Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Forward (+)

23822813 .. 23835090

Gene Structure 12278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG247100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTCATGGCCATTGGTAGCCTTGTGGCTAATTGTCTTCTTCTTTTTGCTGCGTTCGATTTGGCACTTGGAGTACCACCTTGGACAAGGAGCCCTGTGGTTTCTGTCAACGACGGTCGTTGTGTTTTCATGGCTGATCTGAGGCTGACATCCGATGGTTTGAAGCCGTGGTGGTCTGCGGCAGATCGGCGCGTCTGGATATTGGACCGAGGTCGTGGGGTGGGCGACCGTGGCGAGAGTATCACAGTCGGATTTGATGGTGATCTCTATCTCAAAGGCGGGGCCTTCCTGGATCATGGCTGGTTCACAGCGGCAAGTTATGGTGACCCTGTTCCCGATCTGGGTCTCGCATCTAAGCTCTGGGTTGGTGGTTGGCGGGAGCGCTACAGCGGTGGGAAGCTTGGTTTACATCTTCCTGCTTGCAGCGGCGATCCTTTCTGGCGGGGTTGTGCTCGGTTCCCTGGACACGGAGGGTCTGATCTGGTGGCGAGTACTGACGGCGAGTACTGGCGTCGTGGTTTGGAGGTCGAAGGTGATGGAATAGTGGCACTGACGGCGAGTACCGATGGTGAAGCATCTGGCGGTCTTTGGTTGGAAAATCACCGTAATGCCTTTTCTGACATGTTGCTGCAAGAATATAAGGAGAACCCAGATTATGCACGTTGTGTTGCTATTGTAGCATCTGCATCTTTGAGGGAGATGATAAAACCTGGTGCCTTGGCTATTATTTCACCTATAGCAGTTGGTATTGCGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

252

Amino Acids

27.04

Weight (kDa)

5.23

Isoelectric Point (pI)

