Rh3DG194100

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
17401979 .. 17405407
3429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG194100.1

Sequence Viewer

Length: 3429 bp
ATGGAAATTGCTTTCAGATCCACTGAGAGCAAGTACAAACTGATTAAAGGGAAATGGAAGTTTGTGGGTGCTCTTTTAGAAGATTTAAATGAAGTTACCAGGTTAGGGGAAAAAATAACACAGAAAGCCGGTGCACTTTTGGATTCCGGACCGGCACAAGCCGGATTAGCTGTACAAGTGAATGATAGTGAGATCAAATGGATAATGAATGCACGGGAATTCGTTTCTAGCGTCGAAAGGTTTCAGAGACTGAGAAAGAGAAAAGAAAATCCCATGTGGTATTTCATCCTCTGGGCTGATCTGTTTCCAATGGTTGATGTTTTCCTCCAGATGCGATGGGCCGTTGGTTTCCTCGAGAAGAAGAAATTATGCGCCAGCATCTGTAGATCACTGGAGCACACGAGGTCCAAAGTTCGAAGTCTGCAGGACAGATGTTATGTTGATGAATCCAAACATCAATCTGTCAAGTACAAAGCATCACCTGATGGCTTAAGAGCTGACGTTTTGATTTCCTCTCTTAGCAACCTGGATCCGAATACAGATGGCGAAGGCATCGTCATAATGCATTTACAACAAGTGCATGCTTTCATGGAGGATCTACACCAGCTCAAACTGCTAACTGCAAGGGAAGTGTCATGGGCGAGGAAAGCAAACAAGACTCTTGACAAAACAAAGGATGTCGTTGCCACCATAATCAAGAGAAGAGAAAATCAGAGAAGGTGGTTCTCAGCTGTCACTAACTGGGGGGAGGAGGAGAAACTTAAGGCGGACATAGCGTACATTCGGAGCAGGGTACCTGACCTCCTGGAAACGAAGGAAAGATATGGTATCAAATTTATCAGACGAGGTTCATTAAAATCTGATCCCCGATCTCCTCAACAGCATAACTTGCAGAATCATACTCCAGATCCTGATACGGACTTGTCCTCCTATGTGACCAGCATTCATAATTGGCTGAATCAATTGCCAGCTCGAGCAGCAAAAAAGTCGGAACATGAGATCAGCTTGCTGAGAGATGAGTTGGGCCACATGCATAGACTGTTGAAACATACAAATGCGGCTCTATATGCTAGCAAGGTTAGAAATGCTTGCTTGGAGCAATTGAAGAAAATGGCCGCGGAAGCAAAGCAGTATTCAGAAAACCAAATGGAATTTTCAGAGAAAAAGCATGTGTCCGACATCAAGAGAATCATTGTTCTCCTTCGGAGATTCAGTCAAGCATATTCCATTGAAAAGGAGGAACCATGCTATGCAGTTGGTTTGGAAGAAGACACACATAAACTGGTCTTACGGCTGACAGACCCTGGTAGAGAGATCATTTCCATTGGAGGCATGAAGGGCATTGGTAAGACAACTCTGGCAAACAAAGTCTATCACCACGGTACCATTGCAAGCCATTTTAAACTCCGACGATGGGTATCTCTACCTCATCAAGGGCACGAGGAAATAGTTTTAAGAAGACTTGAAAAGAGTGAAGAGAAACAGAGTGGAAAAGACTGGGACAAGAATGTGCATGATGATCTCTTGAAGAAGGAGAAATACCTTCTACTTTTGGACAATGTCTCATCACAAGAAGTCTTGGATGATCTCAAACAGGAGATACTCCCAGCGATGGCAGAGGGGAGCAAGATTTTAGTAACCACAAACCAGTTGGCTGGCGCTGATCAAAATAGCACTCACTACCCACTTCGGCTACGAACGCAAAAAGAAAGCTGGGAGTTTTTCACCCAGATGGTTCACATTTCTCCCAAGGAAGAAGCTATTGCAAAGAAACTTGTGGCAAGAACCGGAGGCTTACCGCTTGTGATCTTACGTCTTGGGTATCTACTGTCTATGAAAAAAGTGACGTCTGAGATCGATGAACACTATTCGAGCTTGGTTGAGCATATTCTTCAGGGACATAACCGAAAGCCATGGTCCGATACTCTGGAAATGCATAGAAACGATTTGGAAAATGGCTACTTTGAACTCTTCCCTGGTGATTTCGAAATCCCTGCAAGGAGATTAGTGGCTTTGTGGGTTGCAAAGGAGTTATTTGAAACAGAGAATCTCGCAAATAAGCATCTGTTGGAGTTGATTGACCGTAATATGATTCAAGTCGTTCGAGAGAAGCGTAATGGGGATGTCAAGACGTGTTGCTTGCCTCCTGCCCTTCGAGAACTCTGGATGCAGGACAAAGGCGAAAAAATTAGCAGCATAACTTATTCATGGTCCCAAAGTACAAGTTCAGAACAGCAACTGGTTTCCTATCATTGTGATCGTAACGATGCTACCTTCAGTCGCATTCATGGTCTCAACATGAACTCATCAAATGGAAAGCATCCACGCTCGGTTGTCTTCTTTGATACTCGAGAAGGGAATAAACCCGGAGAGGAAATAGGTGAATTTGTTCAAAGGTGCATTGCATGTGGTTTCTTCCAAAAGCTTCTGGTTCTTGACCTTGAACGTGTATTCAGACCTCAGTTGCCAGCGTCTATAGAAAAATTAGAGCACCTGACATATCTGGGCTTGAGGTGGACTTGCTTAGAGGAAATCCCATCACCTATTGGCAACTTGATGAAGCTCCGAACTCTAGATTTGAAGCATACAAATCTTCTTGCTCTTCCTAAATCGATTTGGAATCTGAAAGAACTCAAGCACATATACTTCAACAAGAATTGTCGAATCAAAGCTAGGTCTTTACCAACTTCCATTTCCATGAGGAATCTGCAGACGTTATCAGGAGTATTTGTGGACAAGTCCTCTGTTGTGAAGAACCGGCTGGACAAGTTGATCAAGCTTCGAAAATTGAAATTGACATTCAATCTGGCGGAGCAAGACCAAAAGGTATTGGCGAATTGGATTGAGCACCTGACTCAATTAGAATCCTTAAAGATGGTGTCAACTGACGAGAATTTTTTCCCTGGGGTTCTGAAATTGGAAAGTTTGTCAAACCTTAGGAATCTGTCCAGTCTATATCTGTTTGGAAGGCTTCAAACTCCATCCATCATACATAGTCTCCCAGAAAGCCTCACTCATCTTACCTTATCAGCTTCCGGGATAGTTGACGATCCAATGCCAAAGTTAGGGATGCTTCCAAACCTGAAATCACTTTCTTTGAACTCTGGTTCTTATCAAGGAACAGACATGGTTTGCTCCACAGATCGCTTTCAGGAACTTGTGGTTCTTAGGCTTTGGCACCTGGATAATCTGAAAACAATTGATGTGCGAAAAGGAGCAATGCCAAATCTTAGGGAGTTAGAGATTAGATCCTGCAGCAAGTTCAAAATCACAAGTGATGGACTGAAAGATTTAAAGTTCCTCCAAGAAATTAAGTTGGGGAATATGCCCAATGATCGCACAGCTGATACTCTGAAAGACTTTGCAGAAGCTATGGCGAAGTCCCGCGGAAAGGTTCACCTTCCTGCAATCAAAATAGACTACTGGTAG

Protein Analysis

1142

Amino Acids

131.32

Weight (kDa)

9.24

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 423 - 580 1.1e-21 NB-ARC domain
WHD_DRP PF23559 657 - 715 2.8e-06 Disease resistance protein Winged helix domain
LRR_14 PF23598 805 - 1126 1.9e-44 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1850
Acc65I GGTACC 2 cut(s) 793, 1382
AccB1I GGYRCC 3 cut(s) 793, 1382, 3177
AccII CGCG 2 cut(s) 1118, 3387
AccIII TCCGGA 1 cut(s) 146
AciI CCGC 8 cut(s) 767, 1058, 1116, 1118, 1799, 2810, 3385, 3387
AclWI GGATC 8 cut(s) 12, 524, 537, 603, 857, 902, 3044, 3243
AcoI YGGCCR 1 cut(s) 1113
AcsI RAATTY 5 cut(s) 218, 833, 1151, 2384, 2893
AcuI CTGAAG 2 cut(s) 1877, 2260
AcyI GRCGYC 1 cut(s) 1847
AfaI GTAC 7 cut(s) 35, 174, 470, 779, 795, 1384, 2221
AfiI CCNNNNNNNGG 6 cut(s) 105, 1414, 1433, 1612, 3065, 3391
AflII CTTAAG 2 cut(s) 490, 761
AflIII ACRYGT 2 cut(s) 2132, 2446
AjiI CACGTC 1 cut(s) 2133
AjnI CCWGG 7 cut(s) 98, 525, 804, 1303, 1975, 2902, 3180
AjuI GAANNNNNNNTTGG 2 cut(s) 2677, 2709
