Rw5G030360

Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
48060031 .. 48069819
9789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030360.1

Sequence Viewer

Length: 1473 bp
ATGGTCGGCGACGAAGACCAGAAGTTTGTGGAACTTGGCAAGTTTTCGACTTCTTTGAAATCTCCAGAACCATGGGAAAATTCCAATCATCCATTATTTCTCCACCATTCGGATCAGCTTGGCGCAGTACTTAAGTCACAACCTTTGGTGGAAGACATTACACAACATGGTTTTATGCCACCAAGCGAATCATACATCAAACTAGTTGCATCAACACACCACAACAAAATGGTGTTGTTGAACGCAAGCATAGGCATTTGCTCAATGTTGCACAAGCTCTACTCTTTCAAGCCAATCTTCCAAAGCATTTTTGGGGGGATGCCATTCTCACATCAACCTACCTTATCAATCGCACACCCACACACCTCCTACAAGGTAAAACTGCATTCGATAAATTGTTCCACAAGGCACCAAATTATTCTCATTTACGAGTTTTTAGATGTTTGTCTTCGCTGGGTTGCAAGGGCGTTACCCTTGCTTCTCTCATATACAAGGTATCCCACTGCCAATATACTATCTTATCTCTGTATCTATCCCTGCTTATTTTTTCATTTGTCAGACCTGGTGCCTGCCTATGTTCGACTTCTTCGCGATAATGAGGCTGAGGTGCGGATTGCTGCTGCAGGAAAAGTAACCAAGTTTTGCCGAATTTTGGACCCAGAACTTGCCGTTCAGCAAATCCTACCATTTGTTAAGGAATTGTCAACAGATTCATCCCAGCACGTTCGCTCTGCATTGGCTTCAGTGATAATGGGAATGGCACCAGTTTTAGGAAAGGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTCTCAAAGATGAGTTTCCAGATGTCCGGCTGAACATTATTAGCAAGCTTGATCAAGTCAACCAGGGAATTGGAATTGATCTGCTGTCCCAGTCTCTACTGCCAGCAATTGTGGAACTGGCAGAGGATAGACATTGGAGGGTTCGGCTTGCGATAATAGAATATATCCCTTTATTGGCAAGTCAGTTGGGTGTGGGGTTTTTCGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGGTCCTGATTGGGCCATGCAGCATATAGTCCCACAGGTTTTGGAAATGATTAACAACCCTCACTATTTGTATCGGATGACCATTCTACATGCAATTTCCCTACTTGCCCCTGTTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTGGTTATCACTGCATCAAAAGATAGTATATTTGTTATTAGGTATAGTTTAGATAGATTGGGAAATCCTGTAATGCCTATAGGTACGACAGTTTTCTGGTATTGTCTGATTCATGTATCAGACGGCATTGAGATAGACAACAGCAAACCTTATACTCAGACGACAGTGAAAAACTGTCGTCTGATTGAAAAATTGGTGTAG
Functional Annotation

Protein Analysis

490

Amino Acids

55.24

Weight (kDa)

