Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001174

Physical Location & Seq

Genomic Coordinates Forward (+)

32449049 .. 32451843

Gene Structure 2795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG305600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGACAAGGACAAAAGCCGTACCGATCTGCTCGCTGCTGGCCGTAAAAAGGATGCAACCATAGAGCAACTGCTGCCTATTTTCCTTTCTCTTCTCAAAGATGAGTTTCCAGATGTCCGGCTGAACATTATTAGCAAGCTTGATCAAGTCAACCAGGGAATTGGAATTGATCTGCTGTCCCAGTCTCTACTGCCAGCAATTGTGGAACTGGCAGAGGATAGACATTGGAGGGTTCGGCTTGCGATAATAGAATATATCCCTTTATTGGCAAGTCAGTTGGGTGTGGGGTTTTTCGATGATAAGCTTGGTTCTCTTTGCATGCAGTGGTTAAATGATAAGGTTTACTCAATACGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATTTGGTCCTGATTGGGCCATGCAGCATATAGTCCCACAGGTTTTGGAAATGATTAACAACCCTCACTATTTGTATCGGATGACCATTCTACATGCAATTTCCCTACTTGCCCCTGTTATGGGATCAGAAATTACTTGTTCCAAACTTCTACCGGTGGTTATCACTGCATCAAAAGATAGGTATTGCGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGGCTGCAATTACAGGAGACATAGTGGGAGACCCATTCAAAGACACAGCTAGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGTTGGTCATGGCTCCTGTCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

249

Amino Acids

27.76

Weight (kDa)