Alw21I GWGCWC 5 cut(s) 73, 136, 399, 2493, 2850
Alw26I GTCTC 4 cut(s) 241, 1567, 2297, 3002
Alw44I GTGCAC 1 cut(s) 132
AlwI GGATC 8 cut(s) 12, 524, 537, 603, 857, 902, 3044, 3243
AlwNI CAGNNNCTG 5 cut(s) 250, 381, 911, 1304, 2239
Ama87I CYCGRG 3 cut(s) 353, 972, 2349
Aor13HI TCCGGA 1 cut(s) 146
AoxI GGCC 3 cut(s) 339, 1024, 1113
ApaLI GTGCAC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 977, 2193, 3255
ApoI RAATTY 5 cut(s) 218, 833, 1151, 2384, 2893
ArsI GACNNNNNNTTYG 2 cut(s) 540, 572
Asp700I GAANNNNTTC 3 cut(s) 240, 2388, 2897
Asp718I GGTACC 2 cut(s) 793, 1382
AspLEI GCGC 2 cut(s) 374, 1661
AspS9I GGNCC 6 cut(s) 149, 339, 405, 1024, 1917, 2211
AsuC2I CCSGG 2 cut(s) 2367, 3037
AsuHPI GGTGA 7 cut(s) 471, 1367, 1717, 1991, 2393, 2532, 3389
AsuII TTCGAA 3 cut(s) 415, 1986, 2782
AsuNHI GCTAGC 1 cut(s) 1070
AvaI CYCGRG 3 cut(s) 353, 972, 2349
AvaII GGWCC 4 cut(s) 149, 405, 1917, 2211
AxyI CCTNAGG 1 cut(s) 2936
BaeGI GKGCMC 2 cut(s) 136, 1440
BaeI ACNNNNGTAYC 2 cut(s) 1366, 1399
BamHI GGATCC 1 cut(s) 529
BanI GGYRCC 3 cut(s) 793, 1382, 3177
BarI GAAGNNNNNNTAC 2 cut(s) 1523, 1555
BauI CACGAG 2 cut(s) 400, 1439
BbsI GAAGAC 3 cut(s) 1275, 1465, 2329
Bbv12I GWGCWC 5 cut(s) 73, 136, 399, 2493, 2850
BbvI GCAGC 3 cut(s) 989, 2205, 3267
BceAI ACGGC 2 cut(s) 326, 1307
BcgI CGANNNNNNTGC 4 cut(s) 969, 1003, 1976, 2010
BciT130I CCWGG 7 cut(s) 100, 527, 806, 1305, 1977, 2904, 3182
BclI TGATCA 2 cut(s) 1663, 2772
BcnI CCSGG 2 cut(s) 2367, 3037
BcoDI GTCTC 4 cut(s) 241, 1567, 2297, 3002
BfaI CTAG 4 cut(s) 228, 1071, 2573, 2673
BfmI CTRYAG 5 cut(s) 382, 422, 2475, 2708, 3253
BfoI RGCGCY 1 cut(s) 1662
BfrI CTTAAG 2 cut(s) 490, 761
BisI GCNGC 5 cut(s) 978, 1059, 1116, 2194, 3256
BlsI GCNGC 5 cut(s) 979, 1060, 1117, 2195, 3257
Bme1390I CCNGG 9 cut(s) 100, 527, 806, 1305, 1977, 2367, 2904, 3037, 3182
Bme18I GGWCC 4 cut(s) 149, 405, 1917, 2211
BmeT110I CYCGRG 3 cut(s) 353, 972, 2349
BmgBI CACGTC 1 cut(s) 2133
BmgT120I GGNCC 6 cut(s) 149, 339, 405, 1024, 1917, 2211
BmiI GGNNCC 6 cut(s) 531, 795, 1242, 1384, 2213, 3179
BmrFI CCNGG 9 cut(s) 100, 527, 806, 1305, 1977, 2367, 2904, 3037, 3182
BmrI ACTGGG 2 cut(s) 751, 1507
BmsI GCATC 9 cut(s) 321, 387, 485, 561, 2071, 2157, 2257, 2329, 3060
BmtI GCTAGC 1 cut(s) 1074
BmuI ACTGGG 2 cut(s) 751, 1507
BpiI GAAGAC 3 cut(s) 1275, 1465, 2329
