Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

24266674 .. 24267827

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1132700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTTGATGAAACCTTGTACTCAATCGCCGTTTTAATTGATGAGCTGAAGAACGAAGACATAAAGCTCCATTTGAACTCAATCCGGAGGATTTCCACGATTGCCCGTGCACTCGGAGAAGAGATGACCAAGAAGGAACTGATTCCTTTCCTTAGCGAGAACAATGACGACGATGATGAAGTGCTGCTGGCAATGGCGGAAGAGTTAGGGGTGTTTATCCTTTATGATAAGTCTTGGCGTGTTCGGTACATGGTTGTGAATAAATTATACGAGTTGTGTAAAGTTGTTGGTCCAGAAGCTACAAGGTCGGACCTGGTGCCTGCATATGTTCAGGTTCAAAGAGATAATAAGGCTGAATTACGAATAGCTGCTGCAGGAAAAGTAATTAAGTTTTGCCGAATTTTGATTCCAGAACTTGCCATTCAGCAGATCCTTCCTTTTTCCCAAAACCTTAACTTCATGAAGTACTCTGTTTTTTTGCTTGTACAGAGTACTATGTTTTTTACTTTTTGTTTTTGGTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0008287 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009914 GO:0009926 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010119 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0019220 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0030312 GO:0031323 GO:0031399 GO:0032268 GO:0032870 GO:0032991 GO:0033993 GO:0035303 GO:0035304 GO:0042221 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051716 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902494 GO:1903293 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

176

Amino Acids

20.27

Weight (kDa)

5.14

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPP2R1A-like_HEAT	PF22646	98 - 151	1.8e-10	PPP2R1A-like HEAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	399
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	5 cut(s)	20, 248, 467, 486, 493
AgsI	TTSAA	2 cut(s)	76, 338
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	46, 67, 299, 368
AluI	AGCT	4 cut(s)	46, 67, 299, 368
Alw21I	GWGCWC	1 cut(s)	112
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	424
Aor13HI	TCCGGA	1 cut(s)	84
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	3 cut(s)	184, 368, 371
ApoI	RAATTY	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	290, 310
AvaII	GGWCC	2 cut(s)	290, 310
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	171, 355, 358
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	3 cut(s)	185, 369, 372
BlsI	GCNGC	3 cut(s)	186, 370, 373
BmcAI	AGTACT	2 cut(s)	467, 493
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	2 cut(s)	290, 310
BmgT120I	GGNCC	2 cut(s)	290, 310
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	3 cut(s)	171, 355, 358
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp13I	TCCGGA	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	197
BspEI	TCCGGA	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	484
BssMI	GATC	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	114, 195
BstAUI	TGTACA	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	189, 321
BstDEI	CTNAG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	429
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	3 cut(s)	171, 355, 358
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	189, 321
CciI	TCATGA	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	290, 310
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	5 cut(s)	19, 247, 466, 485, 492
CviAII	CATG	2 cut(s)	250, 460
CviJI	RGCY	5 cut(s)	46, 67, 299, 353, 368
CviKI_1	RGCY	5 cut(s)	46, 67, 299, 353, 368
CviQI	GTAC	5 cut(s)	19, 247, 466, 485, 492
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	114, 195
EarI	CTCTTC	2 cut(s)	114, 195
EciI	GGCGGA	1 cut(s)	212
Eco47I	GGWCC	2 cut(s)	290, 310
Eco57I	CTGAAG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	253, 463
FaiI	YATR	8 cut(s)	62, 225, 251, 268, 325, 327, 461, 497
FatI	CATG	2 cut(s)	249, 459
FauNDI	CATATG	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	185, 369, 372
Fsp4HI	GCNGC	3 cut(s)	185, 369, 372
GluI	GCNGC	3 cut(s)	185, 369, 372
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	2 cut(s)	253, 463
HinfI	GANTC	2 cut(s)	142, 406
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	116, 310
Hpy188III	TCNNGA	4 cut(s)	85, 293, 410, 460
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	127, 443
HpyCH4V	TGCA	3 cut(s)	110, 323, 374
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	253, 463
Kpn2I	TCCGGA	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	9 cut(s)	98, 173, 299, 306, 317, 326, 333, 360, 423
Lsp1109I	GCAGC	3 cut(s)	171, 355, 358
MabI	ACCWGGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	4 cut(s)	61, 68, 131, 212
MflI	RGATCY	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	5 cut(s)	36, 263, 356, 384, 399
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	3 cut(s)	35, 387, 453
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	2 cut(s)	253, 463
NlaIV	GGNNCC	1 cut(s)	318
PagI	TCATGA	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	142, 406
PkrI	GCNGC	3 cut(s)	186, 370, 373
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	290, 310
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	429
RsaI	GTAC	5 cut(s)	20, 248, 467, 486, 493
RsaNI	GTAC	5 cut(s)	19, 247, 466, 485, 492
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	35, 387, 453
SatI	GCNGC	3 cut(s)	185, 369, 372
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	2 cut(s)	290, 310
ScaI	AGTACT	2 cut(s)	467, 493
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	9 cut(s)	17, 48, 69, 301, 308, 315, 336, 370, 453
SexAI	ACCWGGT	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	2 cut(s)	290, 310
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	36, 263, 356, 384, 399
SsiI	CCGC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	312
TasI	AATT	5 cut(s)	36, 263, 356, 384, 399
TatI	WGTACW	4 cut(s)	18, 465, 484, 491
TfiI	GAWTC	2 cut(s)	142, 406
Tru1I	TTAA	3 cut(s)	35, 387, 453
Tru9I	TTAA	3 cut(s)	35, 387, 453
TseI	GCWGC	3 cut(s)	184, 368, 371
TspDTI	ATGAA	4 cut(s)	24, 192, 448, 476
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	290, 310
XapI	RAATTY	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	141
ZrmI	AGTACT	2 cut(s)	467, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.