Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Forward (+)

43433439 .. 43434089

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTTGCAGCAGGAATATAAGGAGAAGCCAGATTATGCACGTTGTGTTGCTATTGTAGCATCCGCATCTTTGAGGGAGATGATAAAACCTGGTGCCTTGGCTATTATTTCACCTATAGCAGTTGAGTGGGAGACCCATTCAAAGACACAGCGAGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGCTGGTCATGGCTCCTGTCTTTCTCTCGAGTAGTTTATAACAATTCCGGGTTTTCCGGTTTATCGGTCCCGAGTGCACGTAAACTATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

96

Amino Acids

10.94

Weight (kDa)

9.15

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	5 - 46	2.5e-09	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	125, 147
Alw44I	GTGCAC	1 cut(s)	270
Ama87I	CYCGRG	2 cut(s)	222, 265
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	102
AvaI	CYCGRG	2 cut(s)	222, 265
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	125, 147
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	90, 244
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	2 cut(s)	222, 265
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	3 cut(s)	94, 209, 264
BmrFI	CCNGG	2 cut(s)	90, 244
BmsI	GCATC	2 cut(s)	68, 74
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	2 cut(s)	125, 147
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	2 cut(s)	222, 265
BsiSI	CCGG	2 cut(s)	243, 252
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	125, 147
BsmFI	GGGAC	1 cut(s)	248
Bso31I	GGTCTC	2 cut(s)	125, 147
BsoBI	CYCGRG	2 cut(s)	222, 265
Bsp1286I	GDGCHC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	94, 209, 264
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	2 cut(s)	125, 147
BssECI	CCNNGG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	59
BstMAI	GTCTC	2 cut(s)	125, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	88, 242
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	262
CsiI	ACCWGGT	1 cut(s)	88
CviAII	CATG	2 cut(s)	166, 204
CviJI	RGCY	3 cut(s)	28, 101, 208
CviKI_1	RGCY	3 cut(s)	28, 101, 208
DraIII	CACNNNGTG	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	2 cut(s)	125, 147
Eco47I	GGWCC	1 cut(s)	262
Eco88I	CYCGRG	2 cut(s)	222, 265
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	169, 207
FaiI	YATR	6 cut(s)	18, 36, 116, 167, 205, 234
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	165, 203
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	8
HapII	CCGG	2 cut(s)	243, 252
Hin1II	CATG	2 cut(s)	169, 207
HpaII	CCGG	2 cut(s)	243, 252
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	2 cut(s)	272, 278
Hpy188III	TCNNGA	2 cut(s)	222, 265
Hpy8I	GTNNAC	2 cut(s)	272, 278
HpyAV	CCTTC	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	40, 274
HpyCH4V	TGCA	3 cut(s)	7, 38, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	40, 274
Hsp92II	CATG	2 cut(s)	169, 207
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	7 cut(s)	42, 75, 102, 184, 224, 256, 265
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	2 cut(s)	68, 74
MabI	ACCWGGT	1 cut(s)	88
MaeII	ACGT	2 cut(s)	40, 274
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	1 cut(s)	238
MnlI	CCTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	176
MspI	CCGG	2 cut(s)	243, 252
MspR9I	CCNGG	2 cut(s)	90, 244
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	244
NlaIII	CATG	2 cut(s)	169, 207
NlaIV	GGNNCC	3 cut(s)	94, 209, 264
PaeR7I	CTCGAG	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	9
Ppu21I	YACGTR	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	94, 209, 264
PspPI	GGNCC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	90, 244
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	5 cut(s)	43, 91, 115, 159, 277
SexAI	ACCWGGT	1 cut(s)	88
SfaNI	GCATC	2 cut(s)	68, 74
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	262
SlaI	CTCGAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	88, 242
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	2 cut(s)	43, 277
TaqI	TCGA	1 cut(s)	223
TaqII	GACCGA	1 cut(s)	250
TasI	AATT	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseI	GCWGC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.