BpmI CTGGAG 3 cut(s) 311, 413, 888
Bpu14I TTCGAA 3 cut(s) 415, 1986, 2782
BpuEI CTTGAG 2 cut(s) 2530, 2618
BpuMI CCSGG 2 cut(s) 2367, 3037
Bsa29I ATCGAT 2 cut(s) 1857, 2612
BsaBI GATNNNNATC 1 cut(s) 1417
BsaHI GRCGYC 1 cut(s) 1847
BsaI GGTCTC 1 cut(s) 2297
BsaJI CCNNGG 9 cut(s) 1116, 1303, 1378, 1749, 1913, 1975, 2902, 2903, 3385
BsaWI WCCGGW 2 cut(s) 146, 1787
Bsc4I CCNNNNNNNGG 6 cut(s) 105, 1414, 1433, 1612, 3065, 3391
Bse118I RCCGGY 3 cut(s) 128, 151, 2757
Bse1I ACTGG 8 cut(s) 396, 746, 1287, 1502, 1648, 2244, 2949, 3428
Bse21I CCTNAGG 1 cut(s) 2936
Bse3DI GCAATG 3 cut(s) 1386, 2400, 3225
Bse8I GATNNNNATC 1 cut(s) 1417
BseAI TCCGGA 1 cut(s) 146
BseBI CCWGG 7 cut(s) 100, 527, 806, 1305, 1977, 2904, 3182
BseCI ATCGAT 2 cut(s) 1857, 2612
BseDI CCNNGG 9 cut(s) 1116, 1303, 1378, 1749, 1913, 1975, 2902, 2903, 3385
BseGI GGATG 8 cut(s) 285, 682, 1588, 2128, 2172, 2320, 2981, 3075
BseJI GATNNNNATC 1 cut(s) 1417
BseLI CCNNNNNNNGG 6 cut(s) 105, 1414, 1433, 1612, 3065, 3391
BseMI GCAATG 3 cut(s) 1386, 2400, 3225
BseMII CTCAG 6 cut(s) 15, 242, 741, 1001, 1842, 2474
BseNI ACTGG 8 cut(s) 396, 746, 1287, 1502, 1648, 2244, 2949, 3428
BseRI GAGGAG 3 cut(s) 764, 767, 864
BseSI GKGCMC 2 cut(s) 136, 1440
BseXI GCAGC 3 cut(s) 989, 2205, 3267
BseYI CCCAGC 2 cut(s) 1606, 1713
Bsh1236I CGCG 2 cut(s) 1118, 3387
BshFI GGCC 3 cut(s) 341, 1026, 1115
BshNI GGYRCC 3 cut(s) 793, 1382, 3177
BshVI ATCGAT 2 cut(s) 1857, 2612
BsiHKAI GWGCWC 5 cut(s) 73, 136, 399, 2493, 2850
BsiHKCI CYCGRG 3 cut(s) 353, 972, 2349
BsiSI CCGG 8 cut(s) 129, 147, 152, 162, 1788, 2367, 2758, 3036
BslFI GGGAC 4 cut(s) 1514, 1911, 2197, 3367
BslI CCNNNNNNNGG 6 cut(s) 105, 1414, 1433, 1612, 3065, 3391
BsmAI GTCTC 4 cut(s) 241, 1567, 2297, 3002
BsmFI GGGAC 4 cut(s) 1514, 1911, 2197, 3367
BsmI GAATGC 3 cut(s) 214, 942, 2283
BsnI GGCC 3 cut(s) 341, 1026, 1115
Bso31I GGTCTC 1 cut(s) 2297
BsoBI CYCGRG 3 cut(s) 353, 972, 2349
Bsp119I TTCGAA 3 cut(s) 415, 1986, 2782
Bsp1286I GDGCHC 6 cut(s) 73, 136, 399, 1440, 2493, 2850
Bsp13I TCCGGA 1 cut(s) 146
Bsp1407I TGTACA 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 1913
BspACI CCGC 8 cut(s) 767, 1058, 1116, 1118, 1799, 2810, 3385, 3387
BspANI GGCC 3 cut(s) 341, 1026, 1115
BspCNI CTCAG 6 cut(s) 16, 243, 740, 1002, 1843, 2473
BspDI ATCGAT 2 cut(s) 1857, 2612
BspEI TCCGGA 1 cut(s) 146
BspFNI CGCG 2 cut(s) 1118, 3387
