Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

26134393 .. 26150486

Gene Structure 16094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG280600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGTCATGCCTGGGTATTTCTGGATTTACTGTTTTTAAGTATCGTCTCAAGCGGCTTGAGGGGCAGCCACTGTTAACCACTAACCAGATTCAATTTGTTAATGGACGTGTACCACAATCTATATCAGAAATACGAGGGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCAATGATCCGCCTGTTGCTCCTACAGGCAAGTTGATAATGTTCATGGAGTATTGCGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGGCTGCAATTACAGGAGACATAGTGGGAGACCCATTCAAAGACACAGCTGGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGTTGGTCATGGCTCCTGTCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

142

Amino Acids

15.3

Weight (kDa)

5.6

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	95 - 137	4.6e-17	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	262, 281
AciI	CCGC	2 cut(s)	55, 212
AclWI	GGATC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	114
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	95, 346
AjiI	CACGTC	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	2 cut(s)	191, 356
AluI	AGCT	2 cut(s)	191, 356
Alw26I	GTCTC	3 cut(s)	53, 318, 330
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	73
Aor13HI	TCCGGA	2 cut(s)	262, 281
ApeKI	GCWGC	2 cut(s)	67, 311
AspS9I	GGNCC	1 cut(s)	359
AsuNHI	GCTAGC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	79, 298
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	3 cut(s)	53, 318, 330
BfaI	CTAG	2 cut(s)	170, 192
BfmI	CTRYAG	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	267
BisI	GCNGC	3 cut(s)	56, 68, 312
BlsI	GCNGC	3 cut(s)	57, 69, 313
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	14
BmrI	ACTGGG	1 cut(s)	171
BmtI	GCTAGC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	35, 80
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	13
BsaWI	WCCGGW	2 cut(s)	262, 281
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bse1I	ACTGG	1 cut(s)	166
BseAI	TCCGGA	2 cut(s)	262, 281
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	13
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	79, 298
BsiSI	CCGG	2 cut(s)	263, 282
BsmAI	GTCTC	3 cut(s)	53, 318, 330
BsmBI	CGTCTC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	330
Bsp13I	TCCGGA	2 cut(s)	262, 281
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	2 cut(s)	55, 212
BspEI	TCCGGA	2 cut(s)	262, 281
BspLI	GGNNCC	1 cut(s)	414
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	34, 75
BstC8I	GCNNGC	2 cut(s)	193, 390
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	3 cut(s)	53, 318, 330
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 188
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	79, 298
BsuI	GTATCC	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	193, 390
CaiI	CAGNNNCTG	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	4 cut(s)	9, 247, 371, 409
CviJI	RGCY	6 cut(s)	58, 70, 191, 311, 356, 413
CviKI_1	RGCY	6 cut(s)	58, 70, 191, 311, 356, 413
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	4 cut(s)	12, 250, 374, 412
FaiI	YATR	8 cut(s)	10, 125, 158, 248, 306, 329, 372, 410
FatI	CATG	4 cut(s)	8, 246, 370, 408
Fnu4HI	GCNGC	3 cut(s)	56, 68, 312
Fsp4HI	GCNGC	3 cut(s)	56, 68, 312
FspBI	CTAG	2 cut(s)	170, 192
GluI	GCNGC	3 cut(s)	56, 68, 312
HapII	CCGG	2 cut(s)	263, 282
Hin1II	CATG	4 cut(s)	12, 250, 374, 412
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	5, 91
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	263, 282
Hpy166II	GTNNAC	2 cut(s)	78, 113
Hpy188I	TCNGA	2 cut(s)	130, 428
Hpy188III	TCNNGA	4 cut(s)	24, 170, 263, 282
Hpy8I	GTNNAC	2 cut(s)	78, 113
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	2 cut(s)	34, 75
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 188
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	4 cut(s)	12, 250, 374, 412
Kpn2I	TCCGGA	2 cut(s)	262, 281
KspAI	GTTAAC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	226, 418
Lsp1109I	GCAGC	2 cut(s)	79, 298
MaeI	CTAG	2 cut(s)	170, 192
MaeII	ACGT	1 cut(s)	109
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MluCI	AATT	3 cut(s)	95, 196, 315
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	5 cut(s)	55, 131, 145, 166, 278
MroI	TCCGGA	2 cut(s)	262, 281
MseI	TTAA	4 cut(s)	39, 77, 102, 381
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	2 cut(s)	263, 282
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	64, 188
NdeII	GATC	1 cut(s)	208
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	4 cut(s)	12, 250, 374, 412
NlaIV	GGNNCC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	57, 69, 313
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	4 cut(s)	39, 77, 102, 381
SatI	GCNGC	3 cut(s)	56, 68, 312
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	4 cut(s)	112, 193, 358, 364
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	50, 59
SmoI	CTYRAG	2 cut(s)	50, 59
Sse9I	AATT	3 cut(s)	95, 196, 315
SsiI	CCGC	2 cut(s)	55, 212
SspMI	CTAG	2 cut(s)	170, 192
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	34, 75
TaiI	ACGT	1 cut(s)	112
TasI	AATT	3 cut(s)	95, 196, 315
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	4 cut(s)	39, 77, 102, 381
Tru9I	TTAA	4 cut(s)	39, 77, 102, 381
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	2 cut(s)	67, 311
TspDTI	ATGAA	2 cut(s)	235, 359
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	359
XbaI	TCTAGA	1 cut(s)	169
XspI	CTAG	2 cut(s)	170, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.