCCTGCTGTGCATGATCTCTTGTTTGAAGACAAAGCCAAACAATCATTCTCATACGCAACTACAGGTTTTGAAGCGCAACTTGCCTTTCAGTTTGATGATAATGGTACTGGTGCCAGTTTCCTTCCCATTTATGGTCTCAACACAAGTTTGCCAAATGCTCTGCGGAAAGAAAGAATTCTAGTTTTTGAGAATGGAGAAGGAAACAAACCAAGAATGGAAGGTGAATTTCTTGGCAGACGCATTAGGGCTGGTGCCTTCTCGCAGCTACTGGTTCTAGACTTTGAATGTGTAAGCGTCTCTCAATTGCCAACAATCCTTGGAAAACTAAAGCAGCTGGCATATCTTGGCTTAAGACGGACTGAGCTGGAGACGATTCCAGCATCTATAGGGAACTTGGTGAATCTTCAAACCCTGGATTTGAAGCATACTCATGTTCACACTCTCCCTGGTTCAATTTGGAAACTGAAGAATCTTCGGCATCTATACATGCACCAGAGATGTCGAATCAAATTTATGGCTTTACCAACAGCCATTTCAATGAGGAATCTGCAGACACTATCAGGTATATTCTTGGGTAAGATTAACCTTGTAAAGGACCGGCTTGACAAGTTGATCCACCTTCGAAAACTGGAATTGGCATTCCAGCTGAAACCATCAGAGCAAAAGGTGTTGGAAAAGTGGATTGTGAAGCTAACATGTTTACAGTCTTTAAAGTTGAAATCATTTAGTGCAAATGGTGAACTTCCAAAGCTAGAGCGTATCTCAGACCTTAAGAACCTGCACAGCCTATATTTATTTGGAAAGCTTGAATACTCATTCATCACTCGACTCCCTGAAAGCCTCACTCATCTTACCTTAGCAGCTTCTAGCCTCAGAAAAGATCCAATGCCAGAGTTAGGGAAGCTTCCAAAGCTGAAATCACTTTCTCTGAAGTCTGGTTCTTATCAAGGAACAGGCATGGTATGCTCTACTGATTATTTTCCCCTGCTTTTTGTTCTCAAACTTTGGAATCTAGATACTCTGGGGAAATTGGATGTGCATGAAGGGGCAATGCAAAATCTTAGGGAGTTTGAGATTAAATTTTGCAACAACTTTACAAGCACTACTGGATTGGAACATTTAAAGAACCTTCAGAAATATAGAGTGAACTGA

Protein Analysis

1191

Amino Acids

135.72

Weight (kDa)

9.28

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 487 - 658 1.9e-27 NB-ARC domain
WHD_DRP PF23559 742 - 814 7.4e-12 Disease resistance protein Winged helix domain
LRR_14 PF23598 893 - 1190 1.2e-39 Leucine-rich repeat region
LRR_8 PF13855 919 - 972 1.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1210, 3210
AccB1I GGYRCC 5 cut(s) 587, 998, 1773, 2534, 2675
AccB7I CCANNNNNTGG 2 cut(s) 1684, 1972
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 788
AclWI GGATC 4 cut(s) 479, 1513, 3031, 3299
AcoI YGGCCR 4 cut(s) 144, 960, 1563, 2359
AcsI RAATTY 7 cut(s) 944, 1046, 2259, 2598, 2648, 2933, 3503
AcuI CTGAAG 6 cut(s) 1001, 1275, 2007, 2909, 3374, 3539
AcyI GRCGYC 1 cut(s) 999
AfaI GTAC 5 cut(s) 239, 725, 1203, 2292, 2530
AfiI CCNNNNNNNGG 9 cut(s) 146, 309, 1533, 1618, 1684, 1972, 2555, 3016, 3320
AflII CTTAAG 3 cut(s) 974, 2773, 3194
AflIII ACRYGT 3 cut(s) 522, 2411, 3119
AhlI ACTAGT 1 cut(s) 1997
