Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000159

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

463200 .. 466892

Gene Structure 3693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_159G00432830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGACAAGGACAAGAGCCGTACCGATCTGCTCGCTGCTGGCCGTAAAAAGGAATTGTCAACAGATTCATCCCAGCACGTTCGCTCTGCATTGGCTTCAGTGATAATGGGAATGGCACCAGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTCTCAAAGATGAGTTTCCAGATGTCCGGCTGAACATTATTAGCAAGCTTGATCAAGTCAACCAGGGAATTGGAATTGATCTGCTGTCCCAGTCTCTACTGCCAGCAATTGTGGAACTGGCAGAGGATAGACATTGGAGGGTTCAGCTTGCGATAATAGAATATATCCCTTTATTGGCAAGTCAGTTGGGTGTGGGGTTTTTCGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGGTCCTGATTGGGCCATGCAGCATATAGTCCCACAGGTTTTGGAAATGATTAATAACCCTCACTATTTGTATCGGATGACCATTCTACATGCAATTTCCCTACTTGCCCCTGTTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTGGTTATCACTGCATCAAAAGATAGGTATTGCGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGGCTGCAATTACAGGAGACATAGTGGGAGACCCATTCAAAGACACAGCTAGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGTTGGTCATGGCTCCTGTCTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

272

Amino Acids

30.12

Weight (kDa)

