Rh5CG320500

pyrophosphate-energized membrane proton pump

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
35505820 .. 35508811
2992 bp
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UTR
Exon/CDS
Intron
Rh5CG320500.1

Sequence Viewer

Length: 348 bp
ATGTTTTGCATTCCTTTTAATAATGCCTTTTCTAACATGTTTCTGCAGGAATATAAGGAGAAGCCAGGTTATGCATGTTGTGTTGCTATTGTAGCATCGGCATCTTTGAGGGAGATGATAAAACCTGGTGCCTTGGCTATTGTTTCACCTATAGCAGTTGGTATTGCGTTTTGGATATTTGGATACTATACTGGGCAGCCTATACTTGGTGCTAAAGTTGTGGCTTCCATGCTGATGTTTGAAACAGTGTCTGGTATTCTCATGGCTCTTTTCCTGAACACGGTAGGTGGTGCCTGGGATAACGCAAAGAAGTACATCGAGACGGGTTCTCGGAGGCAAAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.61

Weight (kDa)

9.3

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
H_PPase PF03030 15 - 113 1.1e-27 Inorganic H+ pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 128, 290
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 206, 280
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 3 cut(s) 64, 124, 293
Alw26I GTCTC 1 cut(s) 314
AlwNI CAGNNNCTG 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 138
BanI GGYRCC 2 cut(s) 128, 290
BbvI GCAGC 1 cut(s) 208
BciT130I CCWGG 3 cut(s) 66, 126, 295
BciVI GTATCC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 314
BfmI CTRYAG 2 cut(s) 44, 150
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 3 cut(s) 66, 126, 295
BmiI GGNNCC 2 cut(s) 130, 292
BmrFI CCNGG 3 cut(s) 66, 126, 295
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 104, 110
BmuI ACTGGG 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 132, 294
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 280
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 3 cut(s) 66, 126, 295
BseDI CCNNGG 2 cut(s) 132, 294
BseLI CCNNNNNNNGG 2 cut(s) 206, 280
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 208
BshNI GGYRCC 2 cut(s) 128, 290
BslI CCNNNNNNNGG 2 cut(s) 206, 280
BsmAI GTCTC 1 cut(s) 314
BsmBI CGTCTC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 130, 292
BspMAI CTGCAG 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 128, 290
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 132, 294
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 3 cut(s) 66, 126, 295
Bst4CI ACNGT 2 cut(s) 247, 283
BstMAI GTCTC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 3 cut(s) 66, 126, 295
BstNSI RCATGY 2 cut(s) 40, 78
BstSCI CCNGG 3 cut(s) 64, 124, 293
BstSFI CTRYAG 2 cut(s) 44, 150
BstV1I GCAGC 1 cut(s) 208
BsuI GTATCC 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 252
CaiI CAGNNNCTG 1 cut(s) 251
CsiI ACCWGGT 1 cut(s) 124
Csp6I GTAC 1 cut(s) 313
CviAII CATG 4 cut(s) 37, 75, 229, 262
CviJI RGCY 5 cut(s) 64, 137, 199, 224, 266
CviKI_1 RGCY 5 cut(s) 64, 137, 199, 224, 266
CviQI GTAC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 132
EcoRII CCWGG 3 cut(s) 64, 124, 293
EcoT14I CCWWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 4 cut(s) 40, 78, 232, 265
FaiI YATR 9 cut(s) 38, 54, 72, 76, 152, 189, 203, 230, 263
FatI CATG 4 cut(s) 36, 74, 228, 261
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 197
Hin1II CATG 4 cut(s) 40, 78, 232, 265
HphI GGTGA 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 2 cut(s) 274, 319
HpyCH4III ACNGT 2 cut(s) 247, 283
HpyCH4V TGCA 3 cut(s) 9, 46, 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Hsp92II CATG 4 cut(s) 40, 78, 232, 265
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 104, 110
MabI ACCWGGT 1 cut(s) 124
MnlI CCTC 2 cut(s) 102, 327
Mph1103I ATGCAT 1 cut(s) 76
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 233
MspR9I CCNGG 3 cut(s) 66, 126, 295
Mva1269I GAATGC 1 cut(s) 9
MvaI CCWGG 3 cut(s) 66, 126, 295
MwoI GCNNNNNNNGC 1 cut(s) 92
NlaIII CATG 4 cut(s) 40, 78, 232, 265
NlaIV GGNNCC 2 cut(s) 130, 292
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 2 cut(s) 40, 78
PciI ACATGT 1 cut(s) 36
PctI GAATGC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 198
PscI ACATGT 1 cut(s) 36
Psp6I CCWGG 3 cut(s) 64, 124, 293
PspGI CCWGG 3 cut(s) 64, 124, 293
PspN4I GGNNCC 2 cut(s) 130, 292
PstI CTGCAG 1 cut(s) 48
PstNI CAGNNNCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 66, 126, 295
SetI ASST 4 cut(s) 70, 127, 151, 289
SexAI ACCWGGT 1 cut(s) 124
SfaNI GCATC 2 cut(s) 104, 110
SfcI CTRYAG 2 cut(s) 44, 150
SmiMI CAYNNNNRTG 1 cut(s) 233
StyD4I CCNGG 3 cut(s) 64, 124, 293
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 247, 283
TaqI TCGA 1 cut(s) 318
TatI WGTACW 1 cut(s) 312
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 252
TseI GCWGC 1 cut(s) 196
TspRI CASTG 1 cut(s) 252
XceI RCATGY 2 cut(s) 40, 78
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.