Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

76778230 .. 76778894

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG551100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGATAAGGCTACATGTGACGAACTTGGGATCACTTCGATTGCCTATTCACCTATTGCTCAAGGAATATAAGGAGAACCCAGATTATGCACGTTGTGTTGCTATTGTAGCATCTGCATCTTTGAGGGAGATGATAAAACCTGGTGCCTTAGCTATTATTTCACCTATAGCAGCAAAGGAAGTGATTGTCATAAGGGTGCAATTACAGGAGACATGGCTTTCCCTCCTTGAATATCCAGTGGTGAAACCCACAAATCCAGCTTATGCTTTGCCAATTGATGTTGTAAATATGATTATCTTAGCAGGCATAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

106

Amino Acids

11.78

Weight (kDa)

7.88

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	21 - 62	1e-08	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	40
AdeI	CACNNNGTG	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	155, 263
AluI	AGCT	2 cut(s)	155, 263
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	44, 156, 256
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	122, 128
Bpu10I	CCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	151, 301
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	307
CsiI	ACCWGGT	1 cut(s)	142
CviAII	CATG	2 cut(s)	17, 216
CviJI	RGCY	4 cut(s)	13, 155, 220, 263
CviKI_1	RGCY	4 cut(s)	13, 155, 220, 263
DdeI	CTNAG	2 cut(s)	151, 301
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
DraIII	CACNNNGTG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	20, 219
FaiI	YATR	9 cut(s)	18, 72, 90, 170, 194, 217, 267, 293, 311
FatI	CATG	2 cut(s)	16, 215
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	20, 219
HphI	GGTGA	3 cut(s)	44, 156, 256
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	92, 119, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	151, 301
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	20, 219
Kzo9I	GATC	1 cut(s)	32
LpnPI	CCDG	7 cut(s)	96, 129, 156, 194, 252, 273, 291
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	2 cut(s)	122, 128
MabI	ACCWGGT	1 cut(s)	142
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MfeI	CAATTG	1 cut(s)	276
MluCI	AATT	2 cut(s)	203, 276
MnlI	CCTC	2 cut(s)	120, 236
MslI	CAYNNNNRTG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	2 cut(s)	20, 219
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	20
PciI	ACATGT	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	175
PscI	ACATGT	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	197
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	6 cut(s)	57, 97, 145, 157, 169, 265
SexAI	ACCWGGT	1 cut(s)	142
SfaNI	GCATC	2 cut(s)	122, 128
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	203, 276
StyD4I	CCNGG	1 cut(s)	142
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	203, 276
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	19
TspRI	CASTG	1 cut(s)	246
XceI	RCATGY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.