6.3

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	26 - 122	6.5e-06	HEAT repeats
H_PPase	PF03030	202 - 244	2e-15	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320
malus_domestica	MD01G1132700.v1.1 MD09G1265800.v1.1 MD10G1108800.v1.1
pyrus_communis	pycom13g03920
rosa_chinensis	RchiOBHm_Chr1g0316561 RchiOBHm_Chr1g0328271 RchiOBHm_Chr2g0165621 RchiOBHm_Chr3g0479971 RchiOBHm_Chr4g0401841 RchiOBHm_Chr4g0434251 RchiOBHm_Chr5g0039511 RchiOBHm_Chr7g0200641 RchiOBHm_Chr7g0238001
rosa_multiflora	Rmu_sc0002482.1_g000009 Rmu_sc0007727.1_g000033 Rmu_sc0021522.1_g000001 Rmu_sc0037639.1_g000001 Rmu_sc0037640.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432830 Rroxscaffold_2G00109080 Rroxscaffold_2G00152900 Rroxscaffold_4G00325550 Rroxscaffold_5G00362430 Rroxscaffold_6G00388010 Rroxscaffold_6G00404080 Rroxscaffold_6G00407250
rosa_rugosa	Rorug03G0200700 Rorug03G0200700 Rorug03G0200700 Rorug03G0200800 Rorug03G0200900 Rorug05G0301400 Rorug05G0555200 Rorug07G0290800
rosa_samantha	Rh1AG021800 Rh2CG104200 Rh2CG537000 Rh3AG230800 Rh3CG247100 Rh3DG305600 Rh3DG305700 Rh4AG105800 Rh4AG107100 Rh4CG114500 Rh5BG443800 Rh5CG320500 Rh5CG466000 Rh5CG551100 Rh7BG280600 Rh7BG449700 Rh7CG072500 Rh7DG284400 Rh7DG387200 Rh7DG423200
rosa_wichuraiana	Rw4G008580 Rw5G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	583, 602
AclWI	GGATC	1 cut(s)	523
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	392
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	4 cut(s)	49, 265, 511, 512
AgeI	ACCGGT	1 cut(s)	544
AgsI	TTSAA	1 cut(s)	667
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	139, 304, 362, 677
AluI	AGCT	4 cut(s)	139, 304, 362, 677
Alw26I	GTCTC	3 cut(s)	189, 639, 651
AlwI	GGATC	1 cut(s)	523
Aor13HI	TCCGGA	2 cut(s)	583, 602
AoxI	GGCC	2 cut(s)	40, 408
ApeKI	GCWGC	6 cut(s)	35, 73, 359, 362, 415, 632
ApoI	RAATTY	1 cut(s)	392
AsiGI	ACCGGT	1 cut(s)	544
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	398, 408
AvaII	GGWCC	1 cut(s)	398
BbvI	GCAGC	6 cut(s)	22, 60, 349, 371, 427, 619
BceAI	ACGGC	2 cut(s)	3, 27
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	3 cut(s)	189, 639, 651
BfaI	CTAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	6 cut(s)	36, 74, 360, 363, 416, 633
BlsI	GCNGC	6 cut(s)	37, 75, 361, 364, 417, 634
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	398, 408
BmiI	GGNNCC	1 cut(s)	735
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	3 cut(s)	43, 346, 569
BmuI	ACTGGG	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	3 cut(s)	544, 583, 602
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 265, 511, 512
Bse118I	RCCGGY	1 cut(s)	544
Bse1I	ACTGG	2 cut(s)	181, 213
BseAI	TCCGGA	2 cut(s)	583, 602
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	58, 477
BseLI	CCNNNNNNNGG	4 cut(s)	49, 265, 511, 512
BseNI	ACTGG	2 cut(s)	181, 213
BseXI	GCAGC	6 cut(s)	22, 60, 349, 371, 427, 619
BshFI	GGCC	2 cut(s)	42, 410
BshTI	ACCGGT	1 cut(s)	544
BsiSI	CCGG	4 cut(s)	118, 545, 584, 603
BslFI	GGGAC	2 cut(s)	163, 410
BslI	CCNNNNNNNGG	4 cut(s)	49, 265, 511, 512
BsmAI	GTCTC	3 cut(s)	189, 639, 651
BsmFI	GGGAC	2 cut(s)	163, 410
BsnI	GGCC	2 cut(s)	42, 410
Bso31I	GGTCTC	1 cut(s)	651
Bsp13I	TCCGGA	2 cut(s)	583, 602
Bsp143I	GATC	4 cut(s)	25, 142, 169, 515
BspANI	GGCC	2 cut(s)	42, 410
BspEI	TCCGGA	2 cut(s)	583, 602
BspLI	GGNNCC	1 cut(s)	735
BspPI	GGATC	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	651
BsrFI	RCCGGY	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	181, 213
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	4 cut(s)	25, 142, 169, 515
Bst2UI	CCWGG	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	7 cut(s)	33, 40, 137, 195, 240, 320, 711
BstF5I	GGATG	2 cut(s)	58, 477
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	4 cut(s)	28, 145, 172, 518
BstMAI	GTCTC	3 cut(s)	189, 639, 651
BstMBI	GATC	4 cut(s)	25, 142, 169, 515
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	2 cut(s)	322, 488
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	6 cut(s)	22, 60, 349, 371, 427, 619
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	42, 410
BtsCI	GGATG	2 cut(s)	58, 477
BtsI	GCAGTG	2 cut(s)	329, 555
BtsIMutI	CAGTG	2 cut(s)	329, 555
Cac8I	GCNNGC	7 cut(s)	33, 40, 137, 195, 240, 320, 711
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	398, 408
Csp6I	GTAC	1 cut(s)	21
CspAI	ACCGGT	1 cut(s)	544
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	5 cut(s)	319, 412, 485, 692, 730
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	4 cut(s)	27, 144, 171, 517
DpnII	GATC	4 cut(s)	25, 142, 169, 515
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	5 cut(s)	322, 415, 488, 695, 733
FaqI	GGGAC	2 cut(s)	163, 410
FatI	CATG	5 cut(s)	318, 411, 484, 691, 729
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	6 cut(s)	36, 74, 360, 363, 416, 633
FokI	GGATG	2 cut(s)	65, 484
Fsp4HI	GCNGC	6 cut(s)	36, 74, 360, 363, 416, 633
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	6 cut(s)	36, 74, 360, 363, 416, 633
HaeII	RGCGCY	1 cut(s)	382
HaeIII	GGCC	2 cut(s)	42, 410
HapII	CCGG	4 cut(s)	118, 545, 584, 603
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	5 cut(s)	322, 415, 488, 695, 733
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	2 cut(s)	137, 302
HpaII	CCGG	4 cut(s)	118, 545, 584, 603
Hpy166II	GTNNAC	2 cut(s)	151, 343
Hpy188I	TCNGA	2 cut(s)	471, 520
Hpy188III	TCNNGA	4 cut(s)	110, 401, 584, 603
Hpy8I	GTNNAC	2 cut(s)	151, 343
HpyAV	CCTTC	1 cut(s)	693
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	9 cut(s)	56, 318, 322, 359, 386, 415, 488, 560, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	5 cut(s)	322, 415, 488, 695, 733
HspAI	GCGC	1 cut(s)	379
Kpn2I	TCCGGA	2 cut(s)	583, 602
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	25, 142, 169, 515
LmnI	GCTCC	1 cut(s)	739
Lsp1109I	GCAGC	6 cut(s)	22, 60, 349, 371, 427, 619
LweI	GCATC	3 cut(s)	43, 346, 569
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	1 cut(s)	352
MalI	GATC	4 cut(s)	27, 144, 171, 517
MboI	GATC	4 cut(s)	25, 142, 169, 515
MboII	GAAGA	2 cut(s)	83, 401
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	7 cut(s)	159, 165, 198, 392, 489, 522, 636
MnlI	CCTC	4 cut(s)	208, 222, 465, 599
MroI	TCCGGA	2 cut(s)	583, 602
MseI	TTAA	3 cut(s)	329, 447, 702
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	4 cut(s)	118, 545, 584, 603
MspR9I	CCNGG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	4 cut(s)	25, 142, 169, 515
NlaIII	CATG	5 cut(s)	322, 415, 488, 695, 733
NlaIV	GGNNCC	1 cut(s)	735
NspI	RCATGY	2 cut(s)	322, 488
PaeI	GCATGC	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	544
PkrI	GCNGC	6 cut(s)	37, 75, 361, 364, 417, 634
Ppu21I	YACGTR	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	735
PspPI	GGNCC	2 cut(s)	398, 408
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	329, 447, 702
SatI	GCNGC	6 cut(s)	36, 74, 360, 363, 416, 633
Sau3AI	GATC	4 cut(s)	25, 142, 169, 515
Sau96I	GGNCC	2 cut(s)	398, 408
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	9 cut(s)	141, 306, 342, 355, 364, 435, 575, 679, 685
SfaNI	GCATC	3 cut(s)	43, 346, 569
SinI	GGWCC	1 cut(s)	398
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	7 cut(s)	159, 165, 198, 392, 489, 522, 636
SspMI	CTAG	1 cut(s)	678
StyD4I	CCNGG	1 cut(s)	153
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	294
TasI	AATT	7 cut(s)	159, 165, 198, 392, 489, 522, 636
Tru1I	TTAA	3 cut(s)	329, 447, 702
Tru9I	TTAA	3 cut(s)	329, 447, 702
TscAI	CASTG	2 cut(s)	329, 562
TseI	GCWGC	6 cut(s)	35, 73, 359, 362, 415, 632
TspDTI	ATGAA	1 cut(s)	680
TspRI	CASTG	2 cut(s)	329, 562
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	2 cut(s)	322, 488
XspI	CTAG	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.