6.67

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPP2R1A-like_HEAT PF22646 186 - 258 4.4e-28 PPP2R1A-like HEAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 408, 565, 760
AccII CGCG 1 cut(s) 591
AciI CCGC 1 cut(s) 610
AclWI GGATC 2 cut(s) 120, 1249
AcsI RAATTY 3 cut(s) 79, 648, 1118
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 2 cut(s) 129, 1357
AfiI CCNNNNNNNGG 6 cut(s) 109, 652, 770, 991, 1237, 1238
AflII CTTAAG 1 cut(s) 131
AgeI ACCGGT 1 cut(s) 1270
AgsI TTSAA 4 cut(s) 58, 241, 289, 1460
AhlI ACTAGT 1 cut(s) 202
AjnI CCWGG 2 cut(s) 561, 879
AluBI AGCT 5 cut(s) 118, 277, 865, 1030, 1088
AluI AGCT 5 cut(s) 118, 277, 865, 1030, 1088
Alw26I GTCTC 1 cut(s) 915
AlwI GGATC 2 cut(s) 120, 1249
AoxI GGCC 1 cut(s) 1134
ApeKI GCWGC 6 cut(s) 617, 620, 799, 1085, 1088, 1141
ApoI RAATTY 3 cut(s) 79, 648, 1118
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AsiGI ACCGGT 1 cut(s) 1270
AspLEI GCGC 2 cut(s) 125, 1107
AspS9I GGNCC 3 cut(s) 655, 1124, 1134
AvaII GGWCC 2 cut(s) 655, 1124
BaeI ACNNNNGTAYC 2 cut(s) 1347, 1380
BanI GGYRCC 3 cut(s) 408, 565, 760
BbsI GAAGAC 3 cut(s) 21, 159, 440
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 6 cut(s) 604, 607, 786, 1075, 1097, 1153
BceAI ACGGC 2 cut(s) 653, 1411
BciT130I CCWGG 2 cut(s) 563, 881
BciVI GTATCC 1 cut(s) 507
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 1 cut(s) 915
BcuI ACTAGT 1 cut(s) 202
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 2 cut(s) 621, 1350
BfoI RGCGCY 1 cut(s) 1108
BfrI CTTAAG 1 cut(s) 131
BfuI GTATCC 1 cut(s) 507
BisI GCNGC 6 cut(s) 618, 621, 800, 1086, 1089, 1142
BlsI GCNGC 6 cut(s) 619, 622, 801, 1087, 1090, 1143
BmcAI AGTACT 1 cut(s) 129
Bme1390I CCNGG 2 cut(s) 563, 881
Bme18I GGWCC 2 cut(s) 655, 1124
BmgT120I GGNCC 3 cut(s) 655, 1124, 1134
BmiI GGNNCC 4 cut(s) 410, 567, 657, 762
BmrFI CCNGG 2 cut(s) 563, 881
BmrI ACTGGG 1 cut(s) 901
BmsI GCATC 5 cut(s) 218, 309, 769, 1072, 1295
BmuI ACTGGG 1 cut(s) 901
BpiI GAAGAC 3 cut(s) 21, 159, 440
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 603
BsaAI YACGTR 1 cut(s) 1079
BsaJI CCNNGG 2 cut(s) 71, 880
BsaWI WCCGGW 1 cut(s) 1270
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 652, 770, 991, 1237, 1238
Bse118I RCCGGY 1 cut(s) 1270
Bse1I ACTGG 3 cut(s) 764, 907, 939
BseBI CCWGG 2 cut(s) 563, 881
BseDI CCNNGG 2 cut(s) 71, 880
BseGI GGATG 5 cut(s) 88, 324, 713, 784, 1203
BseLI CCNNNNNNNGG 6 cut(s) 109, 652, 770, 991, 1237, 1238
BseMII CTCAG 2 cut(s) 594, 1442
BseNI ACTGG 3 cut(s) 764, 907, 939
BseXI GCAGC 6 cut(s) 604, 607, 786, 1075, 1097, 1153
BseYI CCCAGC 2 cut(s) 453, 717
Bsh1236I CGCG 1 cut(s) 591
BshFI GGCC 1 cut(s) 1136
BshNI GGYRCC 3 cut(s) 408, 565, 760
BshTI ACCGGT 1 cut(s) 1270
BsiSI CCGG 2 cut(s) 844, 1271
BslFI GGGAC 2 cut(s) 889, 1136
BslI CCNNNNNNNGG 6 cut(s) 109, 652, 770, 991, 1237, 1238
BsmAI GTCTC 1 cut(s) 915
BsmFI GGGAC 2 cut(s) 889, 1136
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 1 cut(s) 1136
Bsp143I GATC 4 cut(s) 112, 868, 895, 1241
Bsp19I CCATGG 1 cut(s) 71
Bsp68I TCGCGA 1 cut(s) 591
BspACI CCGC 1 cut(s) 610
BspANI GGCC 1 cut(s) 1136
BspCNI CTCAG 2 cut(s) 595, 1441
BspFNI CGCG 1 cut(s) 591
BspLI GGNNCC 4 cut(s) 410, 567, 657, 762
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 2 cut(s) 120, 1249
