Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002482.1

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Forward (+)

34204 .. 37328

Gene Structure 3125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002482.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgttgacattctttaggtcagacctggtgcctgcctatgttcgacttcttcgcgataatgaggctgaggtgcggattgctgctgcaggaaaagtaaccaagttatgccgaattttggacccagaacttgccgttcagcaaatcctaccatttgttaaggaattgtcaacagattcatcccagcacgttcgctctgcattggcttcagtgataatgggaatggcaccagttttaggaaaggatgcaaccatagagcaactgctgcctattttcctttctcttctcaaagatgagtttccagatgtccggctgaacattattagcaagcttgatcaagtcaaccagggaattggaattgatctgctgtcccagtctctactgccagcaattgtggaactggcagaggatagacattggagggttcggcttgcgataatagaatatatccctttattggcaagtcagttgggtgtggggtttttcgatgataagcttggttctctttgcatgtggttaaatgataaggtttactcaatacgtgatgcagctgctaataatgtgaagcgccttgcagaagaatttggtcctgattgggccatgcagcatatagtcccacaggtttctctggatgtcatcgctatgaagctcaccagcgtcttgggctcccaacaatacgttgcaaaattcgacgtgggacaaaagaaactctccggtacttttgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

241

Amino Acids

26.74

Weight (kDa)

