Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

33203086 .. 33207163

Gene Structure 4078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGACAAGGACAAGAGCCGTACCGATCTGCTCGCTGCTGGCCGTAAAAAGGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTCTCAAAGATGAGTTTCCGGATGTCCGGCTGAACATTATTAGCAAGCTTGATCAAGTCAACCAGGGAATTGGAATTGATCTGCTGTCCCAGTCTCTACGCCAGCAATTTCAGTTGGGTGTGGGGTTTTTCGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGGTCCCGATTGGGCCATGCAGCATATAGTTTTGGAAATGATTAATAACCCTCACTATTTGTATCGGATGACCATTCTACATGCAATTTCCCCCTACTTGCCCCTGTTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTCGTTATCACTGCATCAAAAGATAGGTATTGCGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGGCTGCAATTACAGGAGACATGTAAGTCCTGTTGTCCTCCTTTTTCTGTTAATTTGGAGATGTCTAGTGGTACTGTGGCAGTAGATTTGACCAAGTTCTTATTAGTGGGAGACCCATTCAAAGACACAGCTAGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGTTGGTCATGGCTCCTGTCTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

250

Amino Acids

28.52

Weight (kDa)

8.28

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	219 - 245	5.9e-06	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	574
AccIII	TCCGGA	3 cut(s)	109, 504, 523
AclWI	GGATC	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	2 cut(s)	22, 622
AfiI	CCNNNNNNNGG	3 cut(s)	49, 432, 433
AflIII	ACRYGT	1 cut(s)	569
AgeI	ACCGGT	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	670
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	139, 232, 290, 680
AluI	AGCT	4 cut(s)	139, 232, 290, 680
Alw26I	GTCTC	3 cut(s)	189, 560, 654
AlwI	GGATC	1 cut(s)	444
Aor13HI	TCCGGA	3 cut(s)	109, 504, 523
AoxI	GGCC	2 cut(s)	40, 336
ApeKI	GCWGC	6 cut(s)	35, 73, 287, 290, 343, 553
ApoI	RAATTY	1 cut(s)	320
AseI	ATTAAT	1 cut(s)	366
AsiGI	ACCGGT	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	326, 336
AvaII	GGWCC	1 cut(s)	326
BbvI	GCAGC	6 cut(s)	22, 60, 277, 299, 355, 540
BceAI	ACGGC	2 cut(s)	3, 27
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	509
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	3 cut(s)	189, 560, 654
BfaI	CTAG	2 cut(s)	615, 681
BfoI	RGCGCY	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	6 cut(s)	36, 74, 288, 291, 344, 554
BlsI	GCNGC	6 cut(s)	37, 75, 289, 292, 345, 555
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	326, 336
BmiI	GGNNCC	2 cut(s)	328, 738
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	3 cut(s)	43, 274, 490
BmuI	ACTGGG	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	4 cut(s)	109, 465, 504, 523
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 432, 433
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	181
BseAI	TCCGGA	3 cut(s)	109, 504, 523
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	58, 118, 396
BseLI	CCNNNNNNNGG	3 cut(s)	49, 432, 433
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	6 cut(s)	22, 60, 277, 299, 355, 540
Bsh1285I	CGRYCG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	42, 338
BshTI	ACCGGT	1 cut(s)	465
BsiEI	CGRYCG	1 cut(s)	470
BsiSI	CCGG	5 cut(s)	110, 118, 466, 505, 524
BslFI	GGGAC	2 cut(s)	163, 312
BslI	CCNNNNNNNGG	3 cut(s)	49, 432, 433
BsmAI	GTCTC	3 cut(s)	189, 560, 654
BsmFI	GGGAC	2 cut(s)	163, 312
BsnI	GGCC	2 cut(s)	42, 338
Bso31I	GGTCTC	1 cut(s)	654
Bsp13I	TCCGGA	3 cut(s)	109, 504, 523
Bsp143I	GATC	4 cut(s)	25, 142, 169, 436
BspANI	GGCC	2 cut(s)	42, 338
BspEI	TCCGGA	3 cut(s)	109, 504, 523
BspLI	GGNNCC	2 cut(s)	328, 738
BspPI	GGATC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	4 cut(s)	25, 142, 169, 436
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	6 cut(s)	33, 40, 137, 194, 248, 714
BstF5I	GGATG	3 cut(s)	58, 118, 396
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	4 cut(s)	28, 145, 172, 439
BstMAI	GTCTC	3 cut(s)	189, 560, 654
BstMBI	GATC	4 cut(s)	25, 142, 169, 436
BstMCI	CGRYCG	1 cut(s)	470
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	3 cut(s)	250, 407, 573
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	6 cut(s)	22, 60, 277, 299, 355, 540
