Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000927

Physical Location & Seq

Genomic Coordinates Forward (+)

1773369 .. 1775920

Gene Structure 2552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCTTGAAAGAAAAATGGCTCAAGGTACCGACAATGAGGCAGAACTTGTTGATGAAAGCATTCAACATGCCAAGGAAGCCATAACTCTTGATGTCAAGGATGGGAATTCATGGTACAATCTTGGAAATGCATGTCTTACAAGTTTCTTTGTGACTGGAGCTTGGGACCATTCCAAACTTCTGCAATCTTTGAAGGCATACCAAAATGCTGAAAAGGATGAAAGAATGCAGTCCAATCCAGACCTATATTTTAACTGTGCCACTGTAAACAGATATCTGGAAAACTATGAAAGGGCCCTTTCTGGATTTGAAGCTGCTGCTTTAAAGGATCCTGGTCTCAATGCTACAGAGGAGGTTCAAAAGATTGTTAGCCTTCTTGACAAGCTGGATAATCTGTTAAGGGGGCATGCTAGATCTAAACGACTTATGTCATTAGCATCATCTCTGGCTGCTGTAAACTTGAACTCCTCATATCGAAGAGCTACTGTAGATATTCTATCAGAGGGTCTGAACAAATCAGTAGCACTAGTGGGAAAAGTGCTATTCTTTATTAAGCATGACAACGTTGCTCCACTGTACTACTTGGCATGCGATTCAAATCAAATATGCTTTGTTGTGTCAGTTTATGGCATTCAATATGATTCGCAAAGAAGGATCGATCAGCTAACAATACTGGAACCTTTTCATCGGCGTTTCAAGTTTTCTTGGAAAGAAAAGTTCTACGAGTTCAAATCATTTCGTGTGGATTTCATAGAACAGTTGCTTGTGAACGGAAAGGCCCTTACTCCTCACCAAGCTGTCCGTACCTCAATTTATGCACAGCACAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TTC5_OB

Protein Analysis

278

Amino Acids

31.59

Weight (kDa)

