Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

17899084 .. 17902629

Gene Structure 3546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1108800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGTCGCGAATCAATTATACGAGTTGTGTGACATTGTTGGTCTAGAAGCTACAAGGTTGGACCTGGTGCCTTCATATGTTCGGCTTCAACGAGATAATGAGGCTGAAGTACGAATAGCTGCTGCAGGAAAGGTCATACTCTGCTTCCCACTCCTTGTACCTAGTATCGGTAAGAACCCTCTCAAAGTTTGTGAAAAATTGAACAATATTGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

No domains found.

Protein Analysis

73

Amino Acids

7.99

Weight (kDa)

5.25

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPP2R1A-like_HEAT	PF22646	18 - 46	2.4e-06	PPP2R1A-like HEAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccII	CGCG	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	2 cut(s)	111, 159
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	89, 202
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	2 cut(s)	50, 119
AluI	AGCT	2 cut(s)	50, 119
ApeKI	GCWGC	2 cut(s)	119, 122
AspS9I	GGNCC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	106, 109
BciT130I	CCWGG	1 cut(s)	65
BfaI	CTAG	2 cut(s)	44, 162
BfmI	CTRYAG	1 cut(s)	123
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	2 cut(s)	120, 123
BlsI	GCNGC	2 cut(s)	121, 124
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	106, 109
Bsh1236I	CGCG	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	213
Bsp68I	TCGCGA	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	67
BssMI	GATC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	106, 109
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BtuMI	TCGCGA	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	61
CsiI	ACCWGGT	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	110, 158
CviJI	RGCY	4 cut(s)	50, 85, 104, 119
CviKI_1	RGCY	4 cut(s)	50, 85, 104, 119
CviQI	GTAC	2 cut(s)	110, 158
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	63
FaiI	YATR	4 cut(s)	19, 76, 78, 137
FauNDI	CATATG	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	120, 123
Fsp4HI	GCNGC	2 cut(s)	120, 123
FspBI	CTAG	2 cut(s)	44, 162
GluI	GCNGC	2 cut(s)	120, 123
HinfI	GANTC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	2 cut(s)	7, 44
HpyAV	CCTTC	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	213
LpnPI	CCDG	3 cut(s)	50, 77, 111
Lsp1109I	GCAGC	2 cut(s)	106, 109
MabI	ACCWGGT	1 cut(s)	63
MaeI	CTAG	2 cut(s)	44, 162
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	2 cut(s)	14, 197
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	2 cut(s)	94, 189
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	8
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	29
NruI	TCGCGA	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	121, 124
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	213
RruI	TCGCGA	1 cut(s)	8
RsaI	GTAC	2 cut(s)	111, 159
RsaNI	GTAC	2 cut(s)	110, 158
SatI	GCNGC	2 cut(s)	120, 123
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	6 cut(s)	52, 59, 66, 121, 135, 163
SexAI	ACCWGGT	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	2 cut(s)	14, 197
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	2 cut(s)	44, 162
StyD4I	CCNGG	1 cut(s)	63
TasI	AATT	2 cut(s)	14, 197
TfiI	GAWTC	1 cut(s)	10
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	119, 122
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	61
XbaI	TCTAGA	1 cut(s)	43
XspI	CTAG	2 cut(s)	44, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.