pyrophosphate-energized membrane proton pump
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| OPT | PF03169 | 52 - 714 | 5.7e-164 | OPT oligopeptide transporter protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1990 |
| Acc36I | ACCTGC | 1 cut(s) | 1990 |
| AccB1I | GGYRCC | 1 cut(s) | 2247 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1686, 1985 |
| AccBSI | CCGCTC | 2 cut(s) | 241, 1813 |
| AccI | GTMKAC | 2 cut(s) | 845, 930 |
| AccIII | TCCGGA | 1 cut(s) | 800 |
| AciI | CCGC | 6 cut(s) | 229, 239, 423, 1155, 1529, 1811 |
| AclWI | GGATC | 2 cut(s) | 259, 1606 |
| AcoI | YGGCCR | 2 cut(s) | 584, 2238 |
| AcsI | RAATTY | 2 cut(s) | 267, 1910 |
| AfaI | GTAC | 4 cut(s) | 530, 658, 1111, 2045 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 283, 650, 1382, 1686, 1985 |
| AflIII | ACRYGT | 4 cut(s) | 576, 1168, 1203, 1754 |
| AjiI | CACGTC | 2 cut(s) | 168, 1306 |
| AjnI | CCWGG | 5 cut(s) | 31, 883, 1037, 1507, 2227 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 887, 919 |
| Alw26I | GTCTC | 6 cut(s) | 30, 262, 610, 1154, 1321, 1729 |
| AlwI | GGATC | 2 cut(s) | 259, 1606 |
| Aor13HI | TCCGGA | 1 cut(s) | 800 |
| ApeKI | GCWGC | 5 cut(s) | 299, 693, 938, 1964, 2093 |
| ApoI | RAATTY | 2 cut(s) | 267, 1910 |
| AseI | ATTAAT | 3 cut(s) | 1068, 1440, 1470 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1058, 1856 |
| AspLEI | GCGC | 2 cut(s) | 194, 1882 |
| AspS9I | GGNCC | 7 cut(s) | 328, 365, 1808, 1988, 2165, 2179, 2209 |
| AsuC2I | CCSGG | 3 cut(s) | 363, 1761, 1844 |
| AsuHPI | GGTGA | 4 cut(s) | 121, 388, 1144, 1411 |
| AvaII | GGWCC | 2 cut(s) | 328, 1988 |
| BaeGI | GKGCMC | 1 cut(s) | 2252 |
| BalI | TGGCCA | 1 cut(s) | 2240 |
| BanI | GGYRCC | 1 cut(s) | 2247 |
| BbsI | GAAGAC | 1 cut(s) | 1765 |
| BbvI | GCAGC | 5 cut(s) | 286, 705, 925, 1976, 2080 |
| BceAI | ACGGC | 2 cut(s) | 571, 639 |
| BciT130I | CCWGG | 5 cut(s) | 33, 885, 1039, 1509, 2229 |
| BclI | TGATCA | 2 cut(s) | 444, 2194 |
| BcnI | CCSGG | 3 cut(s) | 363, 1761, 1844 |
| BcoDI | GTCTC | 6 cut(s) | 30, 262, 610, 1154, 1321, 1729 |
| BfaI | CTAG | 3 cut(s) | 1221, 1665, 2070 |
| BfmI | CTRYAG | 1 cut(s) | 1090 |
| BfuAI | ACCTGC | 1 cut(s) | 1990 |
| BisI | GCNGC | 6 cut(s) | 300, 694, 939, 1530, 1965, 2094 |
| BlsI | GCNGC | 6 cut(s) | 301, 695, 940, 1531, 1966, 2095 |
| Bme1390I | CCNGG | 8 cut(s) | 33, 363, 885, 1039, 1509, 1761, 1844, 2229 |
| Bme18I | GGWCC | 2 cut(s) | 328, 1988 |
| BmgBI | CACGTC | 2 cut(s) | 168, 1306 |
| BmgT120I | GGNCC | 7 cut(s) | 328, 365, 1808, 1988, 2165, 2179, 2209 |