BspLI GGNNCC 6 cut(s) 531, 795, 1242, 1384, 2213, 3179
BspMAI CTGCAG 3 cut(s) 426, 2712, 3257
BspOI GCTAGC 1 cut(s) 1074
BspPI GGATC 8 cut(s) 12, 524, 537, 603, 857, 902, 3044, 3243
BspQI GCTCTTC 1 cut(s) 2607
BspT104I TTCGAA 3 cut(s) 415, 1986, 2782
BspT107I GGYRCC 3 cut(s) 793, 1382, 3177
BspTI CTTAAG 2 cut(s) 490, 761
BspTNI GGTCTC 1 cut(s) 2297
BsrDI GCAATG 3 cut(s) 1386, 2400, 3225
BsrFI RCCGGY 3 cut(s) 128, 151, 2757
BsrGI TGTACA 1 cut(s) 172
BsrI ACTGG 8 cut(s) 396, 746, 1287, 1502, 1648, 2244, 2949, 3428
BssAI RCCGGY 3 cut(s) 128, 151, 2757
BssECI CCNNGG 9 cut(s) 1116, 1303, 1378, 1749, 1913, 1975, 2902, 2903, 3385
BssNI GRCGYC 1 cut(s) 1847
BssSI CACGAG 2 cut(s) 400, 1439
BssT1I CCWWGG 2 cut(s) 1749, 1913
Bst2BI CACGAG 2 cut(s) 400, 1439
Bst2UI CCWGG 7 cut(s) 100, 527, 806, 1305, 1977, 2904, 3182
Bst4CI ACNGT 4 cut(s) 1041, 1382, 1830, 2084
Bst6I CTCTTC 4 cut(s) 697, 1470, 1976, 2607
BstACI GRCGYC 1 cut(s) 1847
BstAFI CTTAAG 2 cut(s) 490, 761
BstAPI GCANNNNNTGC 1 cut(s) 889
BstAUI TGTACA 1 cut(s) 172
BstBI TTCGAA 3 cut(s) 415, 1986, 2782
BstDSI CCRYGG 4 cut(s) 1116, 1378, 1913, 3385
BstENI CCTNNNNNAGG 1 cut(s) 1431
BstF5I GGATG 8 cut(s) 285, 682, 1588, 2128, 2172, 2320, 2981, 3075
BstFNI CGCG 2 cut(s) 1118, 3387
BstH2I RGCGCY 1 cut(s) 1662
BstHHI GCGC 2 cut(s) 374, 1661
BstMAI GTCTC 4 cut(s) 241, 1567, 2297, 3002
BstNI CCWGG 7 cut(s) 100, 527, 806, 1305, 1977, 2904, 3182
BstNSI RCATGY 4 cut(s) 584, 1033, 1172, 2409
BstSCI CCNGG 9 cut(s) 98, 525, 804, 1303, 1975, 2365, 2902, 3035, 3180
BstSFI CTRYAG 5 cut(s) 382, 422, 2475, 2708, 3253
BstSLI GKGCMC 2 cut(s) 136, 1440
BstUI CGCG 2 cut(s) 1118, 3387
BstV1I GCAGC 3 cut(s) 989, 2205, 3267
BstV2I GAAGAC 3 cut(s) 1275, 1465, 2329
BstX2I RGATCY 5 cut(s) 17, 529, 595, 907, 3248
BstXI CCANNNNNNTGG 1 cut(s) 1655
BstYI RGATCY 5 cut(s) 17, 529, 595, 907, 3248
Bsu15I ATCGAT 2 cut(s) 1857, 2612
Bsu36I CCTNAGG 1 cut(s) 2936
BsuRI GGCC 3 cut(s) 341, 1026, 1115
BsuTUI ATCGAT 2 cut(s) 1857, 2612
BtgI CCRYGG 4 cut(s) 1116, 1378, 1913, 3385
BtgZI GCGATG 2 cut(s) 349, 1625
BtrI CACGTC 1 cut(s) 2133
BtsCI GGATG 8 cut(s) 285, 682, 1588, 2128, 2172, 2320, 2981, 3075
BtsIMutI CAGTG 2 cut(s) 21, 389
CaiI CAGNNNCTG 5 cut(s) 250, 381, 911, 1304, 2239
CfoI GCGC 2 cut(s) 374, 1661
Cfr10I RCCGGY 3 cut(s) 128, 151, 2757
