Rh3DG305700

pyrophosphate-energized membrane proton pump

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001174
Physical Location & Seq
Reverse (-)
32466285 .. 32467667
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG305700.1

Sequence Viewer

Length: 252 bp
ATGGACAAGGACAAGAGCAGTACCGATCTACTCGCTGCTGGCCGTAAAAAGGAATATAAGGAGAAGCCAGATTATGCACGTTGTGTTGCTATTGTAGCATCTGCATCTTTGAGGGAGATGATAAAACCTGGTGCCTTGGCTATTATTTCACCTATAGCAGTTGGTATTGAGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAATGATTGTCATAAGGCTGCAATTACAGGAGACATGTAAGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
H_PPase

Protein Analysis

83

Amino Acids

9.27

Weight (kDa)

8.95

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
H_PPase PF03030 18 - 58 3.4e-10 Inorganic H+ pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 131
AccIII TCCGGA 2 cut(s) 174, 193
AcoI YGGCCR 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 239
AjnI CCWGG 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 230
Aor13HI TCCGGA 2 cut(s) 174, 193
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 35, 223
AsuHPI GGTGA 1 cut(s) 141
BanI GGYRCC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 22, 210
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 153
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 2 cut(s) 36, 224
BlsI GCNGC 2 cut(s) 37, 225
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 107, 113
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 174, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseAI TCCGGA 2 cut(s) 174, 193
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 22, 210
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 2 cut(s) 175, 194
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 1 cut(s) 42
Bsp13I TCCGGA 2 cut(s) 174, 193
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 1 cut(s) 42
BspEI TCCGGA 2 cut(s) 174, 193
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 22, 210
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 1 cut(s) 21
CviAII CATG 1 cut(s) 240
CviJI RGCY 4 cut(s) 42, 67, 140, 223
CviKI_1 RGCY 4 cut(s) 42, 67, 140, 223
CviQI GTAC 1 cut(s) 21
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 83
DrdI GACNNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 243
FaiI YATR 5 cut(s) 57, 75, 155, 218, 241
FatI CATG 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 36, 224
Fsp4HI GCNGC 2 cut(s) 36, 224
GluI GCNGC 2 cut(s) 36, 224
HaeIII GGCC 1 cut(s) 42
HapII CCGG 2 cut(s) 175, 194
Hin1II CATG 1 cut(s) 243
HpaII CCGG 2 cut(s) 175, 194
HphI GGTGA 1 cut(s) 141
Hpy188III TCNNGA 3 cut(s) 175, 194, 249
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 77, 104, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 243
Kpn2I TCCGGA 2 cut(s) 174, 193
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 7 cut(s) 24, 81, 114, 141, 188, 207, 218
Lsp1109I GCAGC 2 cut(s) 22, 210
LweI GCATC 2 cut(s) 107, 113
MabI ACCWGGT 1 cut(s) 127
MaeII ACGT 1 cut(s) 79
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MluCI AATT 1 cut(s) 227
MnlI CCTC 2 cut(s) 105, 190
MroI TCCGGA 2 cut(s) 174, 193
MspI CCGG 2 cut(s) 175, 194
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 243
NlaIV GGNNCC 1 cut(s) 133
NspI RCATGY 1 cut(s) 243
PciI ACATGT 1 cut(s) 239
PkrI GCNGC 2 cut(s) 37, 225
PscI ACATGT 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 133
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SatI GCNGC 2 cut(s) 36, 224
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 129
SetI ASST 3 cut(s) 82, 130, 154
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 2 cut(s) 107, 113
SfcI CTRYAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 1 cut(s) 82
TasI AATT 1 cut(s) 227
TseI GCWGC 2 cut(s) 35, 223
XceI RCATGY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.