Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

5183251 .. 5185279

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG072500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGAATGGCACCAGTTTTAGGAAAGGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTCTCAAAGATGAGTTTCCAGATGTCCGGCTGAACATTATCAGCAAGCTTGATCAAGTCAACCAGGTAATTGGAATTGATCTGTTGTCCCAGTCTCTACTGCCAGCAATTGTGGAACTGGCAGAGGATAGACATTGGAGGGTTCGGCTTGCAATAATAGAATATATCCCTTTATTGGCAAGTCAGTTGGGTGTGGGGTTTTTTGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGGCCCTGATTGGGCCATGCAGCATATAGTCCCACAGGTTTTGGAAATGATTAACAACCCTCACTATTTGTATCGGATGACCATTCTACATGCAATTTCCCTACTTGCCCCTGTTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTGGTTATCACTGCATCAAAAGATAGGGTTCCAAACATCAAGTTCAATGTCGCCAAGGTGTTGCAGTCACTTATTCCTATAGTTGATCAATCTGTGGTGGAGAAGATGATTCGTCCCTGTTTGGTTGAGCTCAGTGAAGATCCAGACGTTGATGTAAGATCTTTTGCGACCCAAGCGCTACAGTCAAGTGACGTCATGATGTCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0008287 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009914 GO:0009926 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010119 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0019220 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0030312 GO:0031323 GO:0031399 GO:0032268 GO:0032870 GO:0032991 GO:0033993 GO:0035303 GO:0035304 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051716 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902494 GO:1903293 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

243

Amino Acids

27.17

Weight (kDa)

