Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

3986595 .. 3989398

Gene Structure 2804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG021800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATCGGATGGACAAGGACAAGAGCCGTACCGATCTGCTCGCTGCTGGCCGTAAAAAGGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTGTCAAAGATGAGTTTCCAGATGTCCGGCTGAACATTATTAGCAAGCTTGAGCAAGTCAACCAGGGAATTGGAATTGATCTGCTGTCCCAGTCTCTACTGCCAGCAATTGTGGAACTGGCAGAGGATAGACATTGGAGGGTTCGGCTTGCGATAATAGAATATATCCCTTTATTGGCAAGTCAGTTGGGTGTGGGGTTTTTCGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGGTCCTGATTGGGCCATGCAGCATATAGTCCCACAGGTTTTGGAAATGATTAACAACCCTCACTATTTGTATCGGATGACCATTCTACATGTAATTTCCCTACTTGCCCCTGTTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTGGTTATCACTGCATCAAAAGATAGGTATTGCGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGGCTGCAATTACAGGAGACATAGTGGGAGACCCATTCAAAGACACAGCTAGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGTTGGTCATGGCTCCTGTCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

252

Amino Acids

28.19

Weight (kDa)

6.3

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	205 - 247	2.1e-15	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	592, 611
AclWI	GGATC	2 cut(s)	12, 532
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	4 cut(s)	58, 274, 520, 521
AflIII	ACRYGT	1 cut(s)	493
AgeI	ACCGGT	1 cut(s)	553
AgsI	TTSAA	1 cut(s)	676
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	4 cut(s)	148, 313, 371, 686
AluI	AGCT	4 cut(s)	148, 313, 371, 686
Alw26I	GTCTC	3 cut(s)	198, 648, 660
AlwI	GGATC	2 cut(s)	12, 532
Aor13HI	TCCGGA	2 cut(s)	592, 611
AoxI	GGCC	2 cut(s)	49, 417
ApeKI	GCWGC	6 cut(s)	44, 82, 368, 371, 424, 641
ApoI	RAATTY	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	553
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	407, 417
AvaII	GGWCC	1 cut(s)	407
BbvI	GCAGC	6 cut(s)	31, 69, 358, 380, 436, 628
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	2 cut(s)	12, 36
BciT130I	CCWGG	1 cut(s)	164
BciVI	GTATCC	1 cut(s)	597
BcoDI	GTCTC	3 cut(s)	198, 648, 660
BfaI	CTAG	1 cut(s)	687
BfoI	RGCGCY	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	597
BisI	GCNGC	6 cut(s)	45, 83, 369, 372, 425, 642
BlsI	GCNGC	6 cut(s)	46, 84, 370, 373, 426, 643
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	407, 417
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	3 cut(s)	52, 355, 578
BmuI	ACTGGG	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	3 cut(s)	553, 592, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 274, 520, 521
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	190, 222
BseAI	TCCGGA	2 cut(s)	592, 611
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	3 cut(s)	15, 67, 486
BseLI	CCNNNNNNNGG	4 cut(s)	58, 274, 520, 521
BseNI	ACTGG	2 cut(s)	190, 222
BseXI	GCAGC	6 cut(s)	31, 69, 358, 380, 436, 628
BshFI	GGCC	2 cut(s)	51, 419
BshTI	ACCGGT	1 cut(s)	553
BsiSI	CCGG	4 cut(s)	127, 554, 593, 612
BslFI	GGGAC	2 cut(s)	172, 419
BslI	CCNNNNNNNGG	4 cut(s)	58, 274, 520, 521
BsmAI	GTCTC	3 cut(s)	198, 648, 660
BsmFI	GGGAC	2 cut(s)	172, 419
BsnI	GGCC	2 cut(s)	51, 419
Bso31I	GGTCTC	1 cut(s)	660
Bsp13I	TCCGGA	2 cut(s)	592, 611
Bsp143I	GATC	4 cut(s)	4, 34, 178, 524
BspANI	GGCC	2 cut(s)	51, 419
BspEI	TCCGGA	2 cut(s)	592, 611
BspLI	GGNNCC	1 cut(s)	744
BspPI	GGATC	2 cut(s)	12, 532
BspTNI	GGTCTC	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	2 cut(s)	190, 222
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	4 cut(s)	4, 34, 178, 524
Bst2UI	CCWGG	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	7 cut(s)	42, 49, 146, 204, 249, 329, 720
BstF5I	GGATG	3 cut(s)	15, 67, 486
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	4 cut(s)	7, 37, 181, 527
BstMAI	GTCTC	3 cut(s)	198, 648, 660