AjnI CCWGG 6 cut(s) 962, 1677, 1769, 1840, 2835, 2869
AjuI GAANNNNNNNTTGG 4 cut(s) 2453, 2485, 2941, 2973
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 8 cut(s) 49, 732, 1486, 1682, 1801, 2564, 2725, 2786
AlwI GGATC 4 cut(s) 479, 1513, 3031, 3299
AlwNI CAGNNNCTG 3 cut(s) 805, 1684, 2692
AoxI GGCC 6 cut(s) 144, 414, 960, 1563, 2032, 2359
ApeKI GCWGC 4 cut(s) 111, 2686, 2755, 3284
ApoI RAATTY 7 cut(s) 944, 1046, 2259, 2598, 2648, 2933, 3503
AseI ATTAAT 3 cut(s) 63, 558, 600
Asp700I GAANNNNTTC 3 cut(s) 524, 650, 2598
AspLEI GCGC 2 cut(s) 1001, 2500
AspS9I GGNCC 3 cut(s) 415, 624, 3019
AsuHPI GGTGA 5 cut(s) 39, 605, 2657, 2833, 3173
AsuII TTCGAA 2 cut(s) 1594, 3046
AvaII GGWCC 2 cut(s) 624, 3019
BalI TGGCCA 2 cut(s) 962, 1565
BanI GGYRCC 5 cut(s) 587, 998, 1773, 2534, 2675
BarI GAAGNNNNNNTAC 4 cut(s) 221, 253, 1452, 1484
BbsI GAAGAC 3 cut(s) 1382, 1470, 2457
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 4 cut(s) 123, 2698, 2767, 3296
BccI CCATC 4 cut(s) 947, 952, 2013, 3085
BciT130I CCWGG 6 cut(s) 964, 1679, 1771, 1842, 2837, 2871
BclI TGATCA 1 cut(s) 1900
BcoDI GTCTC 8 cut(s) 49, 732, 1486, 1682, 1801, 2564, 2725, 2786
BcuI ACTAGT 1 cut(s) 1997
BfmI CTRYAG 5 cut(s) 489, 1119, 2484, 2808, 2972
BfoI RGCGCY 1 cut(s) 1002
BfrI CTTAAG 3 cut(s) 974, 2773, 3194
BfuAI ACCTGC 2 cut(s) 1210, 3210
BisI GCNGC 7 cut(s) 112, 464, 786, 833, 2687, 2756, 3285
BlsI GCNGC 7 cut(s) 113, 465, 787, 834, 2688, 2757, 3286
Bme1390I CCNGG 6 cut(s) 964, 1679, 1771, 1842, 2837, 2871
Bme18I GGWCC 2 cut(s) 624, 3019
BmgT120I GGNCC 3 cut(s) 415, 624, 3019
BmiI GGNNCC 5 cut(s) 589, 1000, 1775, 2536, 2677
BmrFI CCNGG 6 cut(s) 964, 1679, 1771, 1842, 2837, 2871
BpiI GAAGAC 3 cut(s) 1382, 1470, 2457
BplI GAGNNNNNCTC 2 cut(s) 3170, 3202
BpmI CTGGAG 5 cut(s) 632, 756, 1706, 1753, 2810
Bpu10I CCTNAGC 1 cut(s) 3280
Bpu14I TTCGAA 2 cut(s) 1594, 3046
BpuEI CTTGAG 3 cut(s) 1336, 1808, 2109
BsaAI YACGTR 1 cut(s) 727
BsaHI GRCGYC 1 cut(s) 999
BsaI GGTCTC 3 cut(s) 732, 1486, 2564
BsaWI WCCGGW 1 cut(s) 1144
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 9 cut(s) 146, 309, 1533, 1618, 1684, 1972, 2555, 3016, 3320
Bse118I RCCGGY 2 cut(s) 590, 3021
Bse3DI GCAATG 4 cut(s) 84, 522, 2169, 3480