Cfr13I GGNCC 6 cut(s) 149, 339, 405, 1024, 1917, 2211
Cfr42I CCGCGG 2 cut(s) 1119, 3388
ClaI ATCGAT 2 cut(s) 1857, 2612
CpoI CGGWCCG 1 cut(s) 149
CseI GACGC 2 cut(s) 220, 2460
CsiI ACCWGGT 1 cut(s) 98
Csp6I GTAC 7 cut(s) 34, 173, 469, 778, 794, 1383, 2220
CspI CGGWCCG 1 cut(s) 149
CviQI GTAC 7 cut(s) 34, 173, 469, 778, 794, 1383, 2220
DraI TTTAAA 3 cut(s) 87, 1402, 3294
EaeI YGGCCR 1 cut(s) 1113
Eam1104I CTCTTC 4 cut(s) 697, 1470, 1976, 2607
EarI CTCTTC 4 cut(s) 697, 1470, 1976, 2607
EciI GGCGGA 2 cut(s) 782, 2825
Eco130I CCWWGG 2 cut(s) 1749, 1913
Eco31I GGTCTC 1 cut(s) 2297
Eco47I GGWCC 4 cut(s) 149, 405, 1917, 2211
Eco57I CTGAAG 2 cut(s) 1877, 2260
Eco81I CCTNAGG 1 cut(s) 2936
Eco88I CYCGRG 3 cut(s) 353, 972, 2349
EcoNI CCTNNNNNAGG 1 cut(s) 1431
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 7 cut(s) 98, 525, 804, 1303, 1975, 2902, 3180
EcoT14I CCWWGG 2 cut(s) 1749, 1913
EcoT22I ATGCAT 3 cut(s) 567, 1035, 1938
ErhI CCWWGG 2 cut(s) 1749, 1913
FaqI GGGAC 4 cut(s) 1514, 1911, 2197, 3367
FauI CCCGC 1 cut(s) 3392
FbaI TGATCA 2 cut(s) 1663, 2772
Fnu4HI GCNGC 5 cut(s) 978, 1059, 1116, 2194, 3256
FokI GGATG 8 cut(s) 272, 689, 1595, 2135, 2179, 2307, 2968, 3082
Fsp4HI GCNGC 5 cut(s) 978, 1059, 1116, 2194, 3256
FspBI CTAG 4 cut(s) 228, 1071, 2573, 2673
GlaI GCGC 2 cut(s) 373, 1660
GluI GCNGC 5 cut(s) 978, 1059, 1116, 2194, 3256
GsaI CCCAGC 2 cut(s) 1610, 1717
GsuI CTGGAG 3 cut(s) 311, 413, 888
HaeII RGCGCY 1 cut(s) 1662
HaeIII GGCC 3 cut(s) 341, 1026, 1115
HapII CCGG 8 cut(s) 129, 147, 152, 162, 1788, 2367, 2758, 3036
HgaI GACGC 2 cut(s) 220, 2460
HhaI GCGC 2 cut(s) 374, 1661
Hin1I GRCGYC 1 cut(s) 1847
Hin6I GCGC 2 cut(s) 372, 1659
HinP1I GCGC 2 cut(s) 372, 1659
HincII GTYRAC 2 cut(s) 2883, 3046
HindII GTYRAC 2 cut(s) 2883, 3046
HindIII AAGCTT 2 cut(s) 2423, 2777
HpaII CCGG 8 cut(s) 129, 147, 152, 162, 1788, 2367, 2758, 3036
HphI GGTGA 7 cut(s) 471, 1367, 1717, 1991, 2393, 2532, 3389
Hpy166II GTNNAC 7 cut(s) 134, 1738, 2517, 2734, 2883, 3046, 3397
Hpy8I GTNNAC 7 cut(s) 134, 1738, 2517, 2734, 2883, 3046, 3397
Hpy99I CGWCG 2 cut(s) 236, 1413
HpyCH4III ACNGT 4 cut(s) 1041, 1382, 1830, 2084
HpyCH4IV ACGT 6 cut(s) 501, 1813, 1847, 2132, 2446, 2714
HpySE526I ACGT 6 cut(s) 501, 1813, 1847, 2132, 2446, 2714
Hsp92I GRCGYC 1 cut(s) 1847
HspAI GCGC 2 cut(s) 372, 1659
Kpn2I TCCGGA 1 cut(s) 146