| BmiI | GGNNCC | 7 cut(s) | 329, 330, 366, 799, 983, 2180, 2249 |
| BmrFI | CCNGG | 8 cut(s) | 33, 363, 885, 1039, 1509, 1761, 1844, 2229 |
| BmrI | ACTGGG | 2 cut(s) | 1473, 2246 |
| BmsI | GCATC | 7 cut(s) | 61, 490, 497, 510, 1000, 1845, 2092 |
| BmuI | ACTGGG | 2 cut(s) | 1473, 2246 |
| BpiI | GAAGAC | 1 cut(s) | 1765 |
| BpmI | CTGGAG | 2 cut(s) | 15, 435 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1968 |
| BpuEI | CTTGAG | 1 cut(s) | 1221 |
| BpuMI | CCSGG | 3 cut(s) | 363, 1761, 1844 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1490 |
| BsaI | GGTCTC | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 5 cut(s) | 362, 808, 1376, 1748, 1867 |
| BsaWI | WCCGGW | 1 cut(s) | 800 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 283, 650, 1382, 1686, 1985 |
| Bse1I | ACTGG | 7 cut(s) | 1146, 1468, 1639, 1859, 1889, 2177, 2252 |
| Bse3DI | GCAATG | 5 cut(s) | 620, 933, 945, 1404, 2197 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1490 |
| BseAI | TCCGGA | 1 cut(s) | 800 |
| BseBI | CCWGG | 5 cut(s) | 33, 885, 1039, 1509, 2229 |
| BseDI | CCNNGG | 5 cut(s) | 362, 808, 1376, 1748, 1867 |
| BseGI | GGATG | 7 cut(s) | 481, 539, 1248, 1308, 1744, 2082, 2107 |
| BseJI | GATNNNNATC | 1 cut(s) | 1490 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 283, 650, 1382, 1686, 1985 |
| BseMI | GCAATG | 5 cut(s) | 620, 933, 945, 1404, 2197 |
| BseMII | CTCAG | 6 cut(s) | 273, 1120, 1127, 1828, 1982, 2103 |
| BseNI | ACTGG | 7 cut(s) | 1146, 1468, 1639, 1859, 1889, 2177, 2252 |
| BseRI | GAGGAG | 1 cut(s) | 1856 |
| BseSI | GKGCMC | 1 cut(s) | 2252 |
| BseXI | GCAGC | 5 cut(s) | 286, 705, 925, 1976, 2080 |
| BsgI | GTGCAG | 1 cut(s) | 2208 |
| BshNI | GGYRCC | 1 cut(s) | 2247 |
| BsiSI | CCGG | 5 cut(s) | 362, 801, 1736, 1761, 1844 |
| BslFI | GGGAC | 3 cut(s) | 314, 1271, 1743 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 283, 650, 1382, 1686, 1985 |
| BsmAI | GTCTC | 6 cut(s) | 30, 262, 610, 1154, 1321, 1729 |
| BsmFI | GGGAC | 3 cut(s) | 314, 1271, 1743 |
| BsmI | GAATGC | 1 cut(s) | 1531 |
| Bso31I | GGTCTC | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2252 |
| Bsp13I | TCCGGA | 1 cut(s) | 800 |
| Bsp1407I | TGTACA | 1 cut(s) | 2043 |
| Bsp143I | GATC | 5 cut(s) | 126, 251, 444, 1611, 2194 |
| Bsp19I | CCATGG | 3 cut(s) | 808, 1376, 1748 |
| BspACI | CCGC | 6 cut(s) | 229, 239, 423, 1155, 1529, 1811 |
| BspCNI | CTCAG | 6 cut(s) | 272, 1119, 1128, 1827, 1981, 2102 |
| BspEI | TCCGGA | 1 cut(s) | 800 |
