Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

52850834 .. 52852870

Gene Structure 2037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG387200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGACAAGGACAAGAGCCGTACCGATCTGCTCGCTGCTGGCCGTAAAAAGGAATTGTCAACAGATTCATCCCAGCACGTTCGCTCTGCATTGGCTTCAGTGATAATGGGAATGGCACCAGTTTTAGGAAAGGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTCTCAAAGATGAGTTTCCAGATGTCCGGCTGAACATTATTAGCAAGCTTGATCAAGTCAACCAGGGAATTGGAATTGATCTGTTGTCCCAGTCTCTACTGCCAGCAATTGTGGAACTGGCAGAGGATAGACATTGGAGGGTTCGGCTTGCGATAATAGAATATATCCCTTTATTGGCAAGTCAGTTGGGTGTGGGGTTTTTTGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGGTCCTGATTGGGCCATGCAGCATATAGTCCCACAGGTTTTGGAAATGATTAACAACCCTCACTATTTGTATCGGATGACCATTCTACATGCAATTTCCCTACTTGCCCCTGTTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTGGTTATCACTGCATCAAAAGATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0008287 GO:0010035 GO:0010038 GO:0016020 GO:0019220 GO:0019222 GO:0030312 GO:0031323 GO:0032991 GO:0042221 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051174 GO:0065007 GO:0071944 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

218

Amino Acids

24.3

Weight (kDa)

