Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037639.1

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

364 .. 3360

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037639.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgcgcaagtcattcttgaacgtattttattggatctataatcaagattctgttcgactattggctgttgaaggctgtgctgctcttggcaagttattggagccccaagattgtgttcagcatatcctccctgttattgtcaatttctcgcaggacaaatcttggcgtgtgcgatatatggttgcaaatcaactatatgagctttgtgaagctgtggggcctgaccctacaagaacggacttggttccagcatacgtgcgattgcttcgagataatgaggctgaagtacgtatagcagctgctggaaaagttactaagttttgtcggattttaaatcccgaacttgccattcagcatattcttccctgtgtgaaggaactgtcatcagattcttcccaacatgtccgatctgctttggcttcagttatcatgggaatggctcttgtattaggaaaggatgctacaattgagcaacttcttcccatttttctttcacttctgaaggatgaatttcctgatgtgcgcctcaatatcattagcaagcttgatcaagtgaatcaggttattggaatcgatttgctatctcaatccttgttaccagccatagttgagctcgcggaggatagacattggagggttcgacttgcaattatagagtacatacctttgttggcaagtcagctgggtgtagggttctttgatgataagctcggttccctttgcatgcagtggttgcaggataaggtttactcgattcgtgatgctgctgctaataatttgaagcgccttgctgaagaatttggtccagaatgggcaatgcagcacattgttccacaggttctggagatgattgacaatccccactatttatatcgaatgacaattctgcgtgcaatctgcctccttgcccccgttatgggttcagaaatcacatgttcaaaactgctgccagtggttgtcactgcatcaaaggacagagtacccaacattaagttcaatgtggcaaaggtgctgcagtcccttatccccatagttgatcattcggtggtggagaagacaattcgtcccactttggttgagctcagtgaggatccagatgttgatgtccgattttttgctacccaggcacttcaagcaattgatcatgttatgatgtcaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

387

Amino Acids

43.55

Weight (kDa)