| BspLI | GGNNCC | 7 cut(s) | 329, 330, 366, 799, 983, 2180, 2249 |
| BspMI | ACCTGC | 1 cut(s) | 1990 |
| BspPI | GGATC | 2 cut(s) | 259, 1606 |
| BspT107I | GGYRCC | 1 cut(s) | 2247 |
| BspTNI | GGTCTC | 1 cut(s) | 30 |
| BsrBI | CCGCTC | 2 cut(s) | 241, 1813 |
| BsrDI | GCAATG | 5 cut(s) | 620, 933, 945, 1404, 2197 |
| BsrGI | TGTACA | 1 cut(s) | 2043 |
| BsrI | ACTGG | 7 cut(s) | 1146, 1468, 1639, 1859, 1889, 2177, 2252 |
| BssECI | CCNNGG | 5 cut(s) | 362, 808, 1376, 1748, 1867 |
| BssMI | GATC | 5 cut(s) | 126, 251, 444, 1611, 2194 |
| BssT1I | CCWWGG | 3 cut(s) | 808, 1376, 1748 |
| Bst2UI | CCWGG | 5 cut(s) | 33, 885, 1039, 1509, 2229 |
| Bst4CI | ACNGT | 4 cut(s) | 121, 850, 1413, 1654 |
| BstAUI | TGTACA | 1 cut(s) | 2043 |
| BstC8I | GCNNGC | 5 cut(s) | 409, 421, 541, 1514, 1811 |
| BstDEI | CTNAG | 8 cut(s) | 45, 259, 862, 1106, 1136, 1814, 1968, 2089 |
| BstDSI | CCRYGG | 3 cut(s) | 808, 1376, 1748 |
| BstF5I | GGATG | 7 cut(s) | 481, 539, 1248, 1308, 1744, 2082, 2107 |
| BstHHI | GCGC | 2 cut(s) | 194, 1882 |
| BstKTI | GATC | 5 cut(s) | 129, 254, 447, 1614, 2197 |
| BstMAI | GTCTC | 6 cut(s) | 30, 262, 610, 1154, 1321, 1729 |
| BstMBI | GATC | 5 cut(s) | 126, 251, 444, 1611, 2194 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 200, 947, 1529, 1554, 2102, 2111 |
| BstNI | CCWGG | 5 cut(s) | 33, 885, 1039, 1509, 2229 |
| BstNSI | RCATGY | 7 cut(s) | 389, 580, 1172, 1207, 1561, 1758, 1948 |
| BstSCI | CCNGG | 8 cut(s) | 31, 361, 883, 1037, 1507, 1759, 1842, 2227 |
| BstSFI | CTRYAG | 1 cut(s) | 1090 |
| BstSLI | GKGCMC | 1 cut(s) | 2252 |
| BstV1I | GCAGC | 5 cut(s) | 286, 705, 925, 1976, 2080 |
| BstV2I | GAAGAC | 1 cut(s) | 1765 |
| BstX2I | RGATCY | 1 cut(s) | 1611 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 794, 815, 1646, 2175 |
| BstYI | RGATCY | 1 cut(s) | 1611 |
| BtgI | CCRYGG | 3 cut(s) | 808, 1376, 1748 |
| BtgZI | GCGATG | 3 cut(s) | 1028, 1734, 1779 |
| BtrI | CACGTC | 2 cut(s) | 168, 1306 |
| BtsCI | GGATG | 7 cut(s) | 481, 539, 1248, 1308, 1744, 2082, 2107 |
| BtsIMutI | CAGTG | 2 cut(s) | 117, 1409 |
| BveI | ACCTGC | 1 cut(s) | 1990 |
| Cac8I | GCNNGC | 5 cut(s) | 409, 421, 541, 1514, 1811 |
| CfoI | GCGC | 2 cut(s) | 194, 1882 |
| Cfr13I | GGNCC | 7 cut(s) | 328, 365, 1808, 1988, 2165, 2179, 2209 |
| Csp6I | GTAC | 4 cut(s) | 529, 657, 1110, 2044 |
| CviQI | GTAC | 4 cut(s) | 529, 657, 1110, 2044 |
| DdeI | CTNAG | 8 cut(s) | 45, 259, 862, 1106, 1136, 1814, 1968, 2089 |
| DpnI | GATC | 5 cut(s) | 128, 253, 446, 1613, 2196 |
| DpnII | GATC | 5 cut(s) | 126, 251, 444, 1611, 2194 |