6.05

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPP2R1A-like_HEAT	PF22646	16 - 40	8.6e-07	PPP2R1A-like HEAT repeat
H_PPase	PF03030	225 - 267	2.3e-15	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AccIII	TCCGGA	2 cut(s)	652, 671
AclWI	GGATC	1 cut(s)	592
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	4 cut(s)	49, 334, 580, 581
AgeI	ACCGGT	1 cut(s)	613
AgsI	TTSAA	1 cut(s)	736
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	5 cut(s)	208, 307, 373, 431, 746
AluI	AGCT	5 cut(s)	208, 307, 373, 431, 746
Alw26I	GTCTC	3 cut(s)	258, 708, 720
AlwI	GGATC	1 cut(s)	592
Aor13HI	TCCGGA	2 cut(s)	652, 671
AoxI	GGCC	2 cut(s)	40, 477
ApeKI	GCWGC	6 cut(s)	35, 142, 428, 431, 484, 701
ApoI	RAATTY	1 cut(s)	461
AseI	ATTAAT	1 cut(s)	516
AsiGI	ACCGGT	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	2 cut(s)	467, 477
AvaII	GGWCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	115
BbvI	GCAGC	6 cut(s)	22, 129, 418, 440, 496, 688
BceAI	ACGGC	2 cut(s)	3, 27
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	657
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	258, 708, 720
BfaI	CTAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	451
BfuI	GTATCC	1 cut(s)	657
BisI	GCNGC	6 cut(s)	36, 143, 429, 432, 485, 702
BlsI	GCNGC	6 cut(s)	37, 144, 430, 433, 486, 703
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	2 cut(s)	467, 477
BmiI	GGNNCC	2 cut(s)	117, 804
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	3 cut(s)	112, 415, 638
BmuI	ACTGGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	3 cut(s)	613, 652, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 334, 580, 581
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	2 cut(s)	250, 282
BseAI	TCCGGA	2 cut(s)	652, 671
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	2 cut(s)	68, 546
BseLI	CCNNNNNNNGG	4 cut(s)	49, 334, 580, 581
BseNI	ACTGG	2 cut(s)	250, 282
BseXI	GCAGC	6 cut(s)	22, 129, 418, 440, 496, 688
BseYI	CCCAGC	1 cut(s)	72
BshFI	GGCC	2 cut(s)	42, 479
BshNI	GGYRCC	1 cut(s)	115
BshTI	ACCGGT	1 cut(s)	613
BsiSI	CCGG	4 cut(s)	187, 614, 653, 672
BslFI	GGGAC	2 cut(s)	232, 479
BslI	CCNNNNNNNGG	4 cut(s)	49, 334, 580, 581
BsmAI	GTCTC	3 cut(s)	258, 708, 720
BsmFI	GGGAC	2 cut(s)	232, 479
BsnI	GGCC	2 cut(s)	42, 479
Bso31I	GGTCTC	1 cut(s)	720
Bsp13I	TCCGGA	2 cut(s)	652, 671
Bsp143I	GATC	4 cut(s)	25, 211, 238, 584
BspANI	GGCC	2 cut(s)	42, 479
BspEI	TCCGGA	2 cut(s)	652, 671
BspLI	GGNNCC	2 cut(s)	117, 804
BspPI	GGATC	1 cut(s)	592
BspT107I	GGYRCC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	250, 282
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	4 cut(s)	25, 211, 238, 584
Bst2UI	CCWGG	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	2 cut(s)	122, 142
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	7 cut(s)	33, 40, 206, 264, 309, 389, 780
BstF5I	GGATG	2 cut(s)	68, 546
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	4 cut(s)	28, 214, 241, 587
BstMAI	GTCTC	3 cut(s)	258, 708, 720
BstMBI	GATC	4 cut(s)	25, 211, 238, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 142
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	391, 557
BstSCI	CCNGG	1 cut(s)	222
BstV1I	GCAGC	6 cut(s)	22, 129, 418, 440, 496, 688
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	2 cut(s)	42, 479
BtsCI	GGATG	2 cut(s)	68, 546
BtsI	GCAGTG	2 cut(s)	398, 624
BtsIMutI	CAGTG	3 cut(s)	105, 398, 624
Cac8I	GCNNGC	7 cut(s)	33, 40, 206, 264, 309, 389, 780
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	2 cut(s)	467, 477
Csp6I	GTAC	1 cut(s)	21
CspAI	ACCGGT	1 cut(s)	613
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	5 cut(s)	388, 481, 554, 761, 799
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	4 cut(s)	27, 213, 240, 586
DpnII	GATC	4 cut(s)	25, 211, 238, 584
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	5 cut(s)	391, 484, 557, 764, 802
FaqI	GGGAC	2 cut(s)	232, 479
FatI	CATG	5 cut(s)	387, 480, 553, 760, 798
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	6 cut(s)	36, 143, 429, 432, 485, 702
FokI	GGATG	2 cut(s)	55, 553
Fsp4HI	GCNGC	6 cut(s)	36, 143, 429, 432, 485, 702
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	6 cut(s)	36, 143, 429, 432, 485, 702
GsaI	CCCAGC	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	42, 479
HapII	CCGG	4 cut(s)	187, 614, 653, 672
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	5 cut(s)	391, 484, 557, 764, 802
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	2 cut(s)	60, 220
HindII	GTYRAC	2 cut(s)	60, 220
HindIII	AAGCTT	2 cut(s)	206, 371
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	4 cut(s)	187, 614, 653, 672
Hpy166II	GTNNAC	3 cut(s)	60, 220, 412
Hpy188I	TCNGA	2 cut(s)	540, 589
Hpy188III	TCNNGA	4 cut(s)	179, 470, 653, 672
Hpy8I	GTNNAC	3 cut(s)	60, 220, 412
HpyAV	CCTTC	1 cut(s)	762
HpyCH4IV	ACGT	2 cut(s)	78, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 142
HpySE526I	ACGT	2 cut(s)	78, 421
Hsp92II	CATG	5 cut(s)	391, 484, 557, 764, 802
HspAI	GCGC	1 cut(s)	448
Kpn2I	TCCGGA	2 cut(s)	652, 671
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	25, 211, 238, 584
LmnI	GCTCC	1 cut(s)	808
Lsp1109I	GCAGC	6 cut(s)	22, 129, 418, 440, 496, 688
LweI	GCATC	3 cut(s)	112, 415, 638
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	2 cut(s)	78, 421
MalI	GATC	4 cut(s)	27, 213, 240, 586
MboI	GATC	4 cut(s)	25, 211, 238, 584
MboII	GAAGA	2 cut(s)	152, 470
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	8 cut(s)	53, 228, 234, 267, 461, 558, 591, 705
MnlI	CCTC	4 cut(s)	277, 291, 534, 668
MroI	TCCGGA	2 cut(s)	652, 671
MseI	TTAA	3 cut(s)	398, 516, 771
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	4 cut(s)	187, 614, 653, 672
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	122, 142
NdeII	GATC	4 cut(s)	25, 211, 238, 584
NlaIII	CATG	5 cut(s)	391, 484, 557, 764, 802
NlaIV	GGNNCC	2 cut(s)	117, 804
NspI	RCATGY	2 cut(s)	391, 557
PaeI	GCATGC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	613
PkrI	GCNGC	6 cut(s)	37, 144, 430, 433, 486, 703
Ppu21I	YACGTR	1 cut(s)	422
PshBI	ATTAAT	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	117, 804
PspPI	GGNCC	2 cut(s)	467, 477
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	398, 516, 771
SatI	GCNGC	6 cut(s)	36, 143, 429, 432, 485, 702
Sau3AI	GATC	4 cut(s)	25, 211, 238, 584
Sau96I	GGNCC	2 cut(s)	467, 477
ScrFI	CCNGG	1 cut(s)	224
SfaNI	GCATC	3 cut(s)	112, 415, 638
SinI	GGWCC	1 cut(s)	467
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	8 cut(s)	53, 228, 234, 267, 461, 558, 591, 705
SspMI	CTAG	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	2 cut(s)	81, 424
TaqI	TCGA	1 cut(s)	363
TasI	AATT	8 cut(s)	53, 228, 234, 267, 461, 558, 591, 705
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	3 cut(s)	398, 516, 771
Tru9I	TTAA	3 cut(s)	398, 516, 771
TscAI	CASTG	3 cut(s)	105, 398, 631
TseI	GCWGC	6 cut(s)	35, 142, 428, 431, 484, 701
TspDTI	ATGAA	3 cut(s)	57, 749, 803
TspRI	CASTG	3 cut(s)	105, 398, 631
VpaK11BI	GGWCC	1 cut(s)	467
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	2 cut(s)	391, 557
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.