7.67

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TTC5_OB	PF16669	158 - 269	5.8e-34	Tetratricopeptide repeat protein 5 OB fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26200 FvH4_4g26200 FvH4_4g26200
malus_domestica	MD16G1031500.v1.1
prunus_persica	Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1 Prupe.1G321400_v2.0.a1
pyrus_communis	pycom16g02770
rosa_chinensis	RchiOBHm_Chr2g0138811 RchiOBHm_Chr3g0493761 RchiOBHm_Chr4g0433781 RchiOBHm_Chr7g0235151
rosa_laevigata	RLG00000006731 RLG00000010288 RLG00000022530 RLG00000033694 RLG00000034398
rosa_multiflora	Rmu_sc0000580.1_g000036 Rmu_sc0001535.1_g000003 Rmu_sc0002212.1_g000008 Rmu_sc0004245.1_g000010 Rmu_sc0033149.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006660 Rroxscaffold_2G00147750 Rroxscaffold_3G00241970 Rroxscaffold_5G00375210 Rroxscaffold_6G00389040 Rroxscaffold_6G00389720
rosa_rugosa	Rorug01G0124100 Rorug04G0271300 Rorug04G0271400 Rorug04G0271500 Rorug05G0199400 Rorug06G0215900
rosa_samantha	Rh1BG293100 Rh1CG238700 Rh1CG309600 Rh1DG324600 Rh2AG337400 Rh2BG392100 Rh2BG454700 Rh2BG454800 Rh2CG324700 Rh2DG464800 Rh3AG312700 Rh3DG293500 Rh4AG049900 Rh4AG326100 Rh4BG333700 Rh4CG349200 Rh4DG028200 Rh4DG330700 Rh5AG399500 Rh5AG400700 Rh5CG248100 Rh5DG415200 Rh6AG088100 Rh6BG202700 Rh6CG077100 Rh7CG463900
rosa_wichuraiana	Rw4G028230 Rw4G028280 Rw7G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	3 cut(s)	323, 336, 662
AcsI	RAATTY	1 cut(s)	106
AfaI	GTAC	4 cut(s)	28, 116, 578, 805
AhlI	ACTAGT	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	6 cut(s)	161, 314, 385, 482, 664, 797
AluI	AGCT	6 cut(s)	161, 314, 385, 482, 664, 797
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	3 cut(s)	323, 336, 662
AoxI	GGCC	2 cut(s)	294, 777
ApaI	GGGCCC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	314, 317, 449
ApoI	RAATTY	1 cut(s)	106
Asp700I	GAANNNNTTC	2 cut(s)	60, 681
Asp718I	GGTACC	1 cut(s)	26
AspS9I	GGNCC	4 cut(s)	166, 294, 295, 778
AsuHPI	GGTGA	1 cut(s)	782
AvaII	GGWCC	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	298
BamHI	GGATCC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	301, 304, 436
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	341
BcuI	ACTAGT	1 cut(s)	526
BfaI	CTAG	2 cut(s)	411, 527
BfmI	CTRYAG	2 cut(s)	345, 486
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	3 cut(s)	315, 318, 450
BlsI	GCNGC	3 cut(s)	316, 319, 451
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	4 cut(s)	166, 294, 295, 778
BmiI	GGNNCC	5 cut(s)	28, 167, 296, 330, 678
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	446
BoxI	GACNNNNGTC	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	6
Bsa29I	ATCGAT	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bse1I	ACTGG	2 cut(s)	160, 678
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	333
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	106, 223
BseJI	GATNNNNATC	1 cut(s)	597
BseNI	ACTGG	2 cut(s)	160, 678
BseRI	GAGGAG	3 cut(s)	365, 457, 777
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	301, 304, 436
BshFI	GGCC	2 cut(s)	296, 779
BshNI	GGYRCC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	657
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	3 cut(s)	60, 231, 630
BsnI	GGCC	2 cut(s)	296, 779
Bso31I	GGTCTC	1 cut(s)	341
Bsp120I	GGGCCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	328, 413, 654, 658
BspANI	GGCC	2 cut(s)	296, 779
BspDI	ATCGAT	1 cut(s)	657
BspLI	GGNNCC	5 cut(s)	28, 167, 296, 330, 678
BspPI	GGATC	3 cut(s)	323, 336, 662
BspQI	GCTCTTC	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	160, 678
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	4 cut(s)	328, 413, 654, 658
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	5 cut(s)	257, 265, 487, 576, 759
Bst6I	CTCTTC	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	408, 589
BstF5I	GGATG	2 cut(s)	106, 223
BstKTI	GATC	4 cut(s)	331, 416, 657, 661
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	4 cut(s)	328, 413, 654, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	4 cut(s)	71, 135, 410, 591
BstPAI	GACNNNNGTC	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	2 cut(s)	345, 486
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	301, 304, 436
BstX2I	RGATCY	2 cut(s)	328, 413
BstYI	RGATCY	2 cut(s)	328, 413
Bsu15I	ATCGAT	1 cut(s)	657