28.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	201 - 251	9.3e-10	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	713
AccII	CGCG	1 cut(s)	192
AciI	CCGC	8 cut(s)	179, 279, 311, 376, 390, 426, 442, 582
AclWI	GGATC	2 cut(s)	300, 425
AcoI	YGGCCR	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	511
AdeI	CACNNNGTG	1 cut(s)	665
AfaI	GTAC	4 cut(s)	75, 493, 506, 562
AfeI	AGCGCT	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	341, 467
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	3 cut(s)	288, 460, 709
AluBI	AGCT	2 cut(s)	358, 400
AluI	AGCT	2 cut(s)	358, 400
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	2 cut(s)	300, 425
Aor51HI	AGCGCT	1 cut(s)	383
AoxI	GGCC	2 cut(s)	9, 282
ApeKI	GCWGC	3 cut(s)	50, 423, 628
AspLEI	GCGC	2 cut(s)	192, 384
AspS9I	GGNCC	2 cut(s)	205, 282
AsuHPI	GGTGA	6 cut(s)	272, 335, 545, 581, 593, 723
AvaII	GGWCC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	3 cut(s)	37, 435, 615
BccI	CCATC	4 cut(s)	149, 251, 530, 560
BceAI	ACGGC	3 cut(s)	151, 514, 570
BciT130I	CCWGG	3 cut(s)	290, 462, 711
BcoDI	GTCTC	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	385, 735
BfoI	RGCGCY	1 cut(s)	385
BisI	GCNGC	6 cut(s)	51, 180, 312, 424, 427, 629
BlsI	GCNGC	6 cut(s)	52, 181, 313, 425, 428, 630
BmcAI	AGTACT	2 cut(s)	493, 506
Bme1390I	CCNGG	3 cut(s)	290, 462, 711
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	205, 282
BmiI	GGNNCC	4 cut(s)	92, 283, 458, 715
BmrFI	CCNGG	3 cut(s)	290, 462, 711
BmsI	GCATC	4 cut(s)	359, 584, 689, 695
BoxI	GACNNNNGTC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	29
BsaBI	GATNNNNATC	2 cut(s)	261, 267
BsaHI	GRCGYC	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	6 cut(s)	80, 167, 208, 229, 460, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 467
Bse1I	ACTGG	1 cut(s)	512
Bse8I	GATNNNNATC	2 cut(s)	261, 267
BseBI	CCWGG	3 cut(s)	290, 462, 711
BseDI	CCNNGG	6 cut(s)	80, 167, 208, 229, 460, 717
BseGI	GGATG	1 cut(s)	149
BseJI	GATNNNNATC	2 cut(s)	261, 267
BseLI	CCNNNNNNNGG	2 cut(s)	341, 467
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	512
BseXI	GCAGC	3 cut(s)	37, 435, 615
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	2 cut(s)	118, 229
BshFI	GGCC	2 cut(s)	11, 284
BshNI	GGYRCC	1 cut(s)	713
BsiEI	CGRYCG	2 cut(s)	118, 229
BsiHKAI	GWGCWC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	341, 467
BsmAI	GTCTC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	11, 284
Bso31I	GGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	95, 454
Bsp143I	GATC	7 cut(s)	136, 184, 262, 292, 337, 430, 478
BspACI	CCGC	8 cut(s)	179, 279, 311, 376, 390, 426, 442, 582
BspANI	GGCC	2 cut(s)	11, 284
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	4 cut(s)	92, 283, 458, 715
BspPI	GGATC	2 cut(s)	300, 425
BspT107I	GGYRCC	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	6 cut(s)	80, 167, 208, 229, 460, 717
BssMI	GATC	7 cut(s)	136, 184, 262, 292, 337, 430, 478
BssNI	GRCGYC	1 cut(s)	511
BssT1I	CCWWGG	2 cut(s)	80, 717
Bst2UI	CCWGG	3 cut(s)	290, 462, 711
Bst4CI	ACNGT	4 cut(s)	116, 230, 247, 605
BstACI	GRCGYC	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	140, 354
BstDSI	CCRYGG	2 cut(s)	167, 229
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	2 cut(s)	192, 384
BstKTI	GATC	7 cut(s)	139, 187, 265, 295, 340, 433, 481
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	7 cut(s)	136, 184, 262, 292, 337, 430, 478
BstMCI	CGRYCG	2 cut(s)	118, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 554, 677
BstNI	CCWGG	3 cut(s)	290, 462, 711
BstNSI	RCATGY	1 cut(s)	625
BstPAI	GACNNNNGTC	1 cut(s)	210
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	288, 460, 709
BstSFI	CTRYAG	2 cut(s)	385, 735
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	37, 435, 615
BstV2I	GAAGAC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	11, 284
BtgI	CCRYGG	2 cut(s)	167, 229
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	2 cut(s)	192, 384
Cfr13I	GGNCC	2 cut(s)	205, 282
CseI	GACGC	2 cut(s)	181, 500
CsiI	ACCWGGT	1 cut(s)	709
Csp6I	GTAC	4 cut(s)	74, 492, 505, 561
CviAII	CATG	4 cut(s)	7, 130, 296, 622
CviQI	GTAC	4 cut(s)	74, 492, 505, 561
DdeI	CTNAG	2 cut(s)	140, 354
DpnI	GATC	7 cut(s)	138, 186, 264, 294, 339, 432, 480
DpnII	GATC	7 cut(s)	136, 184, 262, 292, 337, 430, 478