BseBI CCWGG 6 cut(s) 964, 1679, 1771, 1842, 2837, 2871
BseLI CCNNNNNNNGG 9 cut(s) 146, 309, 1533, 1618, 1684, 1972, 2555, 3016, 3320
BseMI GCAATG 4 cut(s) 84, 522, 2169, 3480
BseMII CTCAG 9 cut(s) 1183, 1212, 1388, 1458, 1488, 2189, 2775, 3201, 3310
BseXI GCAGC 4 cut(s) 123, 2698, 2767, 3296
BseYI CCCAGC 2 cut(s) 1290, 1950
BsgI GTGCAG 1 cut(s) 3188
Bsh1236I CGCG 1 cut(s) 788
BshFI GGCC 6 cut(s) 146, 416, 962, 1565, 2034, 2361
BshNI GGYRCC 5 cut(s) 587, 998, 1773, 2534, 2675
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 6 cut(s) 147, 591, 1054, 1145, 2362, 3022
BslI CCNNNNNNNGG 9 cut(s) 146, 309, 1533, 1618, 1684, 1972, 2555, 3016, 3320
BsmAI GTCTC 8 cut(s) 49, 732, 1486, 1682, 1801, 2564, 2725, 2786
BsmBI CGTCTC 3 cut(s) 1682, 2725, 2786
BsmI GAATGC 3 cut(s) 759, 1911, 3062
BsnI GGCC 6 cut(s) 146, 416, 962, 1565, 2034, 2361
Bso31I GGTCTC 3 cut(s) 732, 1486, 2564
Bsp119I TTCGAA 2 cut(s) 1594, 3046
Bsp1286I GDGCHC 1 cut(s) 277
Bsp1407I TGTACA 1 cut(s) 2290
Bsp143I GATC 9 cut(s) 484, 630, 1324, 1505, 1900, 2305, 2437, 3036, 3304
Bsp19I CCATGG 2 cut(s) 141, 2144
BspANI GGCC 6 cut(s) 146, 416, 962, 1565, 2034, 2361
BspCNI CTCAG 9 cut(s) 1182, 1211, 1389, 1457, 1489, 2190, 2776, 3200, 3309
BspFNI CGCG 1 cut(s) 788
BspHI TCATGA 2 cut(s) 766, 2049
BspLI GGNNCC 5 cut(s) 589, 1000, 1775, 2536, 2677
BspMAI CTGCAG 1 cut(s) 2976
BspMI ACCTGC 2 cut(s) 1210, 3210
BspPI GGATC 4 cut(s) 479, 1513, 3031, 3299
BspQI GCTCTTC 1 cut(s) 282
BspT104I TTCGAA 2 cut(s) 1594, 3046
BspT107I GGYRCC 5 cut(s) 587, 998, 1773, 2534, 2675
BspTI CTTAAG 3 cut(s) 974, 2773, 3194
BspTNI GGTCTC 3 cut(s) 732, 1486, 2564
BsrDI GCAATG 4 cut(s) 84, 522, 2169, 3480
BsrFI RCCGGY 2 cut(s) 590, 3021
BsrGI TGTACA 1 cut(s) 2290
BssAI RCCGGY 2 cut(s) 590, 3021
BssMI GATC 9 cut(s) 484, 630, 1324, 1505, 1900, 2305, 2437, 3036, 3304
BssNAI GTATAC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 999
BssT1I CCWWGG 5 cut(s) 141, 175, 411, 2144, 2740
Bst1107I GTATAC 1 cut(s) 97
Bst2UI CCWGG 6 cut(s) 964, 1679, 1771, 1842, 2837, 2871
Bst4CI ACNGT 9 cut(s) 94, 343, 394, 1638, 1885, 2056, 2070, 2117, 3129
Bst6I CTCTTC 6 cut(s) 282, 374, 437, 1938, 2169, 2231
