RchiOBHm_Chr1g0328271

Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001174
Physical Location & Seq
Forward (+)
17619615 .. 17621165
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55770

Sequence Viewer

Length: 819 bp
ATGGTTGTTGTGATGTTGACATTCTTTAGGTCAGACCTGGTGCCTGCCTATGTTCGACTTCTTCGCGATAATGAGGCTGAGGTGCGGATTGCTGCTGCAGGAAAAATAACCAAGTTTTACCGAATTTTGGACCCAGAACTTGCCGTTCAGCAAATCCTACCATTTGTTAAGGAATTGTCAACAGATTCATCCCAGCACGTTCGCTCTGCATTGGCTTCAGTGATAATGGGAATGGCACCAGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTCTCAAAGATGAGTTTCCAGATGTCCGGCTGAACATTATTAGCAAGCTTGATCAAGTCAACCAGGGAATTGGAATTGATCTGCTGTCCCAGTCTCTACTGCCAGCAATTGTGGAACTGGCAGAGGATAGACATTGGAGGGTTCGGCTTGCGATAATAGAATATATCCCTTTATTGGCAAGTCAGTTGGGTGTGGGGTTTTTCGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGAAAGCCAAGAAGAAGAAGAAAAAGAACTTGATGCTTCTGCTTTTTGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGGTCCTGATTGGGCCATGCAGCATATAGTCCCACAGGTTTTGGAAATGATTAACAACCCTCACTATTTGTATCGGATGACCATTCTACATGCAATTCCCTACTTGCCCCTGCTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTGGTTATCACTGCATCAAAAGATAGGTAAATATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000159 GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006914 GO:0006915 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007098 GO:0007099 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008287 GO:0009056 GO:0009653 GO:0009790 GO:0009792 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010646 GO:0010647 GO:0010648 GO:0010921 GO:0010941 GO:0010942 GO:0012501 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016311 GO:0017151 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023056 GO:0023057 GO:0030234 GO:0031023 GO:0031323 GO:0031399 GO:0031967 GO:0031975 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0035330 GO:0035331 GO:0035770 GO:0036211 GO:0036464 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045121 GO:0045495 GO:0046626 GO:0046627 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051225 GO:0051246 GO:0051298 GO:0051336 GO:0060255 GO:0060293 GO:0060561 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0072686 GO:0080090 GO:0098534 GO:0098589 GO:0098772 GO:0098805 GO:0098857 GO:1900076 GO:1900077 GO:1901564 GO:1902494 GO:1902531 GO:1902532 GO:1902742 GO:1903293 GO:1990904 GO:2001233 GO:2001235 GO:2001236 GO:2001238 GO:2001239 GO:2001241
KEGG Pathways
Metabolic & Signaling
ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165
Pfam Domains
Protein Families
HEAT HEAT_2

Protein Analysis

272

Amino Acids

31.31

Weight (kDa)