DraIII	CACNNNGTG	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	80, 717
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	205
Eco47III	AGCGCT	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	282
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	288, 460, 709
EcoT14I	CCWWGG	2 cut(s)	80, 717
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	2 cut(s)	80, 717
FaeI	CATG	4 cut(s)	10, 133, 299, 625
FaiI	YATR	8 cut(s)	8, 131, 297, 321, 623, 639, 657, 737
FatI	CATG	4 cut(s)	6, 129, 295, 621
FauI	CCCGC	3 cut(s)	272, 369, 435
Fnu4HI	GCNGC	6 cut(s)	51, 180, 312, 424, 427, 629
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	6 cut(s)	51, 180, 312, 424, 427, 629
GlaI	GCGC	2 cut(s)	191, 383
GluI	GCNGC	6 cut(s)	51, 180, 312, 424, 427, 629
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	2 cut(s)	11, 284
HgaI	GACGC	2 cut(s)	181, 500
HhaI	GCGC	2 cut(s)	192, 384
Hin1I	GRCGYC	1 cut(s)	511
Hin1II	CATG	4 cut(s)	10, 133, 299, 625
Hin6I	GCGC	2 cut(s)	190, 382
HinP1I	GCGC	2 cut(s)	190, 382
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	398
HphI	GGTGA	6 cut(s)	272, 335, 545, 581, 593, 723
Hpy166II	GTNNAC	3 cut(s)	109, 306, 407
Hpy188I	TCNGA	6 cut(s)	141, 154, 251, 478, 619, 758
Hpy188III	TCNNGA	2 cut(s)	196, 335
Hpy8I	GTNNAC	3 cut(s)	109, 306, 407
Hpy99I	CGWCG	2 cut(s)	116, 516
HpyAV	CCTTC	2 cut(s)	295, 524
HpyCH4III	ACNGT	4 cut(s)	116, 230, 247, 605
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	4 cut(s)	423, 631, 659, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 554, 677
HpyF3I	CTNAG	2 cut(s)	140, 354
HpySE526I	ACGT	1 cut(s)	661
Hsp92I	GRCGYC	1 cut(s)	511
Hsp92II	CATG	4 cut(s)	10, 133, 299, 625
HspAI	GCGC	2 cut(s)	190, 382
Kzo9I	GATC	7 cut(s)	136, 184, 262, 292, 337, 430, 478
LmnI	GCTCC	2 cut(s)	90, 379
Lsp1109I	GCAGC	3 cut(s)	37, 435, 615
LweI	GCATC	4 cut(s)	359, 584, 689, 695
MabI	ACCWGGT	1 cut(s)	709
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	7 cut(s)	138, 186, 264, 294, 339, 432, 480
MboI	GATC	7 cut(s)	136, 184, 262, 292, 337, 430, 478
MboII	GAAGA	3 cut(s)	29, 32, 404
MhlI	GDGCHC	2 cut(s)	95, 454
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	1 cut(s)	31
MluNI	TGGCCA	1 cut(s)	11
MmeI	TCCRAC	2 cut(s)	229, 573
MnlI	CCTC	5 cut(s)	135, 203, 464, 517, 687
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	606
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	3 cut(s)	311, 390, 426
MspR9I	CCNGG	3 cut(s)	290, 462, 711
MvaI	CCWGG	3 cut(s)	290, 462, 711
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	231, 554, 677
NdeII	GATC	7 cut(s)	136, 184, 262, 292, 337, 430, 478
NlaIII	CATG	4 cut(s)	10, 133, 299, 625
NlaIV	GGNNCC	4 cut(s)	92, 283, 458, 715
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	625
PciI	ACATGT	1 cut(s)	621
PfoI	TCCNGGA	1 cut(s)	288
PkrI	GCNGC	6 cut(s)	52, 181, 313, 425, 428, 630
PscI	ACATGT	1 cut(s)	621
PshAI	GACNNNNGTC	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	288, 460, 709
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	3 cut(s)	288, 460, 709
PspN4I	GGNNCC	4 cut(s)	92, 283, 458, 715
PspPI	GGNCC	2 cut(s)	205, 282
RsaI	GTAC	4 cut(s)	75, 493, 506, 562
RsaNI	GTAC	4 cut(s)	74, 492, 505, 561
RseI	CAYNNNNRTG	1 cut(s)	606
SatI	GCNGC	6 cut(s)	51, 180, 312, 424, 427, 629
Sau3AI	GATC	7 cut(s)	136, 184, 262, 292, 337, 430, 478
Sau96I	GGNCC	2 cut(s)	205, 282
ScaI	AGTACT	2 cut(s)	493, 506
ScrFI	CCNGG	3 cut(s)	290, 462, 711
SduI	GDGCHC	2 cut(s)	95, 454
SetI	ASST	9 cut(s)	82, 214, 360, 402, 528, 535, 664, 712, 736
SexAI	ACCWGGT	1 cut(s)	709
SfaNI	GCATC	4 cut(s)	359, 584, 689, 695
SfcI	CTRYAG	2 cut(s)	385, 735
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	606
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	8 cut(s)	179, 279, 311, 376, 390, 426, 442, 582
StyD4I	CCNGG	3 cut(s)	288, 460, 709
StyI	CCWWGG	2 cut(s)	80, 717
TaaI	ACNGT	4 cut(s)	116, 230, 247, 605
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	2 cut(s)	57, 528
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	31
TatI	WGTACW	2 cut(s)	491, 504
TauI	GCSGC	3 cut(s)	182, 314, 429
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	3 cut(s)	50, 423, 628
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	625
ZrmI	AGTACT	2 cut(s)	493, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.