BstACI GRCGYC 1 cut(s) 999
BstAFI CTTAAG 3 cut(s) 974, 2773, 3194
BstAPI GCANNNNNTGC 1 cut(s) 3387
BstAUI TGTACA 1 cut(s) 2290
BstBAI YACGTR 1 cut(s) 727
BstBI TTCGAA 2 cut(s) 1594, 3046
BstC8I GCNNGC 6 cut(s) 205, 810, 1003, 1098, 2420, 2760
BstDSI CCRYGG 2 cut(s) 141, 2144
BstEII GGTNACC 1 cut(s) 298
BstENI CCTNNNNNAGG 1 cut(s) 3014
BstFNI CGCG 1 cut(s) 788
BstH2I RGCGCY 1 cut(s) 1002
BstHHI GCGC 2 cut(s) 1001, 2500
BstKTI GATC 9 cut(s) 487, 633, 1327, 1508, 1903, 2308, 2440, 3039, 3307
BstMAI GTCTC 8 cut(s) 49, 732, 1486, 1682, 1801, 2564, 2725, 2786
BstMBI GATC 9 cut(s) 484, 630, 1324, 1505, 1900, 2305, 2437, 3036, 3304
BstNI CCWGG 6 cut(s) 964, 1679, 1771, 1842, 2837, 2871
BstNSI RCATGY 8 cut(s) 526, 812, 1100, 1475, 2415, 2422, 2914, 3123
BstPI GGTNACC 1 cut(s) 298
BstSCI CCNGG 6 cut(s) 962, 1677, 1769, 1840, 2835, 2869
BstSFI CTRYAG 5 cut(s) 489, 1119, 2484, 2808, 2972
BstUI CGCG 1 cut(s) 788
BstV1I GCAGC 4 cut(s) 123, 2698, 2767, 3296
BstV2I GAAGAC 3 cut(s) 1382, 1470, 2457
BstX2I RGATCY 2 cut(s) 1505, 3304
BstYI RGATCY 2 cut(s) 1505, 3304
BstZ17I GTATAC 1 cut(s) 97
BsuRI GGCC 6 cut(s) 146, 416, 962, 1565, 2034, 2361
BtgI CCRYGG 2 cut(s) 141, 2144
BtgZI GCGATG 1 cut(s) 803
BtsIMutI CAGTG 5 cut(s) 90, 608, 661, 1475, 1559
BveI ACCTGC 2 cut(s) 1210, 3210
Cac8I GCNNGC 6 cut(s) 205, 810, 1003, 1098, 2420, 2760
CaiI CAGNNNCTG 3 cut(s) 805, 1684, 2692
CciI TCATGA 2 cut(s) 766, 2049
CfoI GCGC 2 cut(s) 1001, 2500
Cfr10I RCCGGY 2 cut(s) 590, 3021
Cfr13I GGNCC 3 cut(s) 415, 624, 3019
CseI GACGC 3 cut(s) 1699, 2670, 2707
CsiI ACCWGGT 1 cut(s) 1677
Csp6I GTAC 5 cut(s) 238, 724, 1202, 2291, 2529
CviQI GTAC 5 cut(s) 238, 724, 1202, 2291, 2529
DinI GGCGCC 1 cut(s) 1000
DpnI GATC 9 cut(s) 486, 632, 1326, 1507, 1902, 2307, 2439, 3038, 3306
DpnII GATC 9 cut(s) 484, 630, 1324, 1505, 1900, 2305, 2437, 3036, 3304
DraI TTTAAA 3 cut(s) 1606, 3135, 3546
EaeI YGGCCR 4 cut(s) 144, 960, 1563, 2359
Eam1104I CTCTTC 6 cut(s) 282, 374, 437, 1938, 2169, 2231
EarI CTCTTC 6 cut(s) 282, 374, 437, 1938, 2169, 2231
EciI GGCGGA 2 cut(s) 772, 982
Eco130I CCWWGG 5 cut(s) 141, 175, 411, 2144, 2740
Eco147I AGGCCT 1 cut(s) 2034
Eco31I GGTCTC 3 cut(s) 732, 1486, 2564
