Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

34044247 .. 34044450

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1265800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGACTTATCTGTATTTCTCGCCAACATTCACCTTTCCCAGACCCTGCGTAAAGCAGGAGCCTTGTGCATTGGGTACGACCTTTTTTTTATTCATGATGCAAACTTGTTCTTTGGACCACGATAAGTCTTGGCGTGTTTGGTACATGGTTGCGAATCAATTATACGAGCTGTGTGAAGCTGTTGGTCCAGAAGCTACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0019220 GO:0019222 GO:0031323 GO:0042221 GO:0042325 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051174 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

68

Amino Acids

7.87

Weight (kDa)

5.6

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	76, 143
AluBI	AGCT	3 cut(s)	169, 179, 194
AluI	AGCT	3 cut(s)	169, 179, 194
AlwNI	CAGNNNCTG	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	115, 185
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	115, 185
Bme18I	GGWCC	2 cut(s)	115, 185
BmgT120I	GGNCC	2 cut(s)	115, 185
BmiI	GGNNCC	1 cut(s)	60
BmsI	GCATC	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	45
CciI	TCATGA	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	115, 185
Csp6I	GTAC	2 cut(s)	75, 142
CviAII	CATG	2 cut(s)	94, 145
CviJI	RGCY	4 cut(s)	61, 169, 179, 194
CviKI_1	RGCY	4 cut(s)	61, 169, 179, 194
CviQI	GTAC	2 cut(s)	75, 142
Eco47I	GGWCC	2 cut(s)	115, 185
FaeI	CATG	2 cut(s)	97, 148
FaiI	YATR	3 cut(s)	95, 146, 163
FatI	CATG	2 cut(s)	93, 144
Hin1II	CATG	2 cut(s)	97, 148
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	94, 188
HpyCH4V	TGCA	2 cut(s)	68, 100
Hsp92II	CATG	2 cut(s)	97, 148
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	41, 52, 58
LweI	GCATC	1 cut(s)	87
MluCI	AATT	1 cut(s)	158
NlaIII	CATG	2 cut(s)	97, 148
NlaIV	GGNNCC	1 cut(s)	60
PagI	TCATGA	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	115, 185
PstNI	CAGNNNCTG	1 cut(s)	45
RsaI	GTAC	2 cut(s)	76, 143
RsaNI	GTAC	2 cut(s)	75, 142
Sau96I	GGNCC	2 cut(s)	115, 185
SetI	ASST	5 cut(s)	35, 83, 171, 181, 196
SfaNI	GCATC	1 cut(s)	87
SinI	GGWCC	2 cut(s)	115, 185
Sse9I	AATT	1 cut(s)	158
TasI	AATT	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	115, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.