5.68

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccII	CGCG	1 cut(s)	617
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	3 cut(s)	41, 1085, 1098
AcsI	RAATTY	2 cut(s)	509, 797
AcuI	CTGAAG	4 cut(s)	303, 405, 521, 813
AfaI	GTAC	3 cut(s)	288, 659, 981
AfiI	CCNNNNNNNGG	2 cut(s)	916, 917
AflIII	ACRYGT	2 cut(s)	400, 932
AgsI	TTSAA	6 cut(s)	19, 71, 781, 939, 997, 1133
AhdI	GACNNNNNGTC	1 cut(s)	1062
AjnI	CCWGG	1 cut(s)	1122
AjuI	GAANNNNNNNTTGG	4 cut(s)	99, 131, 977, 1009
AluBI	AGCT	9 cut(s)	202, 212, 299, 544, 613, 682, 709, 1081, 1161
AluI	AGCT	9 cut(s)	202, 212, 299, 544, 613, 682, 709, 1081, 1161
Alw21I	GWGCWC	2 cut(s)	615, 1083
AlwI	GGATC	3 cut(s)	41, 1085, 1098
AlwNI	CAGNNNCTG	2 cut(s)	302, 841
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	8 cut(s)	80, 296, 299, 764, 767, 820, 946, 1012
ApoI	RAATTY	2 cut(s)	509, 797
AspLEI	GCGC	3 cut(s)	6, 525, 786
AspS9I	GGNCC	2 cut(s)	218, 803
AvaII	GGWCC	1 cut(s)	803
BamHI	GGATCC	1 cut(s)	1090
BanII	GRGCYC	3 cut(s)	105, 615, 1083
BbsI	GAAGAC	1 cut(s)	1061
Bbv12I	GWGCWC	2 cut(s)	615, 1083
BbvI	GCAGC	8 cut(s)	67, 286, 308, 751, 754, 832, 933, 999
BciT130I	CCWGG	1 cut(s)	1124
BclI	TGATCA	3 cut(s)	547, 1036, 1141
BfaI	CTAG	1 cut(s)	1162
BfmI	CTRYAG	1 cut(s)	1013
BfoI	RGCGCY	1 cut(s)	787
BisI	GCNGC	8 cut(s)	81, 297, 300, 765, 768, 821, 947, 1013
BlsI	GCNGC	8 cut(s)	82, 298, 301, 766, 769, 822, 948, 1014
Bme1390I	CCNGG	1 cut(s)	1124
Bme18I	GGWCC	1 cut(s)	803
BmeRI	GACNNNNNGTC	1 cut(s)	1062
BmgT120I	GGNCC	2 cut(s)	218, 803
BmiI	GGNNCC	5 cut(s)	102, 219, 246, 715, 1092
BmrFI	CCNGG	1 cut(s)	1124
BmsI	GCATC	3 cut(s)	448, 751, 974
BpiI	GAAGAC	1 cut(s)	1061
BpmI	CTGGAG	1 cut(s)	863
Bsa29I	ATCGAT	1 cut(s)	573
BsaAI	YACGTR	2 cut(s)	256, 290
BsaJI	CCNNGG	1 cut(s)	1122
Bsc4I	CCNNNNNNNGG	2 cut(s)	916, 917
Bse1I	ACTGG	1 cut(s)	950
Bse3DI	GCAATG	1 cut(s)	822
BseBI	CCWGG	1 cut(s)	1124
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	1122
BseGI	GGATG	2 cut(s)	463, 511
BseLI	CCNNNNNNNGG	2 cut(s)	916, 917
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	1 cut(s)	1096
BseNI	ACTGG	1 cut(s)	950
BseXI	GCAGC	8 cut(s)	67, 286, 308, 751, 754, 832, 933, 999
BseYI	CCCAGC	1 cut(s)	682
Bsh1236I	CGCG	1 cut(s)	617
BshFI	GGCC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	615, 1083
BslFI	GGGAC	2 cut(s)	1003, 1050
BslI	CCNNNNNNNGG	2 cut(s)	916, 917
BsmFI	GGGAC	2 cut(s)	1003, 1050
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	3 cut(s)	105, 615, 1083
Bsp143I	GATC	6 cut(s)	33, 407, 547, 1036, 1090, 1141
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	1095
BspDI	ATCGAT	1 cut(s)	573
BspFNI	CGCG	1 cut(s)	617
BspLI	GGNNCC	5 cut(s)	102, 219, 246, 715, 1092
BspMAI	CTGCAG	1 cut(s)	1017
BspPI	GGATC	3 cut(s)	41, 1085, 1098
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	1 cut(s)	950
BssECI	CCNNGG	1 cut(s)	1122
BssMI	GATC	6 cut(s)	33, 407, 547, 1036, 1090, 1141
Bst2UI	CCWGG	1 cut(s)	1124
Bst4CI	ACNGT	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstBAI	YACGTR	2 cut(s)	256, 290
BstC8I	GCNNGC	4 cut(s)	542, 615, 725, 891
BstDEI	CTNAG	2 cut(s)	315, 1082
BstF5I	GGATG	2 cut(s)	463, 511
BstFNI	CGCG	1 cut(s)	617
