Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

58085791 .. 58087333

Gene Structure 1543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40272

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGTTGTTGTGATGTTGACATTCTTTAGGTCAGACCTGGTGCCTGCCTATGTTCGACTTCTTCGCGATAATGAGGCTGAGGTGCGGATTGCTGCTGCAGGAAAAGTAACCAAGTTTTGCCGAATTTTGGACCCAGAACTTGCCGTTCAGCAAATCCTACCATTTGTTAAGGAATTGTCAACAGATTCATCCCAGCACGTTCGCTCTGCATTGGCTTCAGTGATAATGGGAATGGCACCAGTTTTAGGAAAGGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTCTCAAAGATGAGTTTCCAGATGTCCGGCTGAACATTATTAGCAAGCTTGATCAAGTCAACCAGGGAATTGGAATTGATCTGCTGTCCCAGTCTCTACTGCCAGCAATTGTGGAACTGGCAGAGGATAGACATTGGAGGGTTCGGCTTGCGATAATAGAATATATCCCTTTATTGGCAAGTCAGTTGGGTGTGGGGTTTTTCGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGAAAGCCAAGAAGAAGAAGAAAAAGAACTTGATGCTTCTGCTTTTTGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGGTCCTGATTGGGCCATGCAGCATATAGTCCCACAGGTTTTGGAAATGATTAACAACCCTCACTATTTGTATCGGATGACCATTCTACATGCAATTTCCCTACTTGCCCCTGTTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTGGTTATCACTGCATCAAAAGATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

273

Amino Acids

30.67

Weight (kDa)