BspT107I GGYRCC 3 cut(s) 408, 565, 760
BspTI CTTAAG 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 1270
BsrI ACTGG 3 cut(s) 764, 907, 939
BssAI RCCGGY 1 cut(s) 1270
BssECI CCNNGG 2 cut(s) 71, 880
BssMI GATC 4 cut(s) 112, 868, 895, 1241
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 563, 881
Bst4CI ACNGT 3 cut(s) 1363, 1438, 1448
Bst6I CTCTTC 1 cut(s) 822
BstAFI CTTAAG 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 799
BstBAI YACGTR 1 cut(s) 1079
BstC8I GCNNGC 6 cut(s) 247, 570, 863, 921, 966, 1046
BstDEI CTNAG 2 cut(s) 603, 1428
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 5 cut(s) 88, 324, 713, 784, 1203
BstFNI CGCG 1 cut(s) 591
BstH2I RGCGCY 1 cut(s) 1108
BstHHI GCGC 2 cut(s) 125, 1107
BstKTI GATC 4 cut(s) 115, 871, 898, 1244
BstMAI GTCTC 1 cut(s) 915
BstMBI GATC 4 cut(s) 112, 868, 895, 1241
BstMWI GCNNNNNNNGC 1 cut(s) 799
BstNI CCWGG 2 cut(s) 563, 881
BstNSI RCATGY 2 cut(s) 1048, 1214
BstSCI CCNGG 2 cut(s) 561, 879
BstSFI CTRYAG 2 cut(s) 621, 1350
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 6 cut(s) 604, 607, 786, 1075, 1097, 1153
BstV2I GAAGAC 3 cut(s) 21, 159, 440
BstXI CCANNNNNNTGG 2 cut(s) 72, 887
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 1 cut(s) 1136
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 5 cut(s) 88, 324, 713, 784, 1203
BtsI GCAGTG 3 cut(s) 501, 1055, 1281
BtsIMutI CAGTG 5 cut(s) 501, 750, 1055, 1281, 1443
BtuMI TCGCGA 1 cut(s) 591
Cac8I GCNNGC 6 cut(s) 247, 570, 863, 921, 966, 1046
CfoI GCGC 2 cut(s) 125, 1107
Cfr10I RCCGGY 1 cut(s) 1270
Cfr13I GGNCC 3 cut(s) 655, 1124, 1134
CsiI ACCWGGT 1 cut(s) 561
Csp6I GTAC 2 cut(s) 128, 1356
CspAI ACCGGT 1 cut(s) 1270
CspCI CAANNNNNGTGG 2 cut(s) 1143, 1178
CviAII CATG 6 cut(s) 72, 167, 1045, 1138, 1211, 1385
CviQI GTAC 2 cut(s) 128, 1356
DdeI CTNAG 2 cut(s) 603, 1428
DpnI GATC 4 cut(s) 114, 870, 897, 1243
DpnII GATC 4 cut(s) 112, 868, 895, 1241
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Eco130I CCWWGG 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 655, 1124
Eco57I CTGAAG 1 cut(s) 726
EcoRII CCWGG 2 cut(s) 561, 879
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 6 cut(s) 75, 170, 1048, 1141, 1214, 1388
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FaqI GGGAC 2 cut(s) 889, 1136
FatI CATG 6 cut(s) 71, 166, 1044, 1137, 1210, 1384
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 6 cut(s) 618, 621, 800, 1086, 1089, 1142
FokI GGATG 5 cut(s) 75, 331, 700, 791, 1210
Fsp4HI GCNGC 6 cut(s) 618, 621, 800, 1086, 1089, 1142
FspBI CTAG 1 cut(s) 203
GlaI GCGC 2 cut(s) 124, 1106
GluI GCNGC 6 cut(s) 618, 621, 800, 1086, 1089, 1142
GsaI CCCAGC 2 cut(s) 457, 721
GsuI CTGGAG 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 1108
HaeIII GGCC 1 cut(s) 1136
HapII CCGG 2 cut(s) 844, 1271
HhaI GCGC 2 cut(s) 125, 1107
Hin1II CATG 6 cut(s) 75, 170, 1048, 1141, 1214, 1388
Hin6I GCGC 2 cut(s) 123, 1105
HinP1I GCGC 2 cut(s) 123, 1105
HincII GTYRAC 2 cut(s) 705, 877
HindII GTYRAC 2 cut(s) 705, 877
HindIII AAGCTT 2 cut(s) 863, 1028
HinfI GANTC 3 cut(s) 188, 710, 1381
HpaII CCGG 2 cut(s) 844, 1271
Hpy166II GTNNAC 3 cut(s) 705, 877, 1069
Hpy188I TCNGA 8 cut(s) 112, 559, 1197, 1246, 1380, 1393, 1431, 1455
Hpy188III TCNNGA 4 cut(s) 65, 590, 836, 1127
Hpy8I GTNNAC 3 cut(s) 705, 877, 1069