Eco47I GGWCC 2 cut(s) 624, 3019
Eco57I CTGAAG 6 cut(s) 1001, 1275, 2007, 2909, 3374, 3539
Eco91I GGTNACC 1 cut(s) 298
EcoNI CCTNNNNNAGG 1 cut(s) 3014
EcoO65I GGTNACC 1 cut(s) 298
EcoRI GAATTC 3 cut(s) 944, 2259, 2598
EcoRII CCWGG 6 cut(s) 962, 1677, 1769, 1840, 2835, 2869
EcoT14I CCWWGG 5 cut(s) 141, 175, 411, 2144, 2740
EcoT22I ATGCAT 1 cut(s) 795
EgeI GGCGCC 1 cut(s) 1000
EheI GGCGCC 1 cut(s) 1000
ErhI CCWWGG 5 cut(s) 141, 175, 411, 2144, 2740
Esp3I CGTCTC 3 cut(s) 1682, 2725, 2786
FalI AAGNNNNNCTT 4 cut(s) 1270, 1302, 2487, 2519
FauI CCCGC 2 cut(s) 1010, 1663
FauNDI CATATG 1 cut(s) 2190
FbaI TGATCA 1 cut(s) 1900
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 7 cut(s) 112, 464, 786, 833, 2687, 2756, 3285
Fsp4HI GCNGC 7 cut(s) 112, 464, 786, 833, 2687, 2756, 3285
GlaI GCGC 2 cut(s) 1000, 2499
GluI GCNGC 7 cut(s) 112, 464, 786, 833, 2687, 2756, 3285
GsaI CCCAGC 2 cut(s) 1294, 1954
GsuI CTGGAG 5 cut(s) 632, 756, 1706, 1753, 2810
HaeII RGCGCY 1 cut(s) 1002
HaeIII GGCC 6 cut(s) 146, 416, 962, 1565, 2034, 2361
HapII CCGG 6 cut(s) 147, 591, 1054, 1145, 2362, 3022
HgaI GACGC 3 cut(s) 1699, 2670, 2707
HhaI GCGC 2 cut(s) 1001, 2500
Hin1I GRCGYC 1 cut(s) 999
Hin6I GCGC 2 cut(s) 999, 2498
HinP1I GCGC 2 cut(s) 999, 2498
HincII GTYRAC 1 cut(s) 2113
HindII GTYRAC 1 cut(s) 2113
HindIII AAGCTT 4 cut(s) 424, 971, 3227, 3326
HpaII CCGG 6 cut(s) 147, 591, 1054, 1145, 2362, 3022
HphI GGTGA 5 cut(s) 39, 605, 2657, 2833, 3173
Hpy166II GTNNAC 6 cut(s) 97, 2113, 2860, 3125, 3164, 3571
Hpy8I GTNNAC 6 cut(s) 97, 2113, 2860, 3125, 3164, 3571
Hpy99I CGWCG 2 cut(s) 203, 1617
HpyCH4III ACNGT 9 cut(s) 94, 343, 394, 1638, 1885, 2056, 2070, 2117, 3129
HpyCH4IV ACGT 3 cut(s) 186, 474, 726
HpySE526I ACGT 3 cut(s) 186, 474, 726
Hsp92I GRCGYC 1 cut(s) 999
HspAI GCGC 2 cut(s) 999, 2498
KasI GGCGCC 1 cut(s) 998
Ksp22I TGATCA 1 cut(s) 1900
Kzo9I GATC 9 cut(s) 484, 630, 1324, 1505, 1900, 2305, 2437, 3036, 3304
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 4 cut(s) 613, 1216, 1294, 1954
Lsp1109I GCAGC 4 cut(s) 123, 2698, 2767, 3296
MabI ACCWGGT 1 cut(s) 1677
MaeII ACGT 3 cut(s) 186, 474, 726
MaeIII GTNAC 4 cut(s) 298, 337, 593, 2083
