Rh4AG107100

pyrophosphate-energized membrane proton pump

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
23177706 .. 23180427
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG107100.1

Sequence Viewer

Length: 318 bp
ATGTTTTGCATTCCTTTTAGTAATGCCTTTTCTAACATGTTGCTGCAGGAATATAAGGAGAAGCCAGATTATGCACGTTGTGTTGCTATTGTAGCATCTGCATCTTTGAGGGAGATGATAAAACCTGGTGCCTTGGCTATTATTTCACCTATAGCAGTTGCTATTGCGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGAGTGGGAGACCCATTCAAAGACACAGCTAGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGCTGGTCATGGCTCCTGTCTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.68

Weight (kDa)

9.26

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
H_PPase PF03030 14 - 57 2.8e-10 Inorganic H+ pyrophosphatase
H_PPase PF03030 73 - 100 7.7e-07 Inorganic H+ pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AccIII TCCGGA 2 cut(s) 171, 190
AdeI CACNNNGTG 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 219
Aor13HI TCCGGA 2 cut(s) 171, 190
ApeKI GCWGC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 138
BanI GGYRCC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 2 cut(s) 44, 150
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 130, 303
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 2 cut(s) 104, 110
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 2 cut(s) 171, 190
BseAI TCCGGA 2 cut(s) 171, 190
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 172, 191
BsmAI GTCTC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 9
Bso31I GGTCTC 1 cut(s) 219
Bsp13I TCCGGA 2 cut(s) 171, 190
BspEI TCCGGA 2 cut(s) 171, 190
BspLI GGNNCC 2 cut(s) 130, 303
BspMAI CTGCAG 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 2 cut(s) 44, 150
BstV1I GCAGC 1 cut(s) 30
BsuI GTATCC 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 279
CsiI ACCWGGT 1 cut(s) 124
CviAII CATG 3 cut(s) 37, 260, 298
CviJI RGCY 4 cut(s) 64, 137, 245, 302
CviKI_1 RGCY 4 cut(s) 64, 137, 245, 302
DraIII CACNNNGTG 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 40, 263, 301
FaiI YATR 7 cut(s) 38, 54, 72, 152, 215, 261, 299
FatI CATG 3 cut(s) 36, 259, 297
Fnu4HI GCNGC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 1 cut(s) 246
GluI GCNGC 1 cut(s) 44
HapII CCGG 2 cut(s) 172, 191
Hin1II CATG 3 cut(s) 40, 263, 301
HpaII CCGG 2 cut(s) 172, 191
HphI GGTGA 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 172, 191
HpyAV CCTTC 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 4 cut(s) 9, 46, 74, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 3 cut(s) 40, 263, 301
Kpn2I TCCGGA 2 cut(s) 171, 190
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 7 cut(s) 32, 78, 111, 138, 185, 204, 278
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 2 cut(s) 104, 110
MabI ACCWGGT 1 cut(s) 124
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 76
MnlI CCTC 2 cut(s) 102, 187
MroI TCCGGA 2 cut(s) 171, 190
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 2 cut(s) 172, 191
MspR9I CCNGG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 9
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 92
NlaIII CATG 3 cut(s) 40, 263, 301
NlaIV GGNNCC 2 cut(s) 130, 303
NspI RCATGY 1 cut(s) 40
PciI ACATGT 1 cut(s) 36
PctI GAATGC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 45
PscI ACATGT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 130, 303
PstI CTGCAG 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 126
SetI ASST 5 cut(s) 79, 127, 151, 247, 253
SexAI ACCWGGT 1 cut(s) 124
SfaNI GCATC 2 cut(s) 104, 110
SfcI CTRYAG 2 cut(s) 44, 150
SmiMI CAYNNNNRTG 1 cut(s) 218
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 132
TaiI ACGT 1 cut(s) 79
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 248
XceI RCATGY 1 cut(s) 40
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.