5.95

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPP2R1A-like_HEAT	PF22646	16 - 43	2.3e-08	PPP2R1A-like HEAT repeat
HEAT_2	PF13646	53 - 149	4.8e-06	HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	604
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	5 cut(s)	49, 125, 346, 592, 593
AgeI	ACCGGT	1 cut(s)	625
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	3 cut(s)	220, 385, 443
AluI	AGCT	3 cut(s)	220, 385, 443
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	604
AoxI	GGCC	2 cut(s)	40, 489
ApeKI	GCWGC	5 cut(s)	35, 154, 440, 443, 496
ApoI	RAATTY	1 cut(s)	473
AsiGI	ACCGGT	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	479, 489
AvaII	GGWCC	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	115
BbvI	GCAGC	5 cut(s)	22, 141, 430, 452, 508
BceAI	ACGGC	2 cut(s)	3, 27
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	463
BisI	GCNGC	5 cut(s)	36, 155, 441, 444, 497
BlsI	GCNGC	5 cut(s)	37, 156, 442, 445, 498
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	479, 489
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	3 cut(s)	124, 427, 650
BmuI	ACTGGG	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 125, 346, 592, 593
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	3 cut(s)	119, 262, 294
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	3 cut(s)	68, 139, 558
BseLI	CCNNNNNNNGG	5 cut(s)	49, 125, 346, 592, 593
BseNI	ACTGG	3 cut(s)	119, 262, 294
BseXI	GCAGC	5 cut(s)	22, 141, 430, 452, 508
BseYI	CCCAGC	1 cut(s)	72
BshFI	GGCC	2 cut(s)	42, 491
BshNI	GGYRCC	1 cut(s)	115
BshTI	ACCGGT	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	199, 626
BslFI	GGGAC	2 cut(s)	244, 491
BslI	CCNNNNNNNGG	5 cut(s)	49, 125, 346, 592, 593
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	244, 491
BsnI	GGCC	2 cut(s)	42, 491
Bsp143I	GATC	4 cut(s)	25, 223, 250, 596
BspANI	GGCC	2 cut(s)	42, 491
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	3 cut(s)	119, 262, 294
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	4 cut(s)	25, 223, 250, 596
Bst2UI	CCWGG	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	6 cut(s)	33, 40, 218, 276, 321, 401
BstF5I	GGATG	3 cut(s)	68, 139, 558
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	4 cut(s)	28, 226, 253, 599
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	4 cut(s)	25, 223, 250, 596
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	403, 569
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	5 cut(s)	22, 141, 430, 452, 508
BstXI	CCANNNNNNTGG	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	42, 491
BtsCI	GGATG	3 cut(s)	68, 139, 558
BtsI	GCAGTG	2 cut(s)	410, 636
BtsIMutI	CAGTG	3 cut(s)	105, 410, 636
Cac8I	GCNNGC	6 cut(s)	33, 40, 218, 276, 321, 401
CfoI	GCGC	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	2 cut(s)	479, 489
Csp6I	GTAC	1 cut(s)	21
CspAI	ACCGGT	1 cut(s)	625
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	3 cut(s)	400, 493, 566
CviJI	RGCY	9 cut(s)	18, 42, 95, 202, 220, 319, 385, 443, 491
CviKI_1	RGCY	9 cut(s)	18, 42, 95, 202, 220, 319, 385, 443, 491
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	4 cut(s)	27, 225, 252, 598
DpnII	GATC	4 cut(s)	25, 223, 250, 596
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	234
FaeI	CATG	3 cut(s)	403, 496, 569
FaiI	YATR	8 cut(s)	143, 336, 401, 494, 501, 503, 567, 593
FaqI	GGGAC	2 cut(s)	244, 491
FatI	CATG	3 cut(s)	399, 492, 565
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	36, 155, 441, 444, 497
FokI	GGATG	3 cut(s)	55, 146, 565
Fsp4HI	GCNGC	5 cut(s)	36, 155, 441, 444, 497
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	5 cut(s)	36, 155, 441, 444, 497
GsaI	CCCAGC	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	42, 491
HapII	CCGG	2 cut(s)	199, 626
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	403, 496, 569
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	2 cut(s)	60, 232
HindII	GTYRAC	2 cut(s)	60, 232
HindIII	AAGCTT	2 cut(s)	218, 383
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	2 cut(s)	199, 626
Hpy166II	GTNNAC	3 cut(s)	60, 232, 424
Hpy188I	TCNGA	2 cut(s)	552, 601
Hpy188III	TCNNGA	2 cut(s)	191, 482
Hpy8I	GTNNAC	3 cut(s)	60, 232, 424
HpyCH4IV	ACGT	2 cut(s)	78, 433
HpyCH4V	TGCA	9 cut(s)	89, 137, 399, 403, 440, 467, 496, 569, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpySE526I	ACGT	2 cut(s)	78, 433
Hsp92II	CATG	3 cut(s)	403, 496, 569
HspAI	GCGC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	25, 223, 250, 596
Lsp1109I	GCAGC	5 cut(s)	22, 141, 430, 452, 508
LweI	GCATC	3 cut(s)	124, 427, 650
MaeII	ACGT	2 cut(s)	78, 433
MalI	GATC	4 cut(s)	27, 225, 252, 598
MboI	GATC	4 cut(s)	25, 223, 250, 596
MboII	GAAGA	2 cut(s)	164, 482
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	7 cut(s)	53, 240, 246, 279, 473, 570, 603
MnlI	CCTC	3 cut(s)	289, 303, 546
MseI	TTAA	2 cut(s)	410, 528
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	199, 626
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	4 cut(s)	25, 223, 250, 596
NlaIII	CATG	3 cut(s)	403, 496, 569
NlaIV	GGNNCC	1 cut(s)	117
NspI	RCATGY	2 cut(s)	403, 569
PaeI	GCATGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	625
PkrI	GCNGC	5 cut(s)	37, 156, 442, 445, 498
Ppu21I	YACGTR	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	2 cut(s)	479, 489
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	410, 528
SatI	GCNGC	5 cut(s)	36, 155, 441, 444, 497
Sau3AI	GATC	4 cut(s)	25, 223, 250, 596
Sau96I	GGNCC	2 cut(s)	479, 489
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	8 cut(s)	81, 222, 387, 423, 436, 445, 516, 656
SfaNI	GCATC	3 cut(s)	124, 427, 650
SinI	GGWCC	1 cut(s)	479
SphI	GCATGC	1 cut(s)	403
Sse9I	AATT	7 cut(s)	53, 240, 246, 279, 473, 570, 603
StyD4I	CCNGG	1 cut(s)	234
TaiI	ACGT	2 cut(s)	81, 436
TasI	AATT	7 cut(s)	53, 240, 246, 279, 473, 570, 603
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	410, 528
Tru9I	TTAA	2 cut(s)	410, 528
TscAI	CASTG	3 cut(s)	105, 410, 643
TseI	GCWGC	5 cut(s)	35, 154, 440, 443, 496
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	105, 410, 643
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	2 cut(s)	403, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.