8.99

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPP2R1A-like_HEAT PF22646 10 - 80 6.3e-26 PPP2R1A-like HEAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 40, 235
AccII CGCG 1 cut(s) 66
AciI CCGC 1 cut(s) 85
AclWI GGATC 1 cut(s) 756
AcsI RAATTY 2 cut(s) 123, 626
AcuI CTGAAG 1 cut(s) 201
AfiI CCNNNNNNNGG 4 cut(s) 127, 454, 744, 745
AgeI ACCGGT 1 cut(s) 777
AjnI CCWGG 2 cut(s) 36, 342
AluBI AGCT 3 cut(s) 328, 493, 596
AluI AGCT 3 cut(s) 328, 493, 596
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 1 cut(s) 756
AoxI GGCC 1 cut(s) 642
ApeKI GCWGC 6 cut(s) 92, 95, 262, 593, 596, 649
ApoI RAATTY 2 cut(s) 123, 626
AsiGI ACCGGT 1 cut(s) 777
AspLEI GCGC 1 cut(s) 615
AspS9I GGNCC 3 cut(s) 130, 632, 642
AvaII GGWCC 2 cut(s) 130, 632
BanI GGYRCC 2 cut(s) 40, 235
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 6 cut(s) 79, 82, 249, 583, 605, 661
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 2 cut(s) 38, 344
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 1 cut(s) 817
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 616
BisI GCNGC 6 cut(s) 93, 96, 263, 594, 597, 650
BlsI GCNGC 6 cut(s) 94, 97, 264, 595, 598, 651
Bme1390I CCNGG 2 cut(s) 38, 344
Bme18I GGWCC 2 cut(s) 130, 632
BmgT120I GGNCC 3 cut(s) 130, 632, 642
BmiI GGNNCC 3 cut(s) 42, 132, 237
BmrFI CCNGG 2 cut(s) 38, 344
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 4 cut(s) 232, 549, 580, 802
BmuI ACTGGG 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 343
BsaWI WCCGGW 1 cut(s) 777
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 454, 744, 745
Bse118I RCCGGY 1 cut(s) 777
Bse1I ACTGG 2 cut(s) 370, 402
BseBI CCWGG 2 cut(s) 38, 344
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 2 cut(s) 188, 711
BseLI CCNNNNNNNGG 4 cut(s) 127, 454, 744, 745
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 370, 402
BseXI GCAGC 6 cut(s) 79, 82, 249, 583, 605, 661
BseYI CCCAGC 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 644
BshNI GGYRCC 2 cut(s) 40, 235
BshTI ACCGGT 1 cut(s) 777
BsiSI CCGG 2 cut(s) 307, 778
BslFI GGGAC 2 cut(s) 352, 644
BslI CCNNNNNNNGG 4 cut(s) 127, 454, 744, 745
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 2 cut(s) 352, 644
BsnI GGCC 1 cut(s) 644
Bsp143I GATC 3 cut(s) 331, 358, 748
Bsp68I TCGCGA 1 cut(s) 66
BspACI CCGC 1 cut(s) 85
BspANI GGCC 1 cut(s) 644
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 42, 132, 237
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 1 cut(s) 756
BspT107I GGYRCC 2 cut(s) 40, 235
BsrFI RCCGGY 1 cut(s) 777
BsrI ACTGG 2 cut(s) 370, 402
BssAI RCCGGY 1 cut(s) 777
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 3 cut(s) 331, 358, 748
Bst2UI CCWGG 2 cut(s) 38, 344
Bst6I CTCTTC 1 cut(s) 285
BstAPI GCANNNNNTGC 2 cut(s) 242, 262
BstBAI YACGTR 1 cut(s) 587
BstC8I GCNNGC 5 cut(s) 45, 326, 384, 429, 509
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 188, 711
BstFNI CGCG 1 cut(s) 66
BstH2I RGCGCY 1 cut(s) 616
BstHHI GCGC 1 cut(s) 615
BstKTI GATC 3 cut(s) 334, 361, 751
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 3 cut(s) 331, 358, 748
BstMWI GCNNNNNNNGC 2 cut(s) 242, 262
BstNI CCWGG 2 cut(s) 38, 344
BstNSI RCATGY 2 cut(s) 511, 722
BstSCI CCNGG 2 cut(s) 36, 342
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 6 cut(s) 79, 82, 249, 583, 605, 661
BstXI CCANNNNNNTGG 1 cut(s) 350
BsuRI GGCC 1 cut(s) 644
BtsCI GGATG 2 cut(s) 188, 711
BtsI GCAGTG 2 cut(s) 518, 788
BtsIMutI CAGTG 3 cut(s) 225, 518, 788
BtuMI TCGCGA 1 cut(s) 66
Cac8I GCNNGC 5 cut(s) 45, 326, 384, 429, 509
CfoI GCGC 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 777
Cfr13I GGNCC 3 cut(s) 130, 632, 642
CsiI ACCWGGT 1 cut(s) 36
CspAI ACCGGT 1 cut(s) 777
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 3 cut(s) 508, 646, 719
CviJI RGCY 9 cut(s) 77, 215, 310, 328, 427, 493, 533, 596, 644
CviKI_1 RGCY 9 cut(s) 77, 215, 310, 328, 427, 493, 533, 596, 644