5.67

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	28, 223
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	73
AcsI	RAATTY	3 cut(s)	111, 578, 683
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	3 cut(s)	115, 233, 454
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	2 cut(s)	24, 342
AluBI	AGCT	4 cut(s)	328, 493, 548, 646
AluI	AGCT	4 cut(s)	328, 493, 548, 646
Alw26I	GTCTC	1 cut(s)	378
AoxI	GGCC	1 cut(s)	594
ApeKI	GCWGC	6 cut(s)	80, 83, 262, 545, 548, 601
ApoI	RAATTY	3 cut(s)	111, 578, 683
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	3 cut(s)	118, 584, 594
AsuHPI	GGTGA	1 cut(s)	640
AvaII	GGWCC	2 cut(s)	118, 584
BanI	GGYRCC	2 cut(s)	28, 223
BanII	GRGCYC	1 cut(s)	665
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	6 cut(s)	67, 70, 249, 535, 557, 613
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	2 cut(s)	26, 344
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	724
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	568
BisI	GCNGC	6 cut(s)	81, 84, 263, 546, 549, 602
BlsI	GCNGC	6 cut(s)	82, 85, 264, 547, 550, 603
Bme1390I	CCNGG	2 cut(s)	26, 344
Bme18I	GGWCC	2 cut(s)	118, 584
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	3 cut(s)	118, 584, 594
BmiI	GGNNCC	4 cut(s)	30, 120, 225, 664
BmrFI	CCNGG	2 cut(s)	26, 344
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	232, 532
BmuI	ACTGGG	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 233, 454
Bse1I	ACTGG	3 cut(s)	227, 370, 402
BseBI	CCWGG	2 cut(s)	26, 344
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	3 cut(s)	176, 247, 634
BseLI	CCNNNNNNNGG	3 cut(s)	115, 233, 454
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	227, 370, 402
BseXI	GCAGC	6 cut(s)	67, 70, 249, 535, 557, 613
BseYI	CCCAGC	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	596
BshNI	GGYRCC	2 cut(s)	28, 223
BsiSI	CCGG	2 cut(s)	307, 711
BslFI	GGGAC	3 cut(s)	352, 596, 708
BslI	CCNNNNNNNGG	3 cut(s)	115, 233, 454
BsmAI	GTCTC	1 cut(s)	378
BsmFI	GGGAC	3 cut(s)	352, 596, 708
BsnI	GGCC	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp143I	GATC	2 cut(s)	331, 358
Bsp68I	TCGCGA	1 cut(s)	54
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	596
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	4 cut(s)	30, 120, 225, 664
BspMAI	CTGCAG	1 cut(s)	88
BspT107I	GGYRCC	2 cut(s)	28, 223
BsrI	ACTGG	3 cut(s)	227, 370, 402
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	331, 358
Bst2UI	CCWGG	2 cut(s)	26, 344
Bst6I	CTCTTC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	4 cut(s)	33, 326, 384, 429
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	176, 247, 634
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	2 cut(s)	334, 361
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	2 cut(s)	331, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 660
BstNI	CCWGG	2 cut(s)	26, 344
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	24, 342
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	6 cut(s)	67, 70, 249, 535, 557, 613
BstXI	CCANNNNNNTGG	2 cut(s)	350, 658
BsuRI	GGCC	1 cut(s)	596
BtgZI	GCGATG	1 cut(s)	619
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	3 cut(s)	176, 247, 634
BtsIMutI	CAGTG	1 cut(s)	213
BtuMI	TCGCGA	1 cut(s)	54
Cac8I	GCNNGC	4 cut(s)	33, 326, 384, 429
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	3 cut(s)	118, 584, 594
CseI	GACGC	1 cut(s)	643
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	714
CviAII	CATG	2 cut(s)	508, 598
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	333, 360
DpnII	GATC	2 cut(s)	331, 358
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	665
Eco47I	GGWCC	2 cut(s)	118, 584
Eco57I	CTGAAG	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	24, 342
EcoT38I	GRGCYC	1 cut(s)	665
FaeI	CATG	2 cut(s)	511, 601
FaiI	YATR	9 cut(s)	39, 106, 251, 444, 509, 599, 606, 608, 641
FaqI	GGGAC	3 cut(s)	352, 596, 708
FatI	CATG	2 cut(s)	507, 597
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	6 cut(s)	81, 84, 263, 546, 549, 602
FokI	GGATG	3 cut(s)	163, 254, 641
FriOI	GRGCYC	1 cut(s)	665
Fsp4HI	GCNGC	6 cut(s)	81, 84, 263, 546, 549, 602
FspBI	CTAG	1 cut(s)	724
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	6 cut(s)	81, 84, 263, 546, 549, 602
GsaI	CCCAGC	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	568
HaeIII	GGCC	1 cut(s)	596
HapII	CCGG	2 cut(s)	307, 711
HgaI	GACGC	1 cut(s)	643
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	2 cut(s)	511, 601
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	3 cut(s)	6, 168, 340
HindII	GTYRAC	3 cut(s)	6, 168, 340
HindIII	AAGCTT	2 cut(s)	326, 491
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	2 cut(s)	307, 711
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	4 cut(s)	6, 168, 340, 529
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	4 cut(s)	53, 299, 587, 626
Hpy8I	GTNNAC	4 cut(s)	6, 168, 340, 529
Hpy99I	CGWCG	1 cut(s)	692
HpyCH4IV	ACGT	4 cut(s)	186, 538, 675, 690
HpyCH4V	TGCA	8 cut(s)	86, 197, 245, 507, 545, 572, 601, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 660
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	4 cut(s)	186, 538, 675, 690
Hsp92II	CATG	2 cut(s)	511, 601
HspAI	GCGC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	331, 358
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	6 cut(s)	67, 70, 249, 535, 557, 613
LweI	GCATC	2 cut(s)	232, 532
MabI	ACCWGGT	1 cut(s)	24
MaeI	CTAG	1 cut(s)	724
MaeII	ACGT	4 cut(s)	186, 538, 675, 690
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	333, 360
MboI	GATC	2 cut(s)	331, 358
MboII	GAAGA	3 cut(s)	41, 272, 587
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	7 cut(s)	111, 161, 348, 354, 387, 578, 683
MnlI	CCTC	4 cut(s)	55, 61, 397, 411
MseI	TTAA	2 cut(s)	156, 515
MslI	CAYNNNNRTG	1 cut(s)	638
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	2 cut(s)	307, 711
MspR9I	CCNGG	2 cut(s)	26, 344
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	26, 344
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	262, 660
NdeII	GATC	2 cut(s)	331, 358
NlaIII	CATG	2 cut(s)	511, 601
NlaIV	GGNNCC	4 cut(s)	30, 120, 225, 664
NruI	TCGCGA	1 cut(s)	54
NspI	RCATGY	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	6 cut(s)	82, 85, 264, 547, 550, 603
Ppu21I	YACGTR	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	24, 342
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	2 cut(s)	24, 342
PspN4I	GGNNCC	4 cut(s)	30, 120, 225, 664
PspPI	GGNCC	3 cut(s)	118, 584, 594
PstI	CTGCAG	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	548
RruI	TCGCGA	1 cut(s)	54
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	2 cut(s)	156, 515
SatI	GCNGC	6 cut(s)	81, 84, 263, 546, 549, 602
Sau3AI	GATC	2 cut(s)	331, 358
Sau96I	GGNCC	3 cut(s)	118, 584, 594
ScrFI	CCNGG	2 cut(s)	26, 344
SduI	GDGCHC	1 cut(s)	665
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	232, 532
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	118, 584
SmiMI	CAYNNNNRTG	1 cut(s)	638
Sse9I	AATT	7 cut(s)	111, 161, 348, 354, 387, 578, 683
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	724
StyD4I	CCNGG	2 cut(s)	24, 342
TaiI	ACGT	4 cut(s)	189, 541, 678, 693
TaqI	TCGA	3 cut(s)	43, 483, 687
TasI	AATT	7 cut(s)	111, 161, 348, 354, 387, 578, 683
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	156, 515
Tru9I	TTAA	2 cut(s)	156, 515
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	6 cut(s)	80, 83, 262, 545, 548, 601
TspDTI	ATGAA	2 cut(s)	165, 656
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	2 cut(s)	118, 584
XapI	RAATTY	3 cut(s)	111, 578, 683
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.