8.68

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPP2R1A-like_HEAT	PF22646	10 - 83	9.2e-29	PPP2R1A-like HEAT repeat
VPS15-like_hel	PF22956	74 - 269	6.4e-07	VPS15-like, helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	40, 235
AccII	CGCG	1 cut(s)	66
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	769
AcsI	RAATTY	2 cut(s)	123, 638
AcuI	CTGAAG	1 cut(s)	201
AfiI	CCNNNNNNNGG	5 cut(s)	127, 245, 466, 757, 758
AgeI	ACCGGT	1 cut(s)	790
AjnI	CCWGG	2 cut(s)	36, 354
AluBI	AGCT	3 cut(s)	340, 505, 608
AluI	AGCT	3 cut(s)	340, 505, 608
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	769
AoxI	GGCC	1 cut(s)	654
ApeKI	GCWGC	6 cut(s)	92, 95, 274, 605, 608, 661
ApoI	RAATTY	2 cut(s)	123, 638
AsiGI	ACCGGT	1 cut(s)	790
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	3 cut(s)	130, 644, 654
AvaII	GGWCC	2 cut(s)	130, 644
BanI	GGYRCC	2 cut(s)	40, 235
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	6 cut(s)	79, 82, 261, 595, 617, 673
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	2 cut(s)	38, 356
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	628
BisI	GCNGC	6 cut(s)	93, 96, 275, 606, 609, 662
BlsI	GCNGC	6 cut(s)	94, 97, 276, 607, 610, 663
Bme1390I	CCNGG	2 cut(s)	38, 356
Bme18I	GGWCC	2 cut(s)	130, 644
BmgT120I	GGNCC	3 cut(s)	130, 644, 654
BmiI	GGNNCC	3 cut(s)	42, 132, 237
BmrFI	CCNGG	2 cut(s)	38, 356
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	4 cut(s)	244, 561, 592, 815
BmuI	ACTGGG	1 cut(s)	376
Bpu10I	CCTNAGC	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 245, 466, 757, 758
Bse118I	RCCGGY	1 cut(s)	790
Bse1I	ACTGG	3 cut(s)	239, 382, 414
BseBI	CCWGG	2 cut(s)	38, 356
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	3 cut(s)	188, 259, 723
BseLI	CCNNNNNNNGG	5 cut(s)	127, 245, 466, 757, 758
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	239, 382, 414
BseXI	GCAGC	6 cut(s)	79, 82, 261, 595, 617, 673
BseYI	CCCAGC	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	656
BshNI	GGYRCC	2 cut(s)	40, 235
BshTI	ACCGGT	1 cut(s)	790
BsiSI	CCGG	2 cut(s)	319, 791
BslFI	GGGAC	2 cut(s)	364, 656
BslI	CCNNNNNNNGG	5 cut(s)	127, 245, 466, 757, 758
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	2 cut(s)	364, 656
BsnI	GGCC	1 cut(s)	656
Bsp143I	GATC	3 cut(s)	343, 370, 761
Bsp68I	TCGCGA	1 cut(s)	66
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	656
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	42, 132, 237
BspMAI	CTGCAG	1 cut(s)	100
BspPI	GGATC	1 cut(s)	769
BspT107I	GGYRCC	2 cut(s)	40, 235
BsrFI	RCCGGY	1 cut(s)	790
BsrI	ACTGG	3 cut(s)	239, 382, 414
BssAI	RCCGGY	1 cut(s)	790
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	3 cut(s)	343, 370, 761
Bst2UI	CCWGG	2 cut(s)	38, 356
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	5 cut(s)	45, 338, 396, 441, 521
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	188, 259, 723
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	3 cut(s)	346, 373, 764
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	3 cut(s)	343, 370, 761
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	2 cut(s)	38, 356
BstNSI	RCATGY	2 cut(s)	523, 734
BstSCI	CCNGG	2 cut(s)	36, 354
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	6 cut(s)	79, 82, 261, 595, 617, 673
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	656
BtsCI	GGATG	3 cut(s)	188, 259, 723
BtsI	GCAGTG	2 cut(s)	530, 801
BtsIMutI	CAGTG	3 cut(s)	225, 530, 801
BtuMI	TCGCGA	1 cut(s)	66
Cac8I	GCNNGC	5 cut(s)	45, 338, 396, 441, 521
CfoI	GCGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	790
Cfr13I	GGNCC	3 cut(s)	130, 644, 654
CsiI	ACCWGGT	1 cut(s)	36
CspAI	ACCGGT	1 cut(s)	790
CspCI	CAANNNNNGTGG	2 cut(s)	663, 698
CviAII	CATG	3 cut(s)	520, 658, 731
CviJI	RGCY	9 cut(s)	77, 215, 322, 340, 439, 505, 545, 608, 656
CviKI_1	RGCY	9 cut(s)	77, 215, 322, 340, 439, 505, 545, 608, 656
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	345, 372, 763
DpnII	GATC	3 cut(s)	343, 370, 761
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	130, 644
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	36, 354
FaeI	CATG	3 cut(s)	523, 661, 734
FaiI	YATR	9 cut(s)	51, 263, 456, 521, 659, 666, 668, 732, 758
FaqI	GGGAC	2 cut(s)	364, 656
FatI	CATG	3 cut(s)	519, 657, 730
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	6 cut(s)	93, 96, 275, 606, 609, 662
FokI	GGATG	3 cut(s)	175, 266, 730
Fsp4HI	GCNGC	6 cut(s)	93, 96, 275, 606, 609, 662
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	6 cut(s)	93, 96, 275, 606, 609, 662
GsaI	CCCAGC	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	1 cut(s)	656
HapII	CCGG	2 cut(s)	319, 791
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	3 cut(s)	523, 661, 734
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	3 cut(s)	18, 180, 352
HindII	GTYRAC	3 cut(s)	18, 180, 352
HindIII	AAGCTT	2 cut(s)	338, 503
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	319, 791
Hpy166II	GTNNAC	4 cut(s)	18, 180, 352, 589
Hpy188I	TCNGA	3 cut(s)	34, 717, 766
Hpy188III	TCNNGA	3 cut(s)	65, 311, 647
Hpy8I	GTNNAC	4 cut(s)	18, 180, 352, 589
HpyCH4IV	ACGT	2 cut(s)	198, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	2 cut(s)	198, 598
Hsp92II	CATG	3 cut(s)	523, 661, 734
HspAI	GCGC	1 cut(s)	625
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	343, 370, 761
Lsp1109I	GCAGC	6 cut(s)	79, 82, 261, 595, 617, 673
LweI	GCATC	4 cut(s)	244, 561, 592, 815
MabI	ACCWGGT	1 cut(s)	36
MaeII	ACGT	2 cut(s)	198, 598
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	3 cut(s)	345, 372, 763
MboI	GATC	3 cut(s)	343, 370, 761
MboII	GAAGA	6 cut(s)	53, 284, 562, 565, 568, 647
MfeI	CAATTG	1 cut(s)	399
MluCI	AATT	8 cut(s)	123, 173, 360, 366, 399, 638, 735, 768
MnlI	CCTC	5 cut(s)	67, 73, 409, 423, 711
MseI	TTAA	3 cut(s)	168, 530, 693
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	2 cut(s)	319, 791
MspR9I	CCNGG	2 cut(s)	38, 356
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	2 cut(s)	38, 356
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	3 cut(s)	343, 370, 761
NlaIII	CATG	3 cut(s)	523, 661, 734
NlaIV	GGNNCC	3 cut(s)	42, 132, 237
NruI	TCGCGA	1 cut(s)	66
NspI	RCATGY	2 cut(s)	523, 734
PaeI	GCATGC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	185
PinAI	ACCGGT	1 cut(s)	790
PkrI	GCNGC	6 cut(s)	94, 97, 276, 607, 610, 663
Ppu21I	YACGTR	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	36, 354
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	2 cut(s)	36, 354
PspN4I	GGNNCC	3 cut(s)	42, 132, 237
PspPI	GGNCC	3 cut(s)	130, 644, 654
PstI	CTGCAG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	608
RruI	TCGCGA	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	168, 530, 693
SatI	GCNGC	6 cut(s)	93, 96, 275, 606, 609, 662
Sau3AI	GATC	3 cut(s)	343, 370, 761
Sau96I	GGNCC	3 cut(s)	130, 644, 654
ScrFI	CCNGG	2 cut(s)	38, 356
SexAI	ACCWGGT	1 cut(s)	36
SfaNI	GCATC	4 cut(s)	244, 561, 592, 815
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	2 cut(s)	130, 644
SphI	GCATGC	1 cut(s)	523
Sse9I	AATT	8 cut(s)	123, 173, 360, 366, 399, 638, 735, 768
SsiI	CCGC	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	36, 354
TaiI	ACGT	2 cut(s)	201, 601
TaqI	TCGA	2 cut(s)	55, 495
TasI	AATT	8 cut(s)	123, 173, 360, 366, 399, 638, 735, 768
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	168, 530, 693
Tru9I	TTAA	3 cut(s)	168, 530, 693
TscAI	CASTG	3 cut(s)	225, 530, 808
TseI	GCWGC	6 cut(s)	92, 95, 274, 605, 608, 661
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	3 cut(s)	225, 530, 808
VpaK11BI	GGWCC	2 cut(s)	130, 644
XapI	RAATTY	2 cut(s)	123, 638
XceI	RCATGY	2 cut(s)	523, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.