MalI GATC 9 cut(s) 486, 632, 1326, 1507, 1902, 2307, 2439, 3038, 3306
MboI GATC 9 cut(s) 484, 630, 1324, 1505, 1900, 2305, 2437, 3036, 3304
MfeI CAATTG 4 cut(s) 882, 1331, 1419, 2726
MflI RGATCY 2 cut(s) 1505, 3304
MhlI GDGCHC 1 cut(s) 277
MlsI TGGCCA 2 cut(s) 962, 1565
MluNI TGGCCA 2 cut(s) 962, 1565
Mly113I GGCGCC 1 cut(s) 999
MlyI GAGTC 2 cut(s) 680, 3246
MmeI TCCRAC 3 cut(s) 1139, 1194, 3075
Mox20I TGGCCA 2 cut(s) 962, 1565
Mph1103I ATGCAT 1 cut(s) 795
MroXI GAANNNNTTC 3 cut(s) 524, 650, 2598
MscI TGGCCA 2 cut(s) 962, 1565
MslI CAYNNNNRTG 2 cut(s) 2853, 2960
Msp20I TGGCCA 2 cut(s) 962, 1565
MspA1I CMGCKG 3 cut(s) 832, 2758, 3070
MspCI CTTAAG 3 cut(s) 974, 2773, 3194
MspI CCGG 6 cut(s) 147, 591, 1054, 1145, 2362, 3022
MspR9I CCNGG 6 cut(s) 964, 1679, 1771, 1842, 2837, 2871
MunI CAATTG 4 cut(s) 882, 1331, 1419, 2726
Mva1269I GAATGC 3 cut(s) 759, 1911, 3062
MvaI CCWGG 6 cut(s) 964, 1679, 1771, 1842, 2837, 2871
MvnI CGCG 1 cut(s) 788
NarI GGCGCC 1 cut(s) 999
NcoI CCATGG 2 cut(s) 141, 2144
NdeI CATATG 1 cut(s) 2190
NdeII GATC 9 cut(s) 484, 630, 1324, 1505, 1900, 2305, 2437, 3036, 3304
NlaIV GGNNCC 5 cut(s) 589, 1000, 1775, 2536, 2677
NmuCI GTSAC 3 cut(s) 337, 593, 2083
NsiI ATGCAT 1 cut(s) 795
NspI RCATGY 8 cut(s) 526, 812, 1100, 1475, 2415, 2422, 2914, 3123
NspV TTCGAA 2 cut(s) 1594, 3046
PaeI GCATGC 3 cut(s) 812, 1100, 2422
PagI TCATGA 2 cut(s) 766, 2049
PasI CCCWGGG 1 cut(s) 1841
PceI AGGCCT 1 cut(s) 2034
PciI ACATGT 3 cut(s) 522, 2411, 3119
PciSI GCTCTTC 1 cut(s) 282
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 3 cut(s) 759, 1911, 3062
PdmI GAANNNNTTC 3 cut(s) 524, 650, 2598
PflFI GACNNNGTC 1 cut(s) 1793
PflMI CCANNNNNTGG 2 cut(s) 1684, 1972
PkrI GCNGC 7 cut(s) 113, 465, 787, 834, 2688, 2757, 3286
PleI GAGTC 2 cut(s) 679, 3246
PluTI GGCGCC 1 cut(s) 1002
PpsI GAGTC 2 cut(s) 679, 3246
Ppu21I YACGTR 1 cut(s) 727
PscI ACATGT 3 cut(s) 522, 2411, 3119
PshBI ATTAAT 3 cut(s) 63, 558, 600
Psp6I CCWGG 6 cut(s) 962, 1677, 1769, 1840, 2835, 2869
PspEI GGTNACC 1 cut(s) 298
PspFI CCCAGC 2 cut(s) 1290, 1950
PspGI CCWGG 6 cut(s) 962, 1677, 1769, 1840, 2835, 2869
PspN4I GGNNCC 5 cut(s) 589, 1000, 1775, 2536, 2677
PspPI GGNCC 3 cut(s) 415, 624, 3019