DdeI CTNAG 1 cut(s) 78
DpnI GATC 3 cut(s) 333, 360, 750
DpnII GATC 3 cut(s) 331, 358, 748
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco47I GGWCC 2 cut(s) 130, 632
Eco57I CTGAAG 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 36, 342
FaeI CATG 3 cut(s) 511, 649, 722
FaiI YATR 9 cut(s) 51, 251, 444, 509, 647, 654, 656, 720, 745
FaqI GGGAC 2 cut(s) 352, 644
FatI CATG 3 cut(s) 507, 645, 718
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 6 cut(s) 93, 96, 263, 594, 597, 650
FokI GGATG 2 cut(s) 175, 718
Fsp4HI GCNGC 6 cut(s) 93, 96, 263, 594, 597, 650
FspBI CTAG 1 cut(s) 817
GlaI GCGC 1 cut(s) 614
GluI GCNGC 6 cut(s) 93, 96, 263, 594, 597, 650
GsaI CCCAGC 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 616
HaeIII GGCC 1 cut(s) 644
HapII CCGG 2 cut(s) 307, 778
HhaI GCGC 1 cut(s) 615
Hin1II CATG 3 cut(s) 511, 649, 722
Hin6I GCGC 1 cut(s) 613
HinP1I GCGC 1 cut(s) 613
HincII GTYRAC 3 cut(s) 18, 180, 340
HindII GTYRAC 3 cut(s) 18, 180, 340
HindIII AAGCTT 2 cut(s) 326, 491
HinfI GANTC 1 cut(s) 185
HpaII CCGG 2 cut(s) 307, 778
Hpy166II GTNNAC 4 cut(s) 18, 180, 340, 577
Hpy188I TCNGA 3 cut(s) 34, 705, 753
Hpy188III TCNNGA 3 cut(s) 65, 299, 635
Hpy8I GTNNAC 4 cut(s) 18, 180, 340, 577
HpyCH4IV ACGT 2 cut(s) 198, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 262
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 2 cut(s) 198, 586
Hsp92II CATG 3 cut(s) 511, 649, 722
HspAI GCGC 1 cut(s) 613
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 3 cut(s) 331, 358, 748
Lsp1109I GCAGC 6 cut(s) 79, 82, 249, 583, 605, 661
LweI GCATC 4 cut(s) 232, 549, 580, 802
MabI ACCWGGT 1 cut(s) 36
MaeI CTAG 1 cut(s) 817
MaeII ACGT 2 cut(s) 198, 586
MalI GATC 3 cut(s) 333, 360, 750
MboI GATC 3 cut(s) 331, 358, 748
MboII GAAGA 6 cut(s) 53, 272, 550, 553, 556, 635
MfeI CAATTG 1 cut(s) 387
MluCI AATT 8 cut(s) 123, 173, 348, 354, 387, 626, 723, 755
MnlI CCTC 5 cut(s) 67, 73, 397, 411, 699
MseI TTAA 3 cut(s) 168, 518, 681
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 2 cut(s) 307, 778
MspR9I CCNGG 2 cut(s) 38, 344
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 2 cut(s) 38, 344
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 242, 262
NdeII GATC 3 cut(s) 331, 358, 748
NlaIII CATG 3 cut(s) 511, 649, 722
NlaIV GGNNCC 3 cut(s) 42, 132, 237
NruI TCGCGA 1 cut(s) 66
NspI RCATGY 2 cut(s) 511, 722
PaeI GCATGC 1 cut(s) 511
PfeI GAWTC 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 777
PkrI GCNGC 6 cut(s) 94, 97, 264, 595, 598, 651
Ppu21I YACGTR 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 36, 342
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 2 cut(s) 36, 342
PspN4I GGNNCC 3 cut(s) 42, 132, 237
PspPI GGNCC 3 cut(s) 130, 632, 642
PstI CTGCAG 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 596
RruI TCGCGA 1 cut(s) 66
SaqAI TTAA 3 cut(s) 168, 518, 681
SatI GCNGC 6 cut(s) 93, 96, 263, 594, 597, 650
Sau3AI GATC 3 cut(s) 331, 358, 748
Sau96I GGNCC 3 cut(s) 130, 632, 642
ScrFI CCNGG 2 cut(s) 38, 344
SexAI ACCWGGT 1 cut(s) 36
SfaNI GCATC 4 cut(s) 232, 549, 580, 802
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 2 cut(s) 130, 632
SphI GCATGC 1 cut(s) 511
Sse9I AATT 8 cut(s) 123, 173, 348, 354, 387, 626, 723, 755
SsiI CCGC 1 cut(s) 85
SspI AATATT 1 cut(s) 812
SspMI CTAG 1 cut(s) 817
StyD4I CCNGG 2 cut(s) 36, 342
TaiI ACGT 2 cut(s) 201, 589
TaqI TCGA 2 cut(s) 55, 483
TasI AATT 8 cut(s) 123, 173, 348, 354, 387, 626, 723, 755
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 168, 518, 681
Tru9I TTAA 3 cut(s) 168, 518, 681
TscAI CASTG 3 cut(s) 225, 518, 795
TseI GCWGC 6 cut(s) 92, 95, 262, 593, 596, 649
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 3 cut(s) 225, 518, 795
VpaK11BI GGWCC 2 cut(s) 130, 632
XapI RAATTY 2 cut(s) 123, 626
XceI RCATGY 2 cut(s) 511, 722
XspI CTAG 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.