BstMBI	GATC	4 cut(s)	4, 34, 178, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	2 cut(s)	331, 497
BstSCI	CCNGG	1 cut(s)	162
BstV1I	GCAGC	6 cut(s)	31, 69, 358, 380, 436, 628
BstXI	CCANNNNNNTGG	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	597
BsuRI	GGCC	2 cut(s)	51, 419
BtsCI	GGATG	3 cut(s)	15, 67, 486
BtsI	GCAGTG	2 cut(s)	338, 564
BtsIMutI	CAGTG	2 cut(s)	338, 564
Cac8I	GCNNGC	7 cut(s)	42, 49, 146, 204, 249, 329, 720
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	407, 417
Csp6I	GTAC	1 cut(s)	30
CspAI	ACCGGT	1 cut(s)	553
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	5 cut(s)	328, 421, 494, 701, 739
CviQI	GTAC	1 cut(s)	30
DpnI	GATC	4 cut(s)	6, 36, 180, 526
DpnII	GATC	4 cut(s)	4, 34, 178, 524
EaeI	YGGCCR	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	162
FaeI	CATG	5 cut(s)	331, 424, 497, 704, 742
FaqI	GGGAC	2 cut(s)	172, 419
FatI	CATG	5 cut(s)	327, 420, 493, 700, 738
Fnu4HI	GCNGC	6 cut(s)	45, 83, 369, 372, 425, 642
FokI	GGATG	3 cut(s)	22, 74, 493
Fsp4HI	GCNGC	6 cut(s)	45, 83, 369, 372, 425, 642
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	6 cut(s)	45, 83, 369, 372, 425, 642
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	2 cut(s)	51, 419
HapII	CCGG	4 cut(s)	127, 554, 593, 612
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	5 cut(s)	331, 424, 497, 704, 742
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	2 cut(s)	146, 311
HpaII	CCGG	4 cut(s)	127, 554, 593, 612
Hpy166II	GTNNAC	2 cut(s)	160, 352
Hpy188I	TCNGA	3 cut(s)	9, 480, 529
Hpy188III	TCNNGA	4 cut(s)	119, 410, 593, 612
Hpy8I	GTNNAC	2 cut(s)	160, 352
HpyAV	CCTTC	1 cut(s)	702
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	8 cut(s)	65, 327, 331, 368, 395, 424, 569, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	5 cut(s)	331, 424, 497, 704, 742
HspAI	GCGC	1 cut(s)	388
Kpn2I	TCCGGA	2 cut(s)	592, 611
Kzo9I	GATC	4 cut(s)	4, 34, 178, 524
LmnI	GCTCC	1 cut(s)	748
Lsp1109I	GCAGC	6 cut(s)	31, 69, 358, 380, 436, 628
LweI	GCATC	3 cut(s)	52, 355, 578
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	1 cut(s)	361
MalI	GATC	4 cut(s)	6, 36, 180, 526
MboI	GATC	4 cut(s)	4, 34, 178, 524
MboII	GAAGA	1 cut(s)	410
MfeI	CAATTG	1 cut(s)	207
MluCI	AATT	7 cut(s)	168, 174, 207, 401, 498, 531, 645
MnlI	CCTC	4 cut(s)	217, 231, 474, 608
MroI	TCCGGA	2 cut(s)	592, 611
MseI	TTAA	3 cut(s)	338, 456, 711
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	4 cut(s)	127, 554, 593, 612
MspR9I	CCNGG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	4 cut(s)	4, 34, 178, 524
NlaIII	CATG	5 cut(s)	331, 424, 497, 704, 742
NlaIV	GGNNCC	1 cut(s)	744
NspI	RCATGY	2 cut(s)	331, 497
PaeI	GCATGC	1 cut(s)	331
PciI	ACATGT	1 cut(s)	493
PinAI	ACCGGT	1 cut(s)	553
PkrI	GCNGC	6 cut(s)	46, 84, 370, 373, 426, 643
Ppu21I	YACGTR	1 cut(s)	362
PscI	ACATGT	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	2 cut(s)	407, 417
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	338, 456, 711
SatI	GCNGC	6 cut(s)	45, 83, 369, 372, 425, 642
Sau3AI	GATC	4 cut(s)	4, 34, 178, 524
Sau96I	GGNCC	2 cut(s)	407, 417
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	9 cut(s)	150, 315, 351, 364, 373, 444, 584, 688, 694
SfaNI	GCATC	3 cut(s)	52, 355, 578
SinI	GGWCC	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	331
Sse9I	AATT	7 cut(s)	168, 174, 207, 401, 498, 531, 645
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	162
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	303
TasI	AATT	7 cut(s)	168, 174, 207, 401, 498, 531, 645
Tru1I	TTAA	3 cut(s)	338, 456, 711
Tru9I	TTAA	3 cut(s)	338, 456, 711
TscAI	CASTG	2 cut(s)	338, 571
TseI	GCWGC	6 cut(s)	44, 82, 368, 371, 424, 641
TspDTI	ATGAA	1 cut(s)	689
TspRI	CASTG	2 cut(s)	338, 571
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	2 cut(s)	331, 497
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.