| EaeI | YGGCCR | 2 cut(s) | 584, 2238 |
| Eco130I | CCWWGG | 3 cut(s) | 808, 1376, 1748 |
| Eco31I | GGTCTC | 1 cut(s) | 30 |
| Eco47I | GGWCC | 2 cut(s) | 328, 1988 |
| EcoO109I | RGGNCCY | 3 cut(s) | 328, 365, 2179 |
| EcoRII | CCWGG | 5 cut(s) | 31, 883, 1037, 1507, 2227 |
| EcoT14I | CCWWGG | 3 cut(s) | 808, 1376, 1748 |
| EcoT22I | ATGCAT | 1 cut(s) | 967 |
| ErhI | CCWWGG | 3 cut(s) | 808, 1376, 1748 |
| FaqI | GGGAC | 3 cut(s) | 314, 1271, 1743 |
| FauI | CCCGC | 2 cut(s) | 246, 1818 |
| FauNDI | CATATG | 5 cut(s) | 441, 689, 967, 1793, 2008 |
| FbaI | TGATCA | 2 cut(s) | 444, 2194 |
| FblI | GTMKAC | 2 cut(s) | 845, 930 |
| Fnu4HI | GCNGC | 6 cut(s) | 300, 694, 939, 1530, 1965, 2094 |
| FokI | GGATG | 7 cut(s) | 468, 546, 1235, 1295, 1751, 2069, 2114 |
| Fsp4HI | GCNGC | 6 cut(s) | 300, 694, 939, 1530, 1965, 2094 |
| FspBI | CTAG | 3 cut(s) | 1221, 1665, 2070 |
| GlaI | GCGC | 2 cut(s) | 193, 1881 |
| GluI | GCNGC | 6 cut(s) | 300, 694, 939, 1530, 1965, 2094 |
| GsuI | CTGGAG | 2 cut(s) | 15, 435 |
| HapII | CCGG | 5 cut(s) | 362, 801, 1736, 1761, 1844 |
| HhaI | GCGC | 2 cut(s) | 194, 1882 |
| Hin6I | GCGC | 2 cut(s) | 192, 1880 |
| HinP1I | GCGC | 2 cut(s) | 192, 1880 |
| HincII | GTYRAC | 3 cut(s) | 16, 211, 565 |
| HindII | GTYRAC | 3 cut(s) | 16, 211, 565 |
| HinfI | GANTC | 6 cut(s) | 358, 475, 566, 804, 834, 1042 |
| HpaII | CCGG | 5 cut(s) | 362, 801, 1736, 1761, 1844 |
| HphI | GGTGA | 4 cut(s) | 121, 388, 1144, 1411 |
| Hpy166II | GTNNAC | 8 cut(s) | 16, 211, 565, 846, 931, 1874, 1996, 2044 |
| Hpy188I | TCNGA | 9 cut(s) | 126, 165, 378, 551, 924, 978, 1053, 1078, 1817 |
| Hpy188III | TCNNGA | 3 cut(s) | 414, 801, 1537 |
| Hpy8I | GTNNAC | 8 cut(s) | 16, 211, 565, 846, 931, 1874, 1996, 2044 |
| HpyAV | CCTTC | 6 cut(s) | 150, 505, 1123, 1343, 1543, 2125 |
| HpyCH4III | ACNGT | 4 cut(s) | 121, 850, 1413, 1654 |
| HpyCH4IV | ACGT | 2 cut(s) | 167, 1305 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 200, 947, 1529, 1554, 2102, 2111 |
| HpyF3I | CTNAG | 8 cut(s) | 45, 259, 862, 1106, 1136, 1814, 1968, 2089 |
| HpySE526I | ACGT | 2 cut(s) | 167, 1305 |
| HspAI | GCGC | 2 cut(s) | 192, 1880 |
| KflI | GGGWCCC | 1 cut(s) | 328 |
| Kpn2I | TCCGGA | 1 cut(s) | 800 |
| Ksp22I | TGATCA | 2 cut(s) | 444, 2194 |
| Kzo9I | GATC | 5 cut(s) | 126, 251, 444, 1611, 2194 |
| LmnI | GCTCC | 4 cut(s) | 416, 1371, 1961, 2012 |
| Lsp1109I | GCAGC | 5 cut(s) | 286, 705, 925, 1976, 2080 |
| LweI | GCATC | 7 cut(s) | 61, 490, 497, 510, 1000, 1845, 2092 |
