Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Forward (+)

21757459 .. 21759437

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGACAAGGACAAGAGCCGTACCGATCTGCTCTCTGGTGGCCGTAAAAAGGAATATAAGGAGAAGCCAGATTATGCACATTGTGTTGCTATTGTAGCATCTGCATCTTTGAGGGAGATGATAAAACCTGGTGCCATGGCTATTATTTCACCTATAGCAGTTGGTATTGCATTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAGTAACTGTCATAAGGCTGCAATTACAGGAGACATTCTCTGAATTCTCAAAAATGATATCCTCTTGTTTGTTTTGCAGAGTGGGAGACCCATTCAAAGACACAGCTAGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGCTGGTCATGGCTCCTGTCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

127

Amino Acids

14.2

Weight (kDa)

9.35

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	18 - 59	1e-09	Inorganic H+ pyrophosphatase
H_PPase	PF03030	96 - 122	1.8e-06	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccIII	TCCGGA	2 cut(s)	174, 193
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	248
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	230, 285
Aor13HI	TCCGGA	2 cut(s)	174, 193
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	210
BceAI	ACGGC	2 cut(s)	3, 27
BciT130I	CCWGG	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	230, 285
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	133, 369
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	107, 113
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	2 cut(s)	174, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseAI	TCCGGA	2 cut(s)	174, 193
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	175, 194
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	230, 285
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	285
Bsp13I	TCCGGA	2 cut(s)	174, 193
Bsp143I	GATC	1 cut(s)	25
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	1 cut(s)	42
BspEI	TCCGGA	2 cut(s)	174, 193
BspLI	GGNNCC	2 cut(s)	133, 369
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	230, 285
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	345
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	136, 326, 364
CviJI	RGCY	7 cut(s)	18, 42, 67, 140, 223, 311, 368
CviKI_1	RGCY	7 cut(s)	18, 42, 67, 140, 223, 311, 368
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	139, 329, 367
FaiI	YATR	7 cut(s)	57, 75, 137, 155, 218, 327, 365
FatI	CATG	3 cut(s)	135, 325, 363
Fnu4HI	GCNGC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	175, 194
Hin1II	CATG	3 cut(s)	139, 329, 367
HpaII	CCGG	2 cut(s)	175, 194
HphI	GGTGA	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	247, 383
Hpy188III	TCNNGA	2 cut(s)	175, 194
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	77, 104, 170, 226, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	139, 329, 367
Kpn2I	TCCGGA	2 cut(s)	174, 193
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	8 cut(s)	21, 81, 114, 141, 188, 207, 218, 344
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	2 cut(s)	107, 113
MabI	ACCWGGT	1 cut(s)	127
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MluCI	AATT	2 cut(s)	227, 248
MnlI	CCTC	3 cut(s)	105, 190, 277
MroI	TCCGGA	2 cut(s)	174, 193
MseI	TTAA	1 cut(s)	336
MspI	CCGG	2 cut(s)	175, 194
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	139, 329, 367
NlaIV	GGNNCC	2 cut(s)	133, 369
PctI	GAATGC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	133, 369
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	4 cut(s)	130, 154, 313, 319
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	107, 113
SfcI	CTRYAG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	227, 248
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	2 cut(s)	227, 248
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseI	GCWGC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	314
XapI	RAATTY	1 cut(s)	248
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.