RchiOBHm_Chr3g0479971

pyrophosphate-energized membrane proton pump

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001174
Physical Location & Seq
Forward (+)
25779961 .. 25782300
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44500

Sequence Viewer

Length: 228 bp
ATGATAAAACCTGGTGCCTTGGCTATTATTTCACCTATAGCAGTTGGTGGGTATTGCGTTCTGAATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGGGTGCAATTACAGGAGACATAGTGGGAGACCCATTCAAAGACACAGCTGGACCGTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGGTGGTCATGGCTCCTGTCTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
H_PPase

Protein Analysis

75

Amino Acids

7.72

Weight (kDa)

8.71

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
H_PPase PF03030 28 - 70 2.5e-16 Inorganic H+ pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 80
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 2 cut(s) 117, 129
Aor13HI TCCGGA 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 24
AvaII GGWCC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 117, 129
BfmI CTRYAG 1 cut(s) 36
BfuI GTATCC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 16, 213
BmrFI CCNGG 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 2 cut(s) 117, 129
Bso31I GGTCTC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 80
BspEI TCCGGA 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 16, 213
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 189
BstMAI GTCTC 2 cut(s) 117, 129
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 36
BsuI GTATCC 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 158
CsiI ACCWGGT 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 183, 218
CviAII CATG 2 cut(s) 170, 208
CviJI RGCY 3 cut(s) 23, 155, 212
CviKI_1 RGCY 3 cut(s) 23, 155, 212
Eco130I CCWWGG 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 173, 211
FaiI YATR 5 cut(s) 38, 105, 128, 171, 209
FatI CATG 2 cut(s) 169, 207
HapII CCGG 1 cut(s) 81
Hin1II CATG 2 cut(s) 173, 211
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 63, 227
Hpy188III TCNNGA 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 113
Hsp92II CATG 2 cut(s) 173, 211
Kpn2I TCCGGA 1 cut(s) 80
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 24, 94, 105, 141
MabI ACCWGGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 162
MluCI AATT 1 cut(s) 114
MnlI CCTC 1 cut(s) 77
MroI TCCGGA 1 cut(s) 80
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
NlaIII CATG 2 cut(s) 173, 211
NlaIV GGNNCC 2 cut(s) 16, 213
NmuCI GTSAC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 16, 213
PspPI GGNCC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 12
SetI ASST 3 cut(s) 13, 37, 157
SexAI ACCWGGT 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 36
SgeI CNNG 9 cut(s) 23, 24, 31, 93, 132, 168, 182, 200, 220
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 1 cut(s) 114
SspI AATATT 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 162
TasI AATT 1 cut(s) 114
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseFI GTSAC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.