| MaeI | CTAG | 3 cut(s) | 1221, 1665, 2070 |
| MaeII | ACGT | 2 cut(s) | 167, 1305 |
| MaeIII | GTNAC | 2 cut(s) | 1560, 1598 |
| MalI | GATC | 5 cut(s) | 128, 253, 446, 1613, 2196 |
| MbiI | CCGCTC | 2 cut(s) | 241, 1813 |
| MboI | GATC | 5 cut(s) | 126, 251, 444, 1611, 2194 |
| MflI | RGATCY | 1 cut(s) | 1611 |
| MhlI | GDGCHC | 1 cut(s) | 2252 |
| MlsI | TGGCCA | 1 cut(s) | 2240 |
| MluNI | TGGCCA | 1 cut(s) | 2240 |
| MlyI | GAGTC | 3 cut(s) | 560, 813, 828 |
| MmeI | TCCRAC | 1 cut(s) | 1393 |
| Mox20I | TGGCCA | 1 cut(s) | 2240 |
| Mph1103I | ATGCAT | 1 cut(s) | 967 |
| MroI | TCCGGA | 1 cut(s) | 800 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1058, 1856 |
| MscI | TGGCCA | 1 cut(s) | 2240 |
| MseI | TTAA | 7 cut(s) | 900, 1068, 1242, 1391, 1440, 1470, 1932 |
| MslI | CAYNNNNRTG | 5 cut(s) | 518, 1070, 1687, 1753, 1943 |
| Msp20I | TGGCCA | 1 cut(s) | 2240 |
| MspA1I | CMGCKG | 1 cut(s) | 2093 |
| MspI | CCGG | 5 cut(s) | 362, 801, 1736, 1761, 1844 |
| MspR9I | CCNGG | 8 cut(s) | 33, 363, 885, 1039, 1509, 1761, 1844, 2229 |
| Mva1269I | GAATGC | 1 cut(s) | 1531 |
| MvaI | CCWGG | 5 cut(s) | 33, 885, 1039, 1509, 2229 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 200, 947, 1529, 1554, 2102, 2111 |
| NciI | CCSGG | 3 cut(s) | 363, 1761, 1844 |
| NcoI | CCATGG | 3 cut(s) | 808, 1376, 1748 |
| NdeI | CATATG | 5 cut(s) | 441, 689, 967, 1793, 2008 |
| NdeII | GATC | 5 cut(s) | 126, 251, 444, 1611, 2194 |
| NlaIV | GGNNCC | 7 cut(s) | 329, 330, 366, 799, 983, 2180, 2249 |
| NmuCI | GTSAC | 2 cut(s) | 1560, 1598 |
| NsiI | ATGCAT | 1 cut(s) | 967 |
| NspI | RCATGY | 7 cut(s) | 389, 580, 1172, 1207, 1561, 1758, 1948 |
| PaqCI | CACCTGC | 1 cut(s) | 1990 |
| PciI | ACATGT | 4 cut(s) | 576, 1168, 1203, 1754 |
| PctI | GAATGC | 1 cut(s) | 1531 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1058, 1856 |
| PfeI | GAWTC | 3 cut(s) | 358, 475, 1042 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1686, 1985 |
| PfoI | TCCNGGA | 2 cut(s) | 31, 1037 |
| PkrI | GCNGC | 6 cut(s) | 301, 695, 940, 1531, 1966, 2095 |
| PleI | GAGTC | 3 cut(s) | 560, 812, 828 |
| PpsI | GAGTC | 3 cut(s) | 560, 812, 828 |
| PpuMI | RGGWCCY | 1 cut(s) | 328 |
| PscI | ACATGT | 4 cut(s) | 576, 1168, 1203, 1754 |
| PshBI | ATTAAT | 3 cut(s) | 1068, 1440, 1470 |
| Psp5II | RGGWCCY | 1 cut(s) | 328 |
| Psp6I | CCWGG | 5 cut(s) | 31, 883, 1037, 1507, 2227 |
| PspGI | CCWGG | 5 cut(s) | 31, 883, 1037, 1507, 2227 |
| PspN4I | GGNNCC | 7 cut(s) | 329, 330, 366, 799, 983, 2180, 2249 |
| PspPI | GGNCC | 7 cut(s) | 328, 365, 1808, 1988, 2165, 2179, 2209 |