BstH2I	RGCGCY	1 cut(s)	787
BstHHI	GCGC	3 cut(s)	6, 525, 786
BstKTI	GATC	6 cut(s)	36, 410, 550, 1039, 1093, 1144
BstMBI	GATC	6 cut(s)	33, 407, 547, 1036, 1090, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	733, 1124, 1133
BstNI	CCWGG	1 cut(s)	1124
BstNSI	RCATGY	3 cut(s)	404, 727, 936
BstSCI	CCNGG	1 cut(s)	1122
BstSFI	CTRYAG	1 cut(s)	1013
BstSNI	TACGTA	1 cut(s)	290
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	8 cut(s)	67, 286, 308, 751, 754, 832, 933, 999
BstV2I	GAAGAC	1 cut(s)	1061
BstX2I	RGATCY	2 cut(s)	33, 1090
BstYI	RGATCY	2 cut(s)	33, 1090
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	463, 511
BtsI	GCAGTG	2 cut(s)	734, 960
BtsIMutI	CAGTG	4 cut(s)	734, 957, 960, 1090
Cac8I	GCNNGC	4 cut(s)	542, 615, 725, 891
CaiI	CAGNNNCTG	2 cut(s)	302, 841
CfoI	GCGC	3 cut(s)	6, 525, 786
Cfr13I	GGNCC	2 cut(s)	218, 803
ClaI	ATCGAT	1 cut(s)	573
Csp6I	GTAC	3 cut(s)	287, 658, 980
CspCI	CAANNNNNGTGG	2 cut(s)	1057, 1092
CviAII	CATG	5 cut(s)	401, 430, 724, 933, 1145
CviQI	GTAC	3 cut(s)	287, 658, 980
DdeI	CTNAG	2 cut(s)	315, 1082
DpnI	GATC	6 cut(s)	35, 409, 549, 1038, 1092, 1143
DpnII	GATC	6 cut(s)	33, 407, 547, 1036, 1090, 1141
DraI	TTTAAA	1 cut(s)	333
DriI	GACNNNNNGTC	1 cut(s)	1062
Eam1105I	GACNNNNNGTC	1 cut(s)	1062
Ecl136II	GAGCTC	2 cut(s)	613, 1081
Eco105I	TACGTA	1 cut(s)	290
Eco24I	GRGCYC	3 cut(s)	105, 615, 1083
Eco47I	GGWCC	1 cut(s)	803
Eco53kI	GAGCTC	2 cut(s)	613, 1081
Eco57I	CTGAAG	4 cut(s)	303, 405, 521, 813
EcoICRI	GAGCTC	2 cut(s)	613, 1081
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	1122
EcoT38I	GRGCYC	3 cut(s)	105, 615, 1083
FaeI	CATG	5 cut(s)	404, 433, 727, 936, 1148
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	1003, 1050
FatI	CATG	5 cut(s)	400, 429, 723, 932, 1144
FbaI	TGATCA	3 cut(s)	547, 1036, 1141
Fnu4HI	GCNGC	8 cut(s)	81, 297, 300, 765, 768, 821, 947, 1013
FokI	GGATG	2 cut(s)	470, 518
FriOI	GRGCYC	3 cut(s)	105, 615, 1083
Fsp4HI	GCNGC	8 cut(s)	81, 297, 300, 765, 768, 821, 947, 1013
FspBI	CTAG	1 cut(s)	1162
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	3 cut(s)	5, 524, 785
GluI	GCNGC	8 cut(s)	81, 297, 300, 765, 768, 821, 947, 1013
GsaI	CCCAGC	1 cut(s)	686
GsuI	CTGGAG	1 cut(s)	863
HaeII	RGCGCY	1 cut(s)	787
HaeIII	GGCC	1 cut(s)	220
HhaI	GCGC	3 cut(s)	6, 525, 786
Hin1II	CATG	5 cut(s)	404, 433, 727, 936, 1148
Hin6I	GCGC	3 cut(s)	4, 523, 784
HinP1I	GCGC	3 cut(s)	4, 523, 784
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	5 cut(s)	47, 389, 556, 570, 754
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	6 cut(s)	327, 388, 407, 501, 925, 1109
Hpy188III	TCNNGA	9 cut(s)	16, 44, 269, 338, 515, 758, 806, 842, 1094
Hpy8I	GTNNAC	1 cut(s)	748
HpyAV	CCTTC	3 cut(s)	65, 367, 496
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	3 cut(s)	21, 255, 289
HpyCH4V	TGCA	9 cut(s)	185, 647, 723, 727, 736, 820, 893, 965, 1015
HpyF10VI	GCNNNNNNNGC	3 cut(s)	733, 1124, 1133
HpyF3I	CTNAG	2 cut(s)	315, 1082
HpySE526I	ACGT	3 cut(s)	21, 255, 289
Hsp92II	CATG	5 cut(s)	404, 433, 727, 936, 1148
HspAI	GCGC	3 cut(s)	4, 523, 784
Ksp22I	TGATCA	3 cut(s)	547, 1036, 1141
Kzo9I	GATC	6 cut(s)	33, 407, 547, 1036, 1090, 1141