PstI CTGCAG 1 cut(s) 2976
PstNI CAGNNNCTG 3 cut(s) 805, 1684, 2692
PsuI RGATCY 2 cut(s) 1505, 3304
PsyI GACNNNGTC 1 cut(s) 1793
PvuII CAGCTG 2 cut(s) 2758, 3070
RsaI GTAC 5 cut(s) 239, 725, 1203, 2292, 2530
RsaNI GTAC 5 cut(s) 238, 724, 1202, 2291, 2529
RseI CAYNNNNRTG 2 cut(s) 2853, 2960
SapI GCTCTTC 1 cut(s) 282
SatI GCNGC 7 cut(s) 112, 464, 786, 833, 2687, 2756, 3285
Sau3AI GATC 9 cut(s) 484, 630, 1324, 1505, 1900, 2305, 2437, 3036, 3304
Sau96I GGNCC 3 cut(s) 415, 624, 3019
SchI GAGTC 2 cut(s) 680, 3246
ScrFI CCNGG 6 cut(s) 964, 1679, 1771, 1842, 2837, 2871
SduI GDGCHC 1 cut(s) 277
SexAI ACCWGGT 1 cut(s) 1677
SfcI CTRYAG 5 cut(s) 489, 1119, 2484, 2808, 2972
SfoI GGCGCC 1 cut(s) 1000
SfuI TTCGAA 2 cut(s) 1594, 3046
SinI GGWCC 2 cut(s) 624, 3019
SmiMI CAYNNNNRTG 2 cut(s) 2853, 2960
SmlI CTYRAG 6 cut(s) 974, 1351, 1823, 2124, 2773, 3194
SmoI CTYRAG 6 cut(s) 974, 1351, 1823, 2124, 2773, 3194
SpeI ACTAGT 1 cut(s) 1997
SphI GCATGC 3 cut(s) 812, 1100, 2422
SseBI AGGCCT 1 cut(s) 2034
SspDI GGCGCC 1 cut(s) 998
StuI AGGCCT 1 cut(s) 2034
StyD4I CCNGG 6 cut(s) 962, 1677, 1769, 1840, 2835, 2869
StyI CCWWGG 5 cut(s) 141, 175, 411, 2144, 2740
TaaI ACNGT 9 cut(s) 94, 343, 394, 1638, 1885, 2056, 2070, 2117, 3129
TaiI ACGT 3 cut(s) 189, 477, 729
TaqI TCGA 7 cut(s) 156, 227, 528, 1594, 2926, 3046, 3250
TaqII GACCGA 1 cut(s) 664
TatI WGTACW 3 cut(s) 237, 1201, 2290
TauI GCSGC 3 cut(s) 466, 788, 835
TscAI CASTG 5 cut(s) 97, 615, 661, 1482, 1566
TseFI GTSAC 3 cut(s) 337, 593, 2083
TseI GCWGC 4 cut(s) 111, 2686, 2755, 3284
Tsp45I GTSAC 3 cut(s) 337, 593, 2083
TspGWI ACGGA 2 cut(s) 1601, 2794
TspRI CASTG 5 cut(s) 97, 615, 661, 1482, 1566
Tth111I GACNNNGTC 1 cut(s) 1793
Van91I CCANNNNNTGG 2 cut(s) 1684, 1972
Vha464I CTTAAG 3 cut(s) 974, 2773, 3194
VpaK11BI GGWCC 2 cut(s) 624, 3019
VspI ATTAAT 3 cut(s) 63, 558, 600
XagI CCTNNNNNAGG 1 cut(s) 3014
XapI RAATTY 7 cut(s) 944, 1046, 2259, 2598, 2648, 2933, 3503
XbaI TCTAGA 3 cut(s) 2320, 2698, 3436
XceI RCATGY 8 cut(s) 526, 812, 1100, 1475, 2415, 2422, 2914, 3123
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 3 cut(s) 524, 650, 2598
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.