RchiOBHm_Chr7g0238001

Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001174
Physical Location & Seq
Forward (+)
63332113 .. 63333565
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21330

Sequence Viewer

Length: 834 bp
ATGGTTGTTGTGATGTTGACATTCTTTAGGTCAGACCTGGTGCCTGCCTATGTTCGACTTCTTCGCGATAATGAGGCTGAGGTGCGGATTGCTGCTGCAGGAAAAGTAACCAAGTTTTGCCGAATTTTGGACCCAGAACTTGCCGTTCAGCAAATCCTACCATTTGTTAAGGAATTGTCAACAGATTCATCCCAGCACGTTCGCTCTGCATTGGCTTCAGTGATAATGGGAATGGCACCAGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTCTCAAAGATGAGTTTCCAGATGTCCGGCTGAACATTATTAGCAAGCTTGATCAAGTTGAGCCGTTCTTGGTAATTTACCTGGTGCAGGGAATTGGAATTGATCTGCTGTCCCAGTCTCTACTGCCAGCAATTGTGGAACTGGCAGAGGATAGACATTGGAGGGTTCGGCTTGCGATAATAGAATATATCCCTTCATTGGCAAGTCAGTTGGGTGTGGGGTTTTTCGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGAAAGCCAAGAAGAAGAAGAAAAAGAACTTGATGCTTCTGCTTTTTGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGTTCCTGATTGGGCCATGCAGCATATAGTCCCACAGGTTTTGGAAATGATTAACAACCCTCACTATTTGTATCGGATGACCATTCTACATGCAATTTCCCTACTTGCCCCTGTTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTGGTTATCACTGCATCAAAAGATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000159 GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006914 GO:0006915 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007098 GO:0007099 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008287 GO:0009056 GO:0009653 GO:0009790 GO:0009792 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010646 GO:0010647 GO:0010648 GO:0010921 GO:0010941 GO:0010942 GO:0012501 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016311 GO:0017151 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023056 GO:0023057 GO:0030234 GO:0031023 GO:0031323 GO:0031399 GO:0031967 GO:0031975 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0035330 GO:0035331 GO:0035770 GO:0036211 GO:0036464 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045121 GO:0045495 GO:0046626 GO:0046627 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051225 GO:0051246 GO:0051298 GO:0051336 GO:0060255 GO:0060293 GO:0060561 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0072686 GO:0080090 GO:0098534 GO:0098589 GO:0098772 GO:0098805 GO:0098857 GO:1900076 GO:1900077 GO:1901564 GO:1902494 GO:1902531 GO:1902532 GO:1902742 GO:1903293 GO:1990904 GO:2001233 GO:2001235 GO:2001236 GO:2001238 GO:2001239 GO:2001241
KEGG Pathways
Metabolic & Signaling
ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165
Pfam Domains
Protein Families
HEAT HEAT_2

Protein Analysis

277

Amino Acids

31.25

Weight (kDa)