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	8 cut(s)	67, 286, 308, 751, 754, 832, 933, 999
LweI	GCATC	3 cut(s)	448, 751, 974
MaeI	CTAG	1 cut(s)	1162
MaeII	ACGT	3 cut(s)	21, 255, 289
MaeIII	GTNAC	3 cut(s)	310, 594, 958
MalI	GATC	6 cut(s)	35, 409, 549, 1038, 1092, 1143
MboI	GATC	6 cut(s)	33, 407, 547, 1036, 1090, 1141
MboII	GAAGA	5 cut(s)	353, 384, 470, 806, 1066
MfeI	CAATTG	2 cut(s)	465, 1137
MflI	RGATCY	2 cut(s)	33, 1090
MhlI	GDGCHC	3 cut(s)	105, 615, 1083
MluCI	AATT	9 cut(s)	142, 465, 509, 648, 775, 797, 882, 1059, 1137
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	7 cut(s)	137, 271, 536, 613, 627, 911, 1081
MseI	TTAA	2 cut(s)	332, 990
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	299, 682
MspR9I	CCNGG	1 cut(s)	1124
MunI	CAATTG	2 cut(s)	465, 1137
MvaI	CCWGG	1 cut(s)	1124
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	3 cut(s)	733, 1124, 1133
NdeII	GATC	6 cut(s)	33, 407, 547, 1036, 1090, 1141
NlaIII	CATG	5 cut(s)	404, 433, 727, 936, 1148
NlaIV	GGNNCC	5 cut(s)	102, 219, 246, 715, 1092
NmuCI	GTSAC	1 cut(s)	958
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	3 cut(s)	404, 727, 936
PaeI	GCATGC	1 cut(s)	727
PciI	ACATGT	2 cut(s)	400, 932
PfeI	GAWTC	5 cut(s)	47, 389, 556, 570, 754
PkrI	GCNGC	8 cut(s)	82, 298, 301, 766, 769, 822, 948, 1014
Ppu21I	YACGTR	2 cut(s)	256, 290
PscI	ACATGT	2 cut(s)	400, 932
Psp124BI	GAGCTC	2 cut(s)	615, 1083
Psp6I	CCWGG	1 cut(s)	1122
PspFI	CCCAGC	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	1122
PspN4I	GGNNCC	5 cut(s)	102, 219, 246, 715, 1092
PspPI	GGNCC	2 cut(s)	218, 803
PstI	CTGCAG	1 cut(s)	1017
PstNI	CAGNNNCTG	2 cut(s)	302, 841
PsuI	RGATCY	2 cut(s)	33, 1090
PvuII	CAGCTG	2 cut(s)	299, 682
RsaI	GTAC	3 cut(s)	288, 659, 981
RsaNI	GTAC	3 cut(s)	287, 658, 980
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	2 cut(s)	615, 1083
SaqAI	TTAA	2 cut(s)	332, 990
SatI	GCNGC	8 cut(s)	81, 297, 300, 765, 768, 821, 947, 1013
Sau3AI	GATC	6 cut(s)	33, 407, 547, 1036, 1090, 1141
Sau96I	GGNCC	2 cut(s)	218, 803
ScrFI	CCNGG	1 cut(s)	1124
SduI	GDGCHC	3 cut(s)	105, 615, 1083
SfaNI	GCATC	3 cut(s)	448, 751, 974
SfcI	CTRYAG	1 cut(s)	1013
SinI	GGWCC	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	434
SnaBI	TACGTA	1 cut(s)	290
SphI	GCATGC	1 cut(s)	727
Sse9I	AATT	9 cut(s)	142, 465, 509, 648, 775, 797, 882, 1059, 1137
SsiI	CCGC	1 cut(s)	617
SspMI	CTAG	1 cut(s)	1162
SstI	GAGCTC	2 cut(s)	615, 1083
StyD4I	CCNGG	1 cut(s)	1122
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	3 cut(s)	24, 258, 292
TaqI	TCGA	6 cut(s)	55, 268, 573, 640, 752, 874
TasI	AATT	9 cut(s)	142, 465, 509, 648, 775, 797, 882, 1059, 1137
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	5 cut(s)	47, 389, 556, 570, 754
Tru1I	TTAA	2 cut(s)	332, 990
Tru9I	TTAA	2 cut(s)	332, 990
TscAI	CASTG	4 cut(s)	734, 957, 967, 1090
TseFI	GTSAC	1 cut(s)	958
TseI	GCWGC	8 cut(s)	80, 296, 299, 764, 767, 820, 946, 1012
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	4 cut(s)	734, 957, 967, 1090
VpaK11BI	GGWCC	1 cut(s)	803
XapI	RAATTY	2 cut(s)	509, 797
XceI	RCATGY	3 cut(s)	404, 727, 936
XspI	CTAG	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.