KpnI GGTACC 2 cut(s) 797, 1386
Ksp22I TGATCA 2 cut(s) 1663, 2772
KspI CCGCGG 2 cut(s) 1119, 3388
LguI GCTCTTC 1 cut(s) 2607
LmnI GCTCC 8 cut(s) 394, 786, 1096, 1623, 2568, 2812, 3140, 3215
Lsp1109I GCAGC 3 cut(s) 989, 2205, 3267
LweI GCATC 9 cut(s) 321, 387, 485, 561, 2071, 2157, 2257, 2329, 3060
MabI ACCWGGT 1 cut(s) 98
MaeI CTAG 4 cut(s) 228, 1071, 2573, 2673
MaeII ACGT 6 cut(s) 501, 1813, 1847, 2132, 2446, 2714
MaeIII GTNAC 6 cut(s) 94, 733, 934, 1636, 1843, 2261
MfeI CAATTG 3 cut(s) 962, 1100, 3198
MflI RGATCY 5 cut(s) 17, 529, 595, 907, 3248
MhlI GDGCHC 6 cut(s) 73, 136, 399, 1440, 2493, 2850
MlyI GAGTC 2 cut(s) 652, 2848
MmeI TCCRAC 4 cut(s) 969, 1200, 1432, 2049
Mph1103I ATGCAT 3 cut(s) 567, 1035, 1938
MroI TCCGGA 1 cut(s) 146
MroXI GAANNNNTTC 3 cut(s) 240, 2388, 2897
MslI CAYNNNNRTG 3 cut(s) 1053, 1730, 2696
MspA1I CMGCKG 4 cut(s) 731, 1118, 3344, 3387
MspCI CTTAAG 2 cut(s) 490, 761
MspI CCGG 8 cut(s) 129, 147, 152, 162, 1788, 2367, 2758, 3036
MspR9I CCNGG 9 cut(s) 100, 527, 806, 1305, 1977, 2367, 2904, 3037, 3182
MunI CAATTG 3 cut(s) 962, 1100, 3198
Mva1269I GAATGC 3 cut(s) 214, 942, 2283
MvaI CCWGG 7 cut(s) 100, 527, 806, 1305, 1977, 2904, 3182
MvnI CGCG 2 cut(s) 1118, 3387
NciI CCSGG 2 cut(s) 2367, 3037
NcoI CCATGG 1 cut(s) 1913
NheI GCTAGC 1 cut(s) 1070
NlaIV GGNNCC 6 cut(s) 531, 795, 1242, 1384, 2213, 3179
NmuCI GTSAC 3 cut(s) 733, 934, 1843
NsiI ATGCAT 3 cut(s) 567, 1035, 1938
NspI RCATGY 4 cut(s) 584, 1033, 1172, 2409
NspV TTCGAA 3 cut(s) 415, 1986, 2782
PaeI GCATGC 1 cut(s) 584
PaeR7I CTCGAG 3 cut(s) 353, 972, 2349
PasI CCCWGGG 1 cut(s) 2903
PciSI GCTCTTC 1 cut(s) 2607
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 2110
PctI GAATGC 3 cut(s) 214, 942, 2283
PdmI GAANNNNTTC 3 cut(s) 240, 2388, 2897
PflFI GACNNNGTC 1 cut(s) 1559
PfoI TCCNGGA 2 cut(s) 804, 3035
PkrI GCNGC 5 cut(s) 979, 1060, 1117, 2195, 3257
PleI GAGTC 2 cut(s) 652, 2848
PpsI GAGTC 2 cut(s) 652, 2848
Psp6I CCWGG 7 cut(s) 98, 525, 804, 1303, 1975, 2902, 3180
PspFI CCCAGC 2 cut(s) 1606, 1713
PspGI CCWGG 7 cut(s) 98, 525, 804, 1303, 1975, 2902, 3180
PspN4I GGNNCC 6 cut(s) 531, 795, 1242, 1384, 2213, 3179
PspPI GGNCC 6 cut(s) 149, 339, 405, 1024, 1917, 2211
PspXI VCTCGAGB 1 cut(s) 972
PstI CTGCAG 3 cut(s) 426, 2712, 3257
PstNI CAGNNNCTG 5 cut(s) 250, 381, 911, 1304, 2239
PsuI RGATCY 5 cut(s) 17, 529, 595, 907, 3248