7.71

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPP2R1A-like_HEAT PF22646 10 - 80 2.8e-27 PPP2R1A-like HEAT repeat
VPS15-like_hel PF22956 81 - 273 3e-07 VPS15-like, helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 40, 235
AccII CGCG 1 cut(s) 66
AciI CCGC 1 cut(s) 85
AclWI GGATC 1 cut(s) 781
AcsI RAATTY 2 cut(s) 123, 650
AcuI CTGAAG 1 cut(s) 201
AfiI CCNNNNNNNGG 5 cut(s) 127, 367, 478, 769, 770
AgeI ACCGGT 1 cut(s) 802
AjnI CCWGG 2 cut(s) 36, 360
AluBI AGCT 3 cut(s) 328, 517, 620
AluI AGCT 3 cut(s) 328, 517, 620
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 1 cut(s) 781
AoxI GGCC 1 cut(s) 666
ApeKI GCWGC 6 cut(s) 92, 95, 262, 617, 620, 673
ApoI RAATTY 2 cut(s) 123, 650
AsiGI ACCGGT 1 cut(s) 802
Asp700I GAANNNNTTC 1 cut(s) 654
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 2 cut(s) 130, 666
AvaII GGWCC 1 cut(s) 130
BanI GGYRCC 2 cut(s) 40, 235
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 6 cut(s) 79, 82, 249, 607, 629, 685
BceAI ACGGC 2 cut(s) 128, 328
BciT130I CCWGG 2 cut(s) 38, 362
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 6 cut(s) 93, 96, 263, 618, 621, 674
BlsI GCNGC 6 cut(s) 94, 97, 264, 619, 622, 675
Bme1390I CCNGG 2 cut(s) 38, 362
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 130, 666
BmiI GGNNCC 3 cut(s) 42, 132, 237
BmrFI CCNGG 2 cut(s) 38, 362
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 4 cut(s) 232, 573, 604, 827
BmuI ACTGGG 1 cut(s) 388
Bpu10I CCTNAGC 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 611
BsaWI WCCGGW 1 cut(s) 802
Bsc4I CCNNNNNNNGG 5 cut(s) 127, 367, 478, 769, 770
Bse118I RCCGGY 1 cut(s) 802
Bse1I ACTGG 2 cut(s) 394, 426
BseBI CCWGG 2 cut(s) 38, 362
BseGI GGATG 2 cut(s) 188, 735
BseLI CCNNNNNNNGG 5 cut(s) 127, 367, 478, 769, 770
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 394, 426
BseXI GCAGC 6 cut(s) 79, 82, 249, 607, 629, 685
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 668
BshNI GGYRCC 2 cut(s) 40, 235
BshTI ACCGGT 1 cut(s) 802
BsiSI CCGG 2 cut(s) 307, 803
BslFI GGGAC 2 cut(s) 376, 668
BslI CCNNNNNNNGG 5 cut(s) 127, 367, 478, 769, 770
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 2 cut(s) 376, 668
BsnI GGCC 1 cut(s) 668
Bsp143I GATC 3 cut(s) 331, 382, 773
Bsp68I TCGCGA 1 cut(s) 66
BspACI CCGC 1 cut(s) 85
BspANI GGCC 1 cut(s) 668
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 42, 132, 237
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 1 cut(s) 781
BspT107I GGYRCC 2 cut(s) 40, 235
BsrFI RCCGGY 1 cut(s) 802
BsrI ACTGG 2 cut(s) 394, 426
BssAI RCCGGY 1 cut(s) 802
BssMI GATC 3 cut(s) 331, 382, 773
Bst2UI CCWGG 2 cut(s) 38, 362
Bst6I CTCTTC 1 cut(s) 285
BstAPI GCANNNNNTGC 2 cut(s) 242, 262
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 5 cut(s) 45, 326, 408, 453, 533
BstDEI CTNAG 1 cut(s) 78
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 2 cut(s) 188, 735
BstFNI CGCG 1 cut(s) 66
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 3 cut(s) 334, 385, 776
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 3 cut(s) 331, 382, 773
BstMWI GCNNNNNNNGC 2 cut(s) 242, 262
BstNI CCWGG 2 cut(s) 38, 362
BstNSI RCATGY 2 cut(s) 535, 746
BstSCI CCNGG 2 cut(s) 36, 360
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 6 cut(s) 79, 82, 249, 607, 629, 685
BsuRI GGCC 1 cut(s) 668
BtsCI GGATG 2 cut(s) 188, 735
BtsI GCAGTG 2 cut(s) 542, 813
BtsIMutI CAGTG 3 cut(s) 225, 542, 813
BtuMI TCGCGA 1 cut(s) 66
Cac8I GCNNGC 5 cut(s) 45, 326, 408, 453, 533
CfoI GCGC 1 cut(s) 639
Cfr10I RCCGGY 1 cut(s) 802
Cfr13I GGNCC 2 cut(s) 130, 666
CsiI ACCWGGT 2 cut(s) 36, 360
CspAI ACCGGT 1 cut(s) 802
CspCI CAANNNNNGTGG 2 cut(s) 675, 710
CviAII CATG 3 cut(s) 532, 670, 743
DdeI CTNAG 1 cut(s) 78