5.0

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	18 - 114	7.1e-06	HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	10
AclWI	GGATC	2 cut(s)	499, 656
AcsI	RAATTY	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	714
AfeI	AGCGCT	1 cut(s)	699
AfiI	CCNNNNNNNGG	5 cut(s)	20, 241, 382, 487, 488
AgeI	ACCGGT	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	115, 280, 338, 652
AluI	AGCT	4 cut(s)	115, 280, 338, 652
Alw21I	GWGCWC	1 cut(s)	654
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	2 cut(s)	499, 656
Aor51HI	AGCGCT	1 cut(s)	699
AoxI	GGCC	2 cut(s)	373, 384
ApeKI	GCWGC	4 cut(s)	49, 335, 338, 391
ApoI	RAATTY	1 cut(s)	368
AsiGI	ACCGGT	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	357, 700
AspS9I	GGNCC	2 cut(s)	374, 384
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	654
BbvI	GCAGC	4 cut(s)	36, 325, 347, 403
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	2 cut(s)	118, 607
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	730
BfmI	CTRYAG	2 cut(s)	600, 701
BfoI	RGCGCY	2 cut(s)	358, 701
BglII	AGATCT	1 cut(s)	680
BisI	GCNGC	4 cut(s)	50, 336, 339, 392
BlsI	GCNGC	4 cut(s)	51, 337, 340, 393
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	374, 384
BmiI	GGNNCC	2 cut(s)	12, 552
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	19, 322, 545
BmuI	ACTGGG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	1 cut(s)	576
BsaWI	WCCGGW	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 241, 382, 487, 488
Bse118I	RCCGGY	1 cut(s)	520
Bse1I	ACTGG	3 cut(s)	14, 157, 189
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	2 cut(s)	34, 453
BseLI	CCNNNNNNNGG	5 cut(s)	20, 241, 382, 487, 488
BseMII	CTCAG	1 cut(s)	667
BseNI	ACTGG	3 cut(s)	14, 157, 189
BseXI	GCAGC	4 cut(s)	36, 325, 347, 403
BshFI	GGCC	2 cut(s)	375, 386
BshNI	GGYRCC	1 cut(s)	10
BshTI	ACCGGT	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	654
BsiSI	CCGG	2 cut(s)	94, 521
BslFI	GGGAC	3 cut(s)	139, 386, 621
BslI	CCNNNNNNNGG	5 cut(s)	20, 241, 382, 487, 488
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	3 cut(s)	139, 386, 621
BsnI	GGCC	2 cut(s)	375, 386
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	6 cut(s)	118, 145, 491, 607, 661, 680
BspANI	GGCC	2 cut(s)	375, 386
BspCNI	CTCAG	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	2 cut(s)	12, 552
BspPI	GGATC	2 cut(s)	499, 656
BspT107I	GGYRCC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	520
BsrI	ACTGG	3 cut(s)	14, 157, 189
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	6 cut(s)	118, 145, 491, 607, 661, 680
BssNI	GRCGYC	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	705
Bst6I	CTCTTC	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	714
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	4 cut(s)	113, 171, 216, 296
BstDEI	CTNAG	1 cut(s)	653
BstF5I	GGATG	2 cut(s)	34, 453
BstH2I	RGCGCY	2 cut(s)	358, 701
BstHHI	GCGC	2 cut(s)	357, 700
BstKTI	GATC	6 cut(s)	121, 148, 494, 610, 664, 683
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	6 cut(s)	118, 145, 491, 607, 661, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 695
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	2 cut(s)	298, 464
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	2 cut(s)	600, 701
BstV1I	GCAGC	4 cut(s)	36, 325, 347, 403
BstX2I	RGATCY	2 cut(s)	661, 680
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	2 cut(s)	661, 680
BsuRI	GGCC	2 cut(s)	375, 386
BtsCI	GGATG	2 cut(s)	34, 453
BtsI	GCAGTG	2 cut(s)	305, 531
BtsIMutI	CAGTG	3 cut(s)	305, 531, 661
Cac8I	GCNNGC	4 cut(s)	113, 171, 216, 296
CciI	TCATGA	1 cut(s)	717
CfoI	GCGC	2 cut(s)	357, 700
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	2 cut(s)	374, 384
CsiI	ACCWGGT	1 cut(s)	129
CspAI	ACCGGT	1 cut(s)	520
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	4 cut(s)	295, 388, 461, 718
CviJI	RGCY	8 cut(s)	97, 115, 214, 280, 338, 375, 386, 652
CviKI_1	RGCY	8 cut(s)	97, 115, 214, 280, 338, 375, 386, 652
DdeI	CTNAG	1 cut(s)	653
DpnI	GATC	6 cut(s)	120, 147, 493, 609, 663, 682
DpnII	GATC	6 cut(s)	118, 145, 491, 607, 661, 680
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	654
Eco47III	AGCGCT	1 cut(s)	699
Eco53kI	GAGCTC	1 cut(s)	652
EcoICRI	GAGCTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	4 cut(s)	298, 391, 464, 721
FaqI	GGGAC	3 cut(s)	139, 386, 621
FatI	CATG	4 cut(s)	294, 387, 460, 717
FbaI	TGATCA	2 cut(s)	118, 607
Fnu4HI	GCNGC	4 cut(s)	50, 336, 339, 392
FokI	GGATG	2 cut(s)	41, 460
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	4 cut(s)	50, 336, 339, 392
FspBI	CTAG	1 cut(s)	730
GlaI	GCGC	2 cut(s)	356, 699
GluI	GCNGC	4 cut(s)	50, 336, 339, 392
HaeII	RGCGCY	2 cut(s)	358, 701
HaeIII	GGCC	2 cut(s)	375, 386
HapII	CCGG	2 cut(s)	94, 521
HhaI	GCGC	2 cut(s)	357, 700
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	4 cut(s)	298, 391, 464, 721
Hin6I	GCGC	2 cut(s)	355, 698
HinP1I	GCGC	2 cut(s)	355, 698
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	2 cut(s)	113, 278
HinfI	GANTC	1 cut(s)	631
HpaII	CCGG	2 cut(s)	94, 521
Hpy166II	GTNNAC	2 cut(s)	127, 319
Hpy188I	TCNGA	2 cut(s)	447, 496
Hpy188III	TCNNGA	3 cut(s)	86, 665, 718
Hpy8I	GTNNAC	2 cut(s)	127, 319
HpyCH4III	ACNGT	1 cut(s)	705
HpyCH4IV	ACGT	3 cut(s)	328, 669, 714
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 695
HpyF3I	CTNAG	1 cut(s)	653
HpySE526I	ACGT	3 cut(s)	328, 669, 714
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	4 cut(s)	298, 391, 464, 721
HspAI	GCGC	2 cut(s)	355, 698
Ksp22I	TGATCA	2 cut(s)	118, 607
Kzo9I	GATC	6 cut(s)	118, 145, 491, 607, 661, 680
Lsp1109I	GCAGC	4 cut(s)	36, 325, 347, 403
LweI	GCATC	3 cut(s)	19, 322, 545
MabI	ACCWGGT	1 cut(s)	129
MaeI	CTAG	1 cut(s)	730
MaeII	ACGT	3 cut(s)	328, 669, 714
MaeIII	GTNAC	2 cut(s)	588, 710
MalI	GATC	6 cut(s)	120, 147, 493, 609, 663, 682
MboI	GATC	6 cut(s)	118, 145, 491, 607, 661, 680
MboII	GAAGA	4 cut(s)	59, 377, 637, 671
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	2 cut(s)	661, 680
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	6 cut(s)	135, 141, 174, 368, 465, 498
MnlI	CCTC	3 cut(s)	184, 198, 441
MseI	TTAA	2 cut(s)	305, 423
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	2 cut(s)	94, 521
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	49, 695
NdeII	GATC	6 cut(s)	118, 145, 491, 607, 661, 680
NlaIII	CATG	4 cut(s)	298, 391, 464, 721
NlaIV	GGNNCC	2 cut(s)	12, 552
NmuCI	GTSAC	2 cut(s)	588, 710
NspI	RCATGY	2 cut(s)	298, 464
PaeI	GCATGC	1 cut(s)	298
PagI	TCATGA	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	631
PinAI	ACCGGT	1 cut(s)	520
PkrI	GCNGC	4 cut(s)	51, 337, 340, 393
Ppu21I	YACGTR	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	12, 552
PspPI	GGNCC	2 cut(s)	374, 384
PsuI	RGATCY	2 cut(s)	661, 680
PvuII	CAGCTG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	654
SaqAI	TTAA	2 cut(s)	305, 423
SatI	GCNGC	4 cut(s)	50, 336, 339, 392
Sau3AI	GATC	6 cut(s)	118, 145, 491, 607, 661, 680
Sau96I	GGNCC	2 cut(s)	374, 384
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	654
SexAI	ACCWGGT	1 cut(s)	129
SfaNI	GCATC	3 cut(s)	19, 322, 545
SfcI	CTRYAG	2 cut(s)	600, 701
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	6 cut(s)	135, 141, 174, 368, 465, 498
SspMI	CTAG	1 cut(s)	730
SstI	GAGCTC	1 cut(s)	654
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	705
TaiI	ACGT	3 cut(s)	331, 672, 717
TasI	AATT	6 cut(s)	135, 141, 174, 368, 465, 498
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	2 cut(s)	305, 423
Tru9I	TTAA	2 cut(s)	305, 423
TscAI	CASTG	3 cut(s)	305, 538, 661
TseFI	GTSAC	2 cut(s)	588, 710
TseI	GCWGC	4 cut(s)	49, 335, 338, 391
Tsp45I	GTSAC	2 cut(s)	588, 710
TspRI	CASTG	3 cut(s)	305, 538, 661
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	2 cut(s)	298, 464
XspI	CTAG	1 cut(s)	730
ZraI	GACGTC	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.