PsyI GACNNNGTC 1 cut(s) 1559
PvuII CAGCTG 2 cut(s) 731, 3344
RsaI GTAC 7 cut(s) 35, 174, 470, 779, 795, 1384, 2221
RsaNI GTAC 7 cut(s) 34, 173, 469, 778, 794, 1383, 2220
RseI CAYNNNNRTG 3 cut(s) 1053, 1730, 2696
Rsr2I CGGWCCG 1 cut(s) 149
RsrII CGGWCCG 1 cut(s) 149
SacII CCGCGG 2 cut(s) 1119, 3388
SapI GCTCTTC 1 cut(s) 2607
SatI GCNGC 5 cut(s) 978, 1059, 1116, 2194, 3256
Sau96I GGNCC 6 cut(s) 149, 339, 405, 1024, 1917, 2211
SchI GAGTC 2 cut(s) 652, 2848
ScrFI CCNGG 9 cut(s) 100, 527, 806, 1305, 1977, 2367, 2904, 3037, 3182
SduI GDGCHC 6 cut(s) 73, 136, 399, 1440, 2493, 2850
SexAI ACCWGGT 1 cut(s) 98
SfaNI GCATC 9 cut(s) 321, 387, 485, 561, 2071, 2157, 2257, 2329, 3060
SfcI CTRYAG 5 cut(s) 382, 422, 2475, 2708, 3253
Sfr274I CTCGAG 3 cut(s) 353, 972, 2349
Sfr303I CCGCGG 2 cut(s) 1119, 3388
SfuI TTCGAA 3 cut(s) 415, 1986, 2782
SgrBI CCGCGG 2 cut(s) 1119, 3388
SinI GGWCC 4 cut(s) 149, 405, 1917, 2211
SlaI CTCGAG 3 cut(s) 353, 972, 2349
SmiI ATTTAAAT 1 cut(s) 87
SmiMI CAYNNNNRTG 3 cut(s) 1053, 1730, 2696
SmlI CTYRAG 7 cut(s) 353, 490, 761, 972, 2349, 2509, 2633
SmoI CTYRAG 7 cut(s) 353, 490, 761, 972, 2349, 2509, 2633
SphI GCATGC 1 cut(s) 584
SsiI CCGC 8 cut(s) 767, 1058, 1116, 1118, 1799, 2810, 3385, 3387
SspMI CTAG 4 cut(s) 228, 1071, 2573, 2673
StyD4I CCNGG 9 cut(s) 98, 525, 804, 1303, 1975, 2365, 2902, 3035, 3180
StyI CCWWGG 2 cut(s) 1749, 1913
SwaI ATTTAAAT 1 cut(s) 87
TaaI ACNGT 4 cut(s) 1041, 1382, 1830, 2084
TaiI ACGT 6 cut(s) 504, 1816, 1850, 2135, 2449, 2717
TatI WGTACW 4 cut(s) 33, 172, 468, 2219
TauI GCSGC 2 cut(s) 1061, 1118
TscAI CASTG 2 cut(s) 28, 396
TseFI GTSAC 3 cut(s) 733, 934, 1843
TseI GCWGC 3 cut(s) 977, 2193, 3255
Tsp45I GTSAC 3 cut(s) 733, 934, 1843
TspGWI ACGGA 1 cut(s) 932
TspRI CASTG 2 cut(s) 28, 396
Tth111I GACNNNGTC 1 cut(s) 1559
Vha464I CTTAAG 2 cut(s) 490, 761
VneI GTGCAC 1 cut(s) 132
VpaK11BI GGWCC 4 cut(s) 149, 405, 1917, 2211
XagI CCTNNNNNAGG 1 cut(s) 1431
XapI RAATTY 5 cut(s) 218, 833, 1151, 2384, 2893
XbaI TCTAGA 1 cut(s) 2572
XceI RCATGY 4 cut(s) 584, 1033, 1172, 2409
XcmI CCANNNNNNNNNTGG 1 cut(s) 1648
XhoI CTCGAG 3 cut(s) 353, 972, 2349
XmnI GAANNNNTTC 3 cut(s) 240, 2388, 2897
XspI CTAG 4 cut(s) 228, 1071, 2573, 2673
ZraI GACGTC 1 cut(s) 1848
Zsp2I ATGCAT 3 cut(s) 567, 1035, 1938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.