Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Reverse (-)

71421754 .. 71433207

Gene Structure 11454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG537000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTTCAAGGTTGCTTCCGCTGAGAAGGCTCTCGAGGCTTCTTCTTCTCAAGCCTCCATCTTCGAATTTCCGAACAAGCTCCGCTCTTCTTCTAGACGCTTCGAGGTCTCTTCACCTCTCTGATACTAGCCATGGACCTCTCCATTGGATTGCTTCCAGAAGCTTCTGTTCTTCTCCCCCTTTGAATCTCAACGAAGGCCCCGCCGCTATCGATTACAGGTATTGCGTTCTGAATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGGGTGCAATTACAGGAGACATAGTGGGAGACCCATTCAAAGACACAGCTGGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGGTGGTCATGGCTCCTATCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

132

Amino Acids

14.31

Weight (kDa)

9.66

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	85 - 126	6.8e-16	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	251
AciI	CCGC	4 cut(s)	20, 84, 204, 207
AcsI	RAATTY	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	9, 187, 316
AluBI	AGCT	3 cut(s)	81, 165, 326
AluI	AGCT	3 cut(s)	81, 165, 326
Alw26I	GTCTC	3 cut(s)	114, 288, 300
Ama87I	CYCGRG	1 cut(s)	34
Aor13HI	TCCGGA	1 cut(s)	251
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	137, 200, 329
AsuHPI	GGTGA	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	137, 329
BccI	CCATC	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	114, 288, 300
BfaI	CTAG	2 cut(s)	95, 129
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	2 cut(s)	137, 329
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	3 cut(s)	137, 200, 329
BmiI	GGNNCC	2 cut(s)	202, 384
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	213
BsaI	GGTCTC	2 cut(s)	114, 300
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
BseAI	TCCGGA	1 cut(s)	251
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	252
BsmAI	GTCTC	3 cut(s)	114, 288, 300
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	2 cut(s)	114, 300
BsoBI	CYCGRG	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	251
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	4 cut(s)	20, 84, 204, 207
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	15
BspDI	ATCGAT	1 cut(s)	213
BspEI	TCCGGA	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	202, 384
BspQI	GCTCTTC	1 cut(s)	93
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	2 cut(s)	114, 300
BsrBI	CCGCTC	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	133
Bst6I	CTCTTC	2 cut(s)	93, 117
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	133
BstMAI	GTCTC	3 cut(s)	114, 288, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 37
Bsu15I	ATCGAT	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	360
Cfr13I	GGNCC	3 cut(s)	137, 200, 329
ClaI	ATCGAT	1 cut(s)	213
CseI	GACGC	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	354, 389
CviAII	CATG	3 cut(s)	134, 341, 379
DdeI	CTNAG	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	93, 117
EarI	CTCTTC	2 cut(s)	93, 117
Eco130I	CCWWGG	1 cut(s)	133
Eco31I	GGTCTC	2 cut(s)	114, 300
Eco47I	GGWCC	2 cut(s)	137, 329
Eco88I	CYCGRG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	3 cut(s)	137, 344, 382
FaiI	YATR	5 cut(s)	135, 276, 299, 342, 380
FatI	CATG	3 cut(s)	133, 340, 378
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	95, 129
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	137, 344, 382
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	4 cut(s)	74, 124, 234, 398
Hpy188III	TCNNGA	4 cut(s)	34, 95, 159, 252
HpyAV	CCTTC	3 cut(s)	21, 191, 342
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 37
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	137, 344, 382
Kpn2I	TCCGGA	1 cut(s)	251
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	86, 388
LpnPI	CCDG	5 cut(s)	172, 205, 265, 276, 312
MaeI	CTAG	2 cut(s)	95, 129
MbiI	CCGCTC	1 cut(s)	86
MboII	GAAGA	7 cut(s)	35, 38, 54, 80, 83, 104, 165
MluCI	AATT	2 cut(s)	67, 285
MnlI	CCTC	6 cut(s)	30, 66, 99, 128, 150, 248
MroI	TCCGGA	1 cut(s)	251
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	2 cut(s)	22, 326
MspI	CCGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	28, 37
NcoI	CCATGG	1 cut(s)	133
NlaIII	CATG	3 cut(s)	137, 344, 382
NlaIV	GGNNCC	2 cut(s)	202, 384
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	202, 384
PspPI	GGNCC	3 cut(s)	137, 200, 329
PvuII	CAGCTG	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	207
Sau96I	GGNCC	3 cut(s)	137, 200, 329
SetI	ASST	9 cut(s)	14, 83, 110, 120, 142, 167, 224, 328, 334
Sfr274I	CTCGAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	2 cut(s)	137, 329
SlaI	CTCGAG	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	34, 50
SmoI	CTYRAG	2 cut(s)	34, 50
Sse9I	AATT	2 cut(s)	67, 285
SsiI	CCGC	4 cut(s)	20, 84, 204, 207
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	2 cut(s)	95, 129
StyI	CCWWGG	1 cut(s)	133
TaqI	TCGA	4 cut(s)	35, 65, 104, 213
TasI	AATT	2 cut(s)	67, 285
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TspDTI	ATGAA	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	137, 329
XapI	RAATTY	1 cut(s)	67
XbaI	TCTAGA	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	2 cut(s)	95, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.