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 3 cut(s) 1363, 1438, 1448
HpyCH4IV ACGT 2 cut(s) 723, 1078
HpyF10VI GCNNNNNNNGC 1 cut(s) 799
HpyF3I CTNAG 2 cut(s) 603, 1428
HpySE526I ACGT 2 cut(s) 723, 1078
Hsp92II CATG 6 cut(s) 75, 170, 1048, 1141, 1214, 1388
HspAI GCGC 2 cut(s) 123, 1105
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 4 cut(s) 112, 868, 895, 1241
Lsp1109I GCAGC 6 cut(s) 604, 607, 786, 1075, 1097, 1153
LweI GCATC 5 cut(s) 218, 309, 769, 1072, 1295
MabI ACCWGGT 1 cut(s) 561
MaeI CTAG 1 cut(s) 203
MaeII ACGT 2 cut(s) 723, 1078
MaeIII GTNAC 3 cut(s) 135, 468, 631
MalI GATC 4 cut(s) 114, 870, 897, 1243
MboI GATC 4 cut(s) 112, 868, 895, 1241
MboII GAAGA 7 cut(s) 26, 164, 289, 440, 578, 809, 1127
MfeI CAATTG 1 cut(s) 924
MnlI CCTC 6 cut(s) 376, 592, 598, 934, 948, 1191
MseI TTAA 4 cut(s) 132, 693, 1055, 1173
MspA1I CMGCKG 1 cut(s) 1088
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 2 cut(s) 844, 1271
MspR9I CCNGG 2 cut(s) 563, 881
MunI CAATTG 1 cut(s) 924
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 2 cut(s) 563, 881
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 1 cut(s) 799
NcoI CCATGG 1 cut(s) 71
NdeII GATC 4 cut(s) 112, 868, 895, 1241
NlaIII CATG 6 cut(s) 75, 170, 1048, 1141, 1214, 1388
NlaIV GGNNCC 4 cut(s) 410, 567, 657, 762
NmuCI GTSAC 1 cut(s) 135
NruI TCGCGA 1 cut(s) 591
NspI RCATGY 2 cut(s) 1048, 1214
PaeI GCATGC 1 cut(s) 1048
PctI GAATGC 1 cut(s) 385
PfeI GAWTC 3 cut(s) 188, 710, 1381
PinAI ACCGGT 1 cut(s) 1270
PkrI GCNGC 6 cut(s) 619, 622, 801, 1087, 1090, 1143
Ppu21I YACGTR 1 cut(s) 1079
Psp6I CCWGG 2 cut(s) 561, 879
PspFI CCCAGC 2 cut(s) 453, 717
PspGI CCWGG 2 cut(s) 561, 879
PspN4I GGNNCC 4 cut(s) 410, 567, 657, 762
PspPI GGNCC 3 cut(s) 655, 1124, 1134
PstI CTGCAG 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 1088
RruI TCGCGA 1 cut(s) 591
RsaI GTAC 2 cut(s) 129, 1357
RsaNI GTAC 2 cut(s) 128, 1356
SaqAI TTAA 4 cut(s) 132, 693, 1055, 1173
SatI GCNGC 6 cut(s) 618, 621, 800, 1086, 1089, 1142
Sau3AI GATC 4 cut(s) 112, 868, 895, 1241
Sau96I GGNCC 3 cut(s) 655, 1124, 1134
ScaI AGTACT 1 cut(s) 129
ScrFI CCNGG 2 cut(s) 563, 881
SexAI ACCWGGT 1 cut(s) 561
SfaNI GCATC 5 cut(s) 218, 309, 769, 1072, 1295
SfcI CTRYAG 2 cut(s) 621, 1350
SinI GGWCC 2 cut(s) 655, 1124
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 202
SphI GCATGC 1 cut(s) 1048
SsiI CCGC 1 cut(s) 610
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 561, 879
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 3 cut(s) 1363, 1438, 1448
TaiI ACGT 2 cut(s) 726, 1081
TaqI TCGA 4 cut(s) 47, 389, 580, 1020
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 3 cut(s) 188, 710, 1381
Tru1I TTAA 4 cut(s) 132, 693, 1055, 1173
Tru9I TTAA 4 cut(s) 132, 693, 1055, 1173
TscAI CASTG 5 cut(s) 508, 750, 1055, 1288, 1443
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 6 cut(s) 617, 620, 799, 1085, 1088, 1141
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 3 cut(s) 539, 702, 1373
TspRI CASTG 5 cut(s) 508, 750, 1055, 1288, 1443
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 655, 1124
XapI RAATTY 3 cut(s) 79, 648, 1118
XceI RCATGY 2 cut(s) 1048, 1214
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XspI CTAG 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.