Rmu_sc0037640.1_g000001

Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037640.1
OG0001174
Physical Location & Seq
Reverse (-)
1 .. 1238
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037640.1_g000001.1.cds

Sequence Viewer

Length: 456 bp
atgcgcaagtcattcttgaacgtattttattggatctataatcaagattctgttcgactattggctgttgaaggctgtgctgctcttggcaagttattggagccccaagattgtgttcagcatatcctccctgttattgtcaatttctcgcaggacaaatcttggcgtgtgcgatatatggttgcaaatcaactatatgagctttgtgaagctgtggggcctgaccctacaagaacggacttggttccagcatacgtgcgattgcttcgagataatgaggctgaagtacgtatagcagctgctggaaaagttactaagttttgtcggattttaaatcccgaacttgccattcagcatattcttccctgtgtgaaggaactgtcttcagattcttcccaacatgtccgatctgctttggcttcagttatcatgggaatggctcttgtattaggaaag

Protein Analysis

152

Amino Acids

17.06

Weight (kDa)

8.3

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AclWI GGATC 1 cut(s) 41
AcuI CTGAAG 3 cut(s) 303, 369, 405
AfaI GTAC 1 cut(s) 288
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 2 cut(s) 19, 71
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 3 cut(s) 202, 212, 299
AluI AGCT 3 cut(s) 202, 212, 299
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 3 cut(s) 80, 296, 299
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 67, 286, 308
BisI GCNGC 3 cut(s) 81, 297, 300
BlsI GCNGC 3 cut(s) 82, 298, 301
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 102, 219, 246
BpiI GAAGAC 1 cut(s) 375
BsaAI YACGTR 2 cut(s) 256, 290
BseXI GCAGC 3 cut(s) 67, 286, 308
BshFI GGCC 1 cut(s) 220
BsnI GGCC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 33, 407
BspANI GGCC 1 cut(s) 220
BspLI GGNNCC 3 cut(s) 102, 219, 246
BspPI GGATC 1 cut(s) 41
BssMI GATC 2 cut(s) 33, 407
Bst4CI ACNGT 1 cut(s) 381
BstBAI YACGTR 2 cut(s) 256, 290
BstDEI CTNAG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 36, 410
BstMBI GATC 2 cut(s) 33, 407
BstNSI RCATGY 1 cut(s) 404
BstSNI TACGTA 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 67, 286, 308
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 287
CviAII CATG 2 cut(s) 401, 430
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 315
DpnI GATC 2 cut(s) 35, 409
DpnII GATC 2 cut(s) 33, 407
DraI TTTAAA 1 cut(s) 333
Eco105I TACGTA 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 105
Eco57I CTGAAG 3 cut(s) 303, 369, 405
EcoO109I RGGNCCY 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 2 cut(s) 404, 433
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 2 cut(s) 400, 429
Fnu4HI GCNGC 3 cut(s) 81, 297, 300
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 81, 297, 300
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 3 cut(s) 81, 297, 300
HaeIII GGCC 1 cut(s) 220
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 404, 433
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 2 cut(s) 47, 389
Hpy188I TCNGA 3 cut(s) 327, 388, 407
Hpy188III TCNNGA 4 cut(s) 16, 44, 269, 338
HpyAV CCTTC 2 cut(s) 65, 367
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4IV ACGT 3 cut(s) 21, 255, 289
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 3 cut(s) 21, 255, 289
Hsp92II CATG 2 cut(s) 404, 433
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 33, 407
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 137, 144, 234, 261, 288, 379
Lsp1109I GCAGC 3 cut(s) 67, 286, 308
MaeII ACGT 3 cut(s) 21, 255, 289
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 35, 409
MboI GATC 2 cut(s) 33, 407
MboII GAAGA 3 cut(s) 353, 375, 384
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 2 cut(s) 137, 271
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 299
NdeII GATC 2 cut(s) 33, 407
NlaIII CATG 2 cut(s) 404, 433
NlaIV GGNNCC 3 cut(s) 102, 219, 246
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 404
PciI ACATGT 1 cut(s) 400
PfeI GAWTC 2 cut(s) 47, 389
PkrI GCNGC 3 cut(s) 82, 298, 301
Ppu21I YACGTR 2 cut(s) 256, 290
PscI ACATGT 1 cut(s) 400
PspN4I GGNNCC 3 cut(s) 102, 219, 246
PspPI GGNCC 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 3 cut(s) 81, 297, 300
Sau3AI GATC 2 cut(s) 33, 407
Sau96I GGNCC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 105
SetI ASST 6 cut(s) 24, 204, 214, 258, 292, 301
SmiMI CAYNNNNRTG 1 cut(s) 434
SnaBI TACGTA 1 cut(s) 290
Sse9I AATT 1 cut(s) 142
TaaI ACNGT 1 cut(s) 381
TaiI ACGT 3 cut(s) 24, 258, 292
TaqI TCGA 2 cut(s) 55, 268
TasI AATT 1 cut(s) 142
TfiI GAWTC 2 cut(s) 47, 389
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseI GCWGC 3 cut(s) 80, 296, 299
TspGWI ACGGA 1 cut(s) 251
XceI RCATGY 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.