DpnI GATC 3 cut(s) 333, 384, 775
DpnII GATC 3 cut(s) 331, 382, 773
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 36, 360
FaeI CATG 3 cut(s) 535, 673, 746
FaiI YATR 9 cut(s) 51, 251, 468, 533, 671, 678, 680, 744, 770
FaqI GGGAC 2 cut(s) 376, 668
FatI CATG 3 cut(s) 531, 669, 742
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 6 cut(s) 93, 96, 263, 618, 621, 674
FokI GGATG 2 cut(s) 175, 742
Fsp4HI GCNGC 6 cut(s) 93, 96, 263, 618, 621, 674
GlaI GCGC 1 cut(s) 638
GluI GCNGC 6 cut(s) 93, 96, 263, 618, 621, 674
GsaI CCCAGC 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 1 cut(s) 668
HapII CCGG 2 cut(s) 307, 803
HhaI GCGC 1 cut(s) 639
Hin1II CATG 3 cut(s) 535, 673, 746
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 2 cut(s) 18, 180
HindII GTYRAC 2 cut(s) 18, 180
HindIII AAGCTT 2 cut(s) 326, 515
HinfI GANTC 1 cut(s) 185
HpaII CCGG 2 cut(s) 307, 803
Hpy166II GTNNAC 3 cut(s) 18, 180, 601
Hpy188I TCNGA 3 cut(s) 34, 729, 778
Hpy188III TCNNGA 3 cut(s) 65, 299, 659
Hpy8I GTNNAC 3 cut(s) 18, 180, 601
HpyAV CCTTC 1 cut(s) 483
HpyCH4IV ACGT 2 cut(s) 198, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 262
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 2 cut(s) 198, 610
Hsp92II CATG 3 cut(s) 535, 673, 746
HspAI GCGC 1 cut(s) 637
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 3 cut(s) 331, 382, 773
Lsp1109I GCAGC 6 cut(s) 79, 82, 249, 607, 629, 685
LweI GCATC 4 cut(s) 232, 573, 604, 827
MabI ACCWGGT 2 cut(s) 36, 360
MaeII ACGT 2 cut(s) 198, 610
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 333, 384, 775
MboI GATC 3 cut(s) 331, 382, 773
MboII GAAGA 6 cut(s) 53, 272, 574, 577, 580, 659
MfeI CAATTG 1 cut(s) 411
MluCI AATT 9 cut(s) 123, 173, 354, 372, 378, 411, 650, 747, 780
MnlI CCTC 5 cut(s) 67, 73, 421, 435, 723
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 3 cut(s) 168, 542, 705
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 2 cut(s) 307, 803
MspR9I CCNGG 2 cut(s) 38, 362
MunI CAATTG 1 cut(s) 411
MvaI CCWGG 2 cut(s) 38, 362
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 242, 262
NdeII GATC 3 cut(s) 331, 382, 773
NlaIII CATG 3 cut(s) 535, 673, 746
NlaIV GGNNCC 3 cut(s) 42, 132, 237
NruI TCGCGA 1 cut(s) 66
NspI RCATGY 2 cut(s) 535, 746
PaeI GCATGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 802
PkrI GCNGC 6 cut(s) 94, 97, 264, 619, 622, 675
Ppu21I YACGTR 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 36, 360
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 2 cut(s) 36, 360
PspN4I GGNNCC 3 cut(s) 42, 132, 237
PspPI GGNCC 2 cut(s) 130, 666
PstI CTGCAG 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 620
RruI TCGCGA 1 cut(s) 66
SaqAI TTAA 3 cut(s) 168, 542, 705
SatI GCNGC 6 cut(s) 93, 96, 263, 618, 621, 674
Sau3AI GATC 3 cut(s) 331, 382, 773
Sau96I GGNCC 2 cut(s) 130, 666
ScrFI CCNGG 2 cut(s) 38, 362
SexAI ACCWGGT 2 cut(s) 36, 360
SfaNI GCATC 4 cut(s) 232, 573, 604, 827
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 130
SphI GCATGC 1 cut(s) 535
Sse9I AATT 9 cut(s) 123, 173, 354, 372, 378, 411, 650, 747, 780
SsiI CCGC 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 36, 360
TaiI ACGT 2 cut(s) 201, 613
TaqI TCGA 2 cut(s) 55, 507
TasI AATT 9 cut(s) 123, 173, 354, 372, 378, 411, 650, 747, 780
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 168, 542, 705
Tru9I TTAA 3 cut(s) 168, 542, 705
TscAI CASTG 3 cut(s) 225, 542, 820
TseI GCWGC 6 cut(s) 92, 95, 262, 617, 620, 673
TspDTI ATGAA 2 cut(s) 177, 465
TspRI CASTG 3 cut(s) 225, 542, 820
VpaK11BI GGWCC 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 2 cut(s) 123, 650
XceI RCATGY 2 cut(s) 535, 746
XmnI GAANNNNTTC 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.