Rroxscaffold_6G00407250

pyrophosphate-energized membrane proton pump

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001174
Physical Location & Seq
Reverse (-)
29940022 .. 29942698
2677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407250.1

Sequence Viewer

Length: 345 bp
ATGGACAAGGACAAGAGCCGTACCGATCTGCTTGCTGCTGGCCGTGAAAAGGAATATAAGGAGAAGCCAGATTATGCACGTTGTGTTGCTATTGTAGCATCTGCATCTTTGAGGGAGATGATAAAACCTGGTGCCTTGGCTATTATTTCACCTATAGCAGTTGGTGGGTATTGCGTTCCGGATATTTGGATACTATCTGGAGGCAAAGTAAGTGATTGTCATAAGGCTGCAATTACAGGAGACATAGTGGGAGACCCATTCAAAGACACAGCTAGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGCTGGTCATGGCTCTTGTCTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
H_PPase

Protein Analysis

114

Amino Acids

12.29

Weight (kDa)

8.81

Isoelectric Point (pI)

25.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
H_PPase PF03030 18 - 56 3e-09 Inorganic H+ pyrophosphatase
H_PPase PF03030 67 - 109 6.7e-15 Inorganic H+ pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccIII TCCGGA 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 262
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw26I GTCTC 2 cut(s) 234, 246
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 35, 227
AsuHPI GGTGA 1 cut(s) 141
BanI GGYRCC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 22, 214
BceAI ACGGC 2 cut(s) 3, 27
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 234, 246
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 153
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 2 cut(s) 36, 228
BlsI GCNGC 2 cut(s) 37, 229
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 107, 113
BpmI CTGGAG 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 178
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 231, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 22, 214
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 234, 246
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 246
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 33, 40, 306
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 2 cut(s) 234, 246
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 22, 214
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 33, 40, 306
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 1 cut(s) 21
CviAII CATG 2 cut(s) 287, 325
CviJI RGCY 7 cut(s) 18, 42, 67, 140, 227, 272, 329
CviKI_1 RGCY 7 cut(s) 18, 42, 67, 140, 227, 272, 329
CviQI GTAC 1 cut(s) 21
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 290, 328
FaiI YATR 7 cut(s) 57, 75, 155, 222, 245, 288, 326
FatI CATG 2 cut(s) 286, 324
Fnu4HI GCNGC 2 cut(s) 36, 228
Fsp4HI GCNGC 2 cut(s) 36, 228
FspBI CTAG 1 cut(s) 273
GluI GCNGC 2 cut(s) 36, 228
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 179
Hin1II CATG 2 cut(s) 290, 328
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 2 cut(s) 179, 198
HpyAV CCTTC 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 77, 104, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 290, 328
Kpn2I TCCGGA 1 cut(s) 178
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 8 cut(s) 24, 81, 114, 141, 183, 192, 222, 305
Lsp1109I GCAGC 2 cut(s) 22, 214
LweI GCATC 2 cut(s) 107, 113
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 79
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MluCI AATT 1 cut(s) 231
MnlI CCTC 2 cut(s) 105, 194
MroI TCCGGA 1 cut(s) 178
MseI TTAA 1 cut(s) 297
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 290, 328
NlaIV GGNNCC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 37, 229
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 133
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 2 cut(s) 36, 228
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 129
SetI ASST 5 cut(s) 82, 130, 154, 274, 280
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 2 cut(s) 107, 113
SfcI CTRYAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 231
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 1 cut(s) 82
TasI AATT 1 cut(s) 231
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseI GCWGC 2 cut(s) 35, 227
TspDTI ATGAA 1 cut(s) 275
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.