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	509
BsuRI	GGCC	2 cut(s)	42, 338
BtsCI	GGATG	3 cut(s)	58, 118, 396
BtsI	GCAGTG	2 cut(s)	257, 476
BtsIMutI	CAGTG	2 cut(s)	257, 476
Cac8I	GCNNGC	6 cut(s)	33, 40, 137, 194, 248, 714
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	326, 336
Csp6I	GTAC	2 cut(s)	21, 621
CspAI	ACCGGT	1 cut(s)	465
CviAII	CATG	6 cut(s)	247, 340, 404, 570, 695, 733
CviQI	GTAC	2 cut(s)	21, 621
DpnI	GATC	4 cut(s)	27, 144, 171, 438
DpnII	GATC	4 cut(s)	25, 142, 169, 436
DrdI	GACNNNNNNGTC	1 cut(s)	574
DseDI	GACNNNNNNGTC	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	6 cut(s)	250, 343, 407, 573, 698, 736
FaqI	GGGAC	2 cut(s)	163, 312
FatI	CATG	6 cut(s)	246, 339, 403, 569, 694, 732
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	6 cut(s)	36, 74, 288, 291, 344, 554
FokI	GGATG	3 cut(s)	65, 125, 403
Fsp4HI	GCNGC	6 cut(s)	36, 74, 288, 291, 344, 554
FspBI	CTAG	2 cut(s)	615, 681
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	6 cut(s)	36, 74, 288, 291, 344, 554
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	42, 338
HapII	CCGG	5 cut(s)	110, 118, 466, 505, 524
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	6 cut(s)	250, 343, 407, 573, 698, 736
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	2 cut(s)	137, 230
HpaII	CCGG	5 cut(s)	110, 118, 466, 505, 524
Hpy166II	GTNNAC	2 cut(s)	151, 271
Hpy188I	TCNGA	2 cut(s)	390, 441
Hpy188III	TCNNGA	4 cut(s)	110, 329, 505, 524
Hpy8I	GTNNAC	2 cut(s)	151, 271
HpyAV	CCTTC	1 cut(s)	696
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	9 cut(s)	56, 246, 250, 287, 314, 343, 407, 481, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	6 cut(s)	250, 343, 407, 573, 698, 736
HspAI	GCGC	1 cut(s)	307
Kpn2I	TCCGGA	3 cut(s)	109, 504, 523
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	25, 142, 169, 436
LmnI	GCTCC	1 cut(s)	742
Lsp1109I	GCAGC	6 cut(s)	22, 60, 277, 299, 355, 540
LweI	GCATC	3 cut(s)	43, 274, 490
MaeI	CTAG	2 cut(s)	615, 681
MaeII	ACGT	1 cut(s)	280
MalI	GATC	4 cut(s)	27, 144, 171, 438
MboI	GATC	4 cut(s)	25, 142, 169, 436
MboII	GAAGA	2 cut(s)	83, 329
MluCI	AATT	8 cut(s)	159, 165, 197, 320, 408, 443, 557, 601
MnlI	CCTC	3 cut(s)	384, 520, 597
MroI	TCCGGA	3 cut(s)	109, 504, 523
MseI	TTAA	4 cut(s)	257, 366, 600, 705
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	5 cut(s)	110, 118, 466, 505, 524
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	4 cut(s)	25, 142, 169, 436
NlaIII	CATG	6 cut(s)	250, 343, 407, 573, 698, 736
NlaIV	GGNNCC	2 cut(s)	328, 738
NspI	RCATGY	3 cut(s)	250, 407, 573
PaeI	GCATGC	1 cut(s)	250
PciI	ACATGT	1 cut(s)	569
PinAI	ACCGGT	1 cut(s)	465
PkrI	GCNGC	6 cut(s)	37, 75, 289, 292, 345, 555
Ppu21I	YACGTR	1 cut(s)	281
PscI	ACATGT	1 cut(s)	569
PshBI	ATTAAT	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	328, 738
PspPI	GGNCC	2 cut(s)	326, 336
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	22, 622
RsaNI	GTAC	2 cut(s)	21, 621
SaqAI	TTAA	4 cut(s)	257, 366, 600, 705
SatI	GCNGC	6 cut(s)	36, 74, 288, 291, 344, 554
Sau3AI	GATC	4 cut(s)	25, 142, 169, 436
Sau96I	GGNCC	2 cut(s)	326, 336
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	8 cut(s)	141, 234, 270, 283, 292, 496, 682, 688
SfaNI	GCATC	3 cut(s)	43, 274, 490
SinI	GGWCC	1 cut(s)	326
SphI	GCATGC	1 cut(s)	250
Sse9I	AATT	8 cut(s)	159, 165, 197, 320, 408, 443, 557, 601
SspMI	CTAG	2 cut(s)	615, 681
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	222
TasI	AATT	8 cut(s)	159, 165, 197, 320, 408, 443, 557, 601
Tru1I	TTAA	4 cut(s)	257, 366, 600, 705
Tru9I	TTAA	4 cut(s)	257, 366, 600, 705
TscAI	CASTG	2 cut(s)	257, 483
TseI	GCWGC	6 cut(s)	35, 73, 287, 290, 343, 553
TspDTI	ATGAA	2 cut(s)	683, 737
TspRI	CASTG	2 cut(s)	257, 483
VpaK11BI	GGWCC	1 cut(s)	326
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	3 cut(s)	250, 407, 573
XspI	CTAG	2 cut(s)	615, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.