| PspPPI | RGGWCCY | 1 cut(s) | 328 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2036, 2068 |
| PsuI | RGATCY | 1 cut(s) | 1611 |
| PvuII | CAGCTG | 1 cut(s) | 2093 |
| RsaI | GTAC | 4 cut(s) | 530, 658, 1111, 2045 |
| RsaNI | GTAC | 4 cut(s) | 529, 657, 1110, 2044 |
| RseI | CAYNNNNRTG | 5 cut(s) | 518, 1070, 1687, 1753, 1943 |
| SaqAI | TTAA | 7 cut(s) | 900, 1068, 1242, 1391, 1440, 1470, 1932 |
| SatI | GCNGC | 6 cut(s) | 300, 694, 939, 1530, 1965, 2094 |
| Sau3AI | GATC | 5 cut(s) | 126, 251, 444, 1611, 2194 |
| Sau96I | GGNCC | 7 cut(s) | 328, 365, 1808, 1988, 2165, 2179, 2209 |
| SchI | GAGTC | 3 cut(s) | 560, 813, 828 |
| ScrFI | CCNGG | 8 cut(s) | 33, 363, 885, 1039, 1509, 1761, 1844, 2229 |
| SduI | GDGCHC | 1 cut(s) | 2252 |
| SfaNI | GCATC | 7 cut(s) | 61, 490, 497, 510, 1000, 1845, 2092 |
| SfcI | CTRYAG | 1 cut(s) | 1090 |
| SinI | GGWCC | 2 cut(s) | 328, 1988 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 518, 1070, 1687, 1753, 1943 |
| SmlI | CTYRAG | 1 cut(s) | 1236 |
| SmoI | CTYRAG | 1 cut(s) | 1236 |
| SsiI | CCGC | 6 cut(s) | 229, 239, 423, 1155, 1529, 1811 |
| SspMI | CTAG | 3 cut(s) | 1221, 1665, 2070 |
| StyD4I | CCNGG | 8 cut(s) | 31, 361, 883, 1037, 1507, 1759, 1842, 2227 |
| StyI | CCWWGG | 3 cut(s) | 808, 1376, 1748 |
| TaaI | ACNGT | 4 cut(s) | 121, 850, 1413, 1654 |
| TaiI | ACGT | 2 cut(s) | 170, 1308 |
| TaqI | TCGA | 3 cut(s) | 353, 837, 1062 |
| TatI | WGTACW | 1 cut(s) | 2043 |
| TauI | GCSGC | 1 cut(s) | 1532 |
| TfiI | GAWTC | 3 cut(s) | 358, 475, 1042 |
| Tru1I | TTAA | 7 cut(s) | 900, 1068, 1242, 1391, 1440, 1470, 1932 |
| Tru9I | TTAA | 7 cut(s) | 900, 1068, 1242, 1391, 1440, 1470, 1932 |
| TscAI | CASTG | 2 cut(s) | 124, 1416 |
| TseFI | GTSAC | 2 cut(s) | 1560, 1598 |
| TseI | GCWGC | 5 cut(s) | 299, 693, 938, 1964, 2093 |
| Tsp45I | GTSAC | 2 cut(s) | 1560, 1598 |
| TspDTI | ATGAA | 7 cut(s) | 96, 371, 642, 676, 1280, 1293, 1622 |
| TspGWI | ACGGA | 1 cut(s) | 546 |
| TspRI | CASTG | 2 cut(s) | 124, 1416 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1686, 1985 |
| VpaK11BI | GGWCC | 2 cut(s) | 328, 1988 |
| VspI | ATTAAT | 3 cut(s) | 1068, 1440, 1470 |
| XapI | RAATTY | 2 cut(s) | 267, 1910 |
| XceI | RCATGY | 7 cut(s) | 389, 580, 1172, 1207, 1561, 1758, 1948 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1923 |
| XmiI | GTMKAC | 2 cut(s) | 845, 930 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1058, 1856 |
| XspI | CTAG | 3 cut(s) | 1221, 1665, 2070 |
| Zsp2I | ATGCAT | 1 cut(s) | 967 |