BsuRI	GGCC	2 cut(s)	296, 779
BsuTUI	ATCGAT	1 cut(s)	657
BtsCI	GGATG	2 cut(s)	106, 223
BtsIMutI	CAGTG	2 cut(s)	261, 572
Cac8I	GCNNGC	2 cut(s)	408, 589
Cfr13I	GGNCC	4 cut(s)	166, 294, 295, 778
ClaI	ATCGAT	1 cut(s)	657
Csp6I	GTAC	4 cut(s)	27, 115, 577, 804
CviAII	CATG	7 cut(s)	68, 111, 132, 407, 557, 588, 831
CviQI	GTAC	4 cut(s)	27, 115, 577, 804
DpnI	GATC	4 cut(s)	330, 415, 656, 660
DpnII	GATC	4 cut(s)	328, 413, 654, 658
DraI	TTTAAA	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	166
EcoO109I	RGGNCCY	3 cut(s)	294, 295, 778
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	7 cut(s)	71, 114, 135, 410, 560, 591, 834
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	7 cut(s)	67, 110, 131, 406, 556, 587, 830
Fnu4HI	GCNGC	3 cut(s)	315, 318, 450
FokI	GGATG	2 cut(s)	113, 230
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	3 cut(s)	315, 318, 450
FspBI	CTAG	2 cut(s)	411, 527
GluI	GCNGC	3 cut(s)	315, 318, 450
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	296, 779
Hin1II	CATG	7 cut(s)	71, 114, 135, 410, 560, 591, 834
HinfI	GANTC	2 cut(s)	593, 641
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	3 cut(s)	268, 457, 769
Hpy188I	TCNGA	2 cut(s)	502, 510
Hpy188III	TCNNGA	5 cut(s)	89, 239, 278, 303, 377
Hpy8I	GTNNAC	3 cut(s)	268, 457, 769
HpyAV	CCTTC	3 cut(s)	187, 383, 645
HpyCH4III	ACNGT	5 cut(s)	257, 265, 487, 576, 759
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	4 cut(s)	131, 184, 229, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	7 cut(s)	71, 114, 135, 410, 560, 591, 834
KpnI	GGTACC	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	328, 413, 654, 658
LguI	GCTCTTC	1 cut(s)	472
LmnI	GCTCC	2 cut(s)	158, 574
LpnPI	CCDG	9 cut(s)	141, 252, 263, 288, 318, 345, 371, 431, 659
Lsp1109I	GCAGC	3 cut(s)	301, 304, 436
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	2 cut(s)	411, 527
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	4 cut(s)	330, 415, 656, 660
MboI	GATC	4 cut(s)	328, 413, 654, 658
MboII	GAAGA	1 cut(s)	489
MflI	RGATCY	2 cut(s)	328, 413
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	106, 810
MnlI	CCTC	7 cut(s)	31, 343, 346, 478, 496, 798, 817
Mph1103I	ATGCAT	1 cut(s)	133
MroXI	GAANNNNTTC	2 cut(s)	60, 681
MseI	TTAA	4 cut(s)	252, 323, 398, 552
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	3 cut(s)	60, 231, 630
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	4 cut(s)	328, 413, 654, 658
NlaIII	CATG	7 cut(s)	71, 114, 135, 410, 560, 591, 834
NlaIV	GGNNCC	5 cut(s)	28, 167, 296, 330, 678
NmuCI	GTSAC	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	4 cut(s)	71, 135, 410, 591
PaeI	GCATGC	2 cut(s)	410, 591
PciSI	GCTCTTC	1 cut(s)	472
PctI	GAATGC	3 cut(s)	60, 231, 630
PdmI	GAANNNNTTC	2 cut(s)	60, 681
PfeI	GAWTC	2 cut(s)	593, 641
PkrI	GCNGC	3 cut(s)	316, 319, 451
PshAI	GACNNNNGTC	1 cut(s)	427
Psp1406I	AACGTT	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	5 cut(s)	28, 167, 296, 330, 678
PspOMI	GGGCCC	1 cut(s)	294
PspPI	GGNCC	4 cut(s)	166, 294, 295, 778
PsuI	RGATCY	2 cut(s)	328, 413
RsaI	GTAC	4 cut(s)	28, 116, 578, 805
RsaNI	GTAC	4 cut(s)	27, 115, 577, 804
SapI	GCTCTTC	1 cut(s)	472
SaqAI	TTAA	4 cut(s)	252, 323, 398, 552
SatI	GCNGC	3 cut(s)	315, 318, 450
Sau3AI	GATC	4 cut(s)	328, 413, 654, 658
Sau96I	GGNCC	4 cut(s)	166, 294, 295, 778
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	446
SfcI	CTRYAG	2 cut(s)	345, 486
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
SpeI	ACTAGT	1 cut(s)	526
SphI	GCATGC	2 cut(s)	410, 591
Sse9I	AATT	2 cut(s)	106, 810
SspMI	CTAG	2 cut(s)	411, 527
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	5 cut(s)	257, 265, 487, 576, 759
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	2 cut(s)	475, 657
TasI	AATT	2 cut(s)	106, 810
TatI	WGTACW	1 cut(s)	576
TfiI	GAWTC	2 cut(s)	593, 641
Tru1I	TTAA	4 cut(s)	252, 323, 398, 552
Tru9I	TTAA	4 cut(s)	252, 323, 398, 552
TscAI	CASTG	2 cut(s)	268, 579
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	3 cut(s)	314, 317, 449
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	6 cut(s)	69, 99, 234, 303, 674, 739
TspGWI	ACGGA	2 cut(s)	786, 791
TspRI	CASTG	2 cut(s)	268, 579
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	4 cut(s)	71, 135, 410, 591
XmnI	GAANNNNTTC	2 cut(s)	60, 681
XspI	